Protospacer adjacent motif (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Protospacer adjacent motif" in English language version.

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1sgmjournals.org

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1web.archive.org

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1landesbioscience.com

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1semanticscholar.org

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doi.org

Shah SA, Erdmann S, Mojica FJ, Garrett RA (2013). "Protospacer recognition motifs: mixed identities and functional diversity". RNA Biology. 10 (5): 891–899. doi:10.4161/rna.23764. PMC 3737346. PMID 23403393.
Mojica FJ, Díez-Villaseñor C, García-Martínez J, Almendros C (2009). "Short motif sequences determine the targets of the prokaryotic CRISPR defence system". Microbiology. 155 (Pt 3): 733–740. doi:10.1099/mic.0.023960-0. PMID 19246744.
Shah SA, Erdmann S, Mojica FJ, Garrett RA (2013). "Protospacer recognition motifs: mixed identities and functional diversity". RNA Biology. 10 (5): 891–899. doi:10.4161/rna.23764. PMC 3737346. PMID 23403393. Archived from the original on 2014-09-04.
Jinek M, Chylinski K, Fonfara I, Hauer M, Doudna JA, Charpentier E (2012). "A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity". Science. 337 (6096): 816–821. Bibcode:2012Sci...337..816J. doi:10.1126/science.1225829. PMC 6286148. PMID 22745249.
Sternberg SH, Redding S, Jinek M, Greene EC, Doudna JA (2014). "DNA interrogation by the CRISPR RNA-guided endonuclease Cas9". Nature. 507 (7490): 62–67. Bibcode:2014Natur.507...62S. doi:10.1038/nature13011. PMC 4106473. PMID 24476820.
Mali P, Esvelt KM, Church GM (2013). "Cas9 as a versatile tool for engineering biology". Nature Methods. 10 (10): 957–963. doi:10.1038/nmeth.2649. PMC 4051438. PMID 24076990.
Mali P, Yang L, Esvelt KM, Aach J, Guell M, DiCarlo JE, Norville JE, Church GM (2013). "RNA-guided human genome engineering via Cas9". Science. 339 (6121): 823–826. Bibcode:2013Sci...339..823M. doi:10.1126/science.1232033. PMC 3712628. PMID 23287722.
Cong L, Ran FA, Cox D, Lin S, Barretto R, Habib N, Hsu PD, Wu X, Jiang W, Marraffini LA, Zhang F (2013). "Multiplex genome engineering using CRISPR/Cas systems". Science. 339 (6121): 819–823. Bibcode:2013Sci...339..819C. doi:10.1126/science.1231143. PMC 3795411. PMID 23287718.
Anders C, Niewoehner O, Duerst A, Jinek M (2014). "Structural basis of PAM-dependent target DNA recognition by the Cas9 endonuclease". Nature. 513 (7519): 569–573. Bibcode:2014Natur.513..569A. doi:10.1038/nature13579. PMC 4176945. PMID 25079318.
Esvelt KM, Mali P, Braff JL, Moosburner M, Yaung SJ, Church GM (2013). "Orthogonal Cas9 proteins for RNA-guided gene regulation and editing". Nature Methods. 10 (11): 1116–1123. doi:10.1038/nmeth.2681. PMC 3844869. PMID 24076762.
Zhang Y, Ge X, Yang F, Zhang L, Zheng J, Tan X, Jin ZB, Qu J, Gu F (2014). "Comparison of non-canonical PAMs for CRISPR/Cas9-mediated DNA cleavage in human cells". Scientific Reports. 4: 5405. Bibcode:2014NatSR...4E5405Z. doi:10.1038/srep05405. PMC 4066725. PMID 24956376.
Kleinstiver BP, Prew MS, Tsai SQ, Topkar VV, Nguyen NT, Zheng Z, Gonzales AP, Li Z, Peterson RT, Yeh JR, Aryee MJ, Joung JK (2015). "Engineered CRISPR-Cas9 nucleases with altered PAM specificities". Nature. 523 (7561): 481–485. Bibcode:2015Natur.523..481K. doi:10.1038/nature14592. PMC 4540238. PMID 26098369.
Hirano H, Gootenberg JS, Horii T, Abudayyeh OO, Kimura M, Hsu PD, Nakane T, Ishitani R, Hatada I, Zhang F, Nishimasu H, Nureki O (2016). "Structure and Engineering of Francisella novicida Cas9". Cell. 164 (5): 950–961. doi:10.1016/j.cell.2016.01.039. PMC 4899972. PMID 26875867.
Zetsche B, Gootenberg JS, Abudayyeh OO, Slaymaker IM, Makarova KS, Essletzbichler P, Volz SE, Joung J, van der Oost J, Regev A, Koonin EV, Zhang F (2015). "Cpf1 is a single RNA-guided endonuclease of a class 2 CRISPR-Cas system". Cell. 163 (3): 759–771. doi:10.1016/j.cell.2015.09.038. PMC 4638220. PMID 26422227.
Fonfara I, Richter H, Bratovič M, Le Rhun A, Charpentier E (2016). "The CRISPR-associated DNA-cleaving enzyme Cpf1 also processes precursor CRISPR RNA". Nature. 532 (7600): 517–521. Bibcode:2016Natur.532..517F. doi:10.1038/nature17945. PMID 27096362. S2CID 2271552.
Shmakov S, et al. (2017). "Diversity and evolution of class 2 CRISPR-Cas systems". Nat. Rev. Microbiol. 15 (3): 169–182. doi:10.1038/nrmicro.2016.184. PMC 5851899. PMID 28111461.
Abudayyeh OO, Gootenberg JS, Konermann S, Joung J, Slaymaker IM, Cox DB, Shmakov S, Makarova KS, Semenova E, Minakhin L, Severinov K, Regev A, Lander ES, Koonin EV, Zhang F (2016). "C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector". Science. 353 (6299): aaf5573. doi:10.1126/science.aaf5573. PMC 5127784. PMID 27256883.
Tsai SQ, Zheng Z, Nguyen NT, Liebers M, Topkar VV, Thapar V, Wyvekens N, Khayter C, Iafrate AJ, Le LP, Aryee MJ, Joung JK (2015). "GUIDE-seq enables genome-wide profiling of off-target cleavage by CRISPR-Cas nucleas". Nature Biotechnology. 33 (2): 187–197. doi:10.1038/nbt.3117. PMC 4320685. PMID 25513782.
Li Y, Mendiratta S, Ehrhardt K, Kashyap N, White MA, Bleris L (2016). "Exploiting the CRISPR/Cas9 PAM Constraint for Single-Nucleotide Resolution Interventions". PLoS One. 11 (1): e0144970. Bibcode:2016PLoSO..1144970L. doi:10.1371/journal.pone.0144970. PMC 4720446. PMID 26788852.

economist.com

"Even CRISPR". The Economist. ISSN 0013-0613. Retrieved 2016-05-27.

genome.jp

"Nucleotide Codes, Amino Acid Codes, and Genetic Codes". KEGG: Kyoto Encyclopedia of Genes and Genomes. July 15, 2014. Retrieved 2016-04-06.

harvard.edu

ui.adsabs.harvard.edu

Jinek M, Chylinski K, Fonfara I, Hauer M, Doudna JA, Charpentier E (2012). "A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity". Science. 337 (6096): 816–821. Bibcode:2012Sci...337..816J. doi:10.1126/science.1225829. PMC 6286148. PMID 22745249.
Sternberg SH, Redding S, Jinek M, Greene EC, Doudna JA (2014). "DNA interrogation by the CRISPR RNA-guided endonuclease Cas9". Nature. 507 (7490): 62–67. Bibcode:2014Natur.507...62S. doi:10.1038/nature13011. PMC 4106473. PMID 24476820.
Mali P, Yang L, Esvelt KM, Aach J, Guell M, DiCarlo JE, Norville JE, Church GM (2013). "RNA-guided human genome engineering via Cas9". Science. 339 (6121): 823–826. Bibcode:2013Sci...339..823M. doi:10.1126/science.1232033. PMC 3712628. PMID 23287722.
Cong L, Ran FA, Cox D, Lin S, Barretto R, Habib N, Hsu PD, Wu X, Jiang W, Marraffini LA, Zhang F (2013). "Multiplex genome engineering using CRISPR/Cas systems". Science. 339 (6121): 819–823. Bibcode:2013Sci...339..819C. doi:10.1126/science.1231143. PMC 3795411. PMID 23287718.
Anders C, Niewoehner O, Duerst A, Jinek M (2014). "Structural basis of PAM-dependent target DNA recognition by the Cas9 endonuclease". Nature. 513 (7519): 569–573. Bibcode:2014Natur.513..569A. doi:10.1038/nature13579. PMC 4176945. PMID 25079318.
Zhang Y, Ge X, Yang F, Zhang L, Zheng J, Tan X, Jin ZB, Qu J, Gu F (2014). "Comparison of non-canonical PAMs for CRISPR/Cas9-mediated DNA cleavage in human cells". Scientific Reports. 4: 5405. Bibcode:2014NatSR...4E5405Z. doi:10.1038/srep05405. PMC 4066725. PMID 24956376.
Kleinstiver BP, Prew MS, Tsai SQ, Topkar VV, Nguyen NT, Zheng Z, Gonzales AP, Li Z, Peterson RT, Yeh JR, Aryee MJ, Joung JK (2015). "Engineered CRISPR-Cas9 nucleases with altered PAM specificities". Nature. 523 (7561): 481–485. Bibcode:2015Natur.523..481K. doi:10.1038/nature14592. PMC 4540238. PMID 26098369.
Fonfara I, Richter H, Bratovič M, Le Rhun A, Charpentier E (2016). "The CRISPR-associated DNA-cleaving enzyme Cpf1 also processes precursor CRISPR RNA". Nature. 532 (7600): 517–521. Bibcode:2016Natur.532..517F. doi:10.1038/nature17945. PMID 27096362. S2CID 2271552.
Li Y, Mendiratta S, Ehrhardt K, Kashyap N, White MA, Bleris L (2016). "Exploiting the CRISPR/Cas9 PAM Constraint for Single-Nucleotide Resolution Interventions". PLoS One. 11 (1): e0144970. Bibcode:2016PLoSO..1144970L. doi:10.1371/journal.pone.0144970. PMC 4720446. PMID 26788852.

landesbioscience.com

Shah SA, Erdmann S, Mojica FJ, Garrett RA (2013). "Protospacer recognition motifs: mixed identities and functional diversity". RNA Biology. 10 (5): 891–899. doi:10.4161/rna.23764. PMC 3737346. PMID 23403393. Archived from the original on 2014-09-04.

nih.gov

pubmed.ncbi.nlm.nih.gov

Shah SA, Erdmann S, Mojica FJ, Garrett RA (2013). "Protospacer recognition motifs: mixed identities and functional diversity". RNA Biology. 10 (5): 891–899. doi:10.4161/rna.23764. PMC 3737346. PMID 23403393.
Mojica FJ, Díez-Villaseñor C, García-Martínez J, Almendros C (2009). "Short motif sequences determine the targets of the prokaryotic CRISPR defence system". Microbiology. 155 (Pt 3): 733–740. doi:10.1099/mic.0.023960-0. PMID 19246744.
Shah SA, Erdmann S, Mojica FJ, Garrett RA (2013). "Protospacer recognition motifs: mixed identities and functional diversity". RNA Biology. 10 (5): 891–899. doi:10.4161/rna.23764. PMC 3737346. PMID 23403393. Archived from the original on 2014-09-04.
Jinek M, Chylinski K, Fonfara I, Hauer M, Doudna JA, Charpentier E (2012). "A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity". Science. 337 (6096): 816–821. Bibcode:2012Sci...337..816J. doi:10.1126/science.1225829. PMC 6286148. PMID 22745249.
Sternberg SH, Redding S, Jinek M, Greene EC, Doudna JA (2014). "DNA interrogation by the CRISPR RNA-guided endonuclease Cas9". Nature. 507 (7490): 62–67. Bibcode:2014Natur.507...62S. doi:10.1038/nature13011. PMC 4106473. PMID 24476820.
Mali P, Esvelt KM, Church GM (2013). "Cas9 as a versatile tool for engineering biology". Nature Methods. 10 (10): 957–963. doi:10.1038/nmeth.2649. PMC 4051438. PMID 24076990.
Mali P, Yang L, Esvelt KM, Aach J, Guell M, DiCarlo JE, Norville JE, Church GM (2013). "RNA-guided human genome engineering via Cas9". Science. 339 (6121): 823–826. Bibcode:2013Sci...339..823M. doi:10.1126/science.1232033. PMC 3712628. PMID 23287722.
Cong L, Ran FA, Cox D, Lin S, Barretto R, Habib N, Hsu PD, Wu X, Jiang W, Marraffini LA, Zhang F (2013). "Multiplex genome engineering using CRISPR/Cas systems". Science. 339 (6121): 819–823. Bibcode:2013Sci...339..819C. doi:10.1126/science.1231143. PMC 3795411. PMID 23287718.
Anders C, Niewoehner O, Duerst A, Jinek M (2014). "Structural basis of PAM-dependent target DNA recognition by the Cas9 endonuclease". Nature. 513 (7519): 569–573. Bibcode:2014Natur.513..569A. doi:10.1038/nature13579. PMC 4176945. PMID 25079318.
Esvelt KM, Mali P, Braff JL, Moosburner M, Yaung SJ, Church GM (2013). "Orthogonal Cas9 proteins for RNA-guided gene regulation and editing". Nature Methods. 10 (11): 1116–1123. doi:10.1038/nmeth.2681. PMC 3844869. PMID 24076762.
Zhang Y, Ge X, Yang F, Zhang L, Zheng J, Tan X, Jin ZB, Qu J, Gu F (2014). "Comparison of non-canonical PAMs for CRISPR/Cas9-mediated DNA cleavage in human cells". Scientific Reports. 4: 5405. Bibcode:2014NatSR...4E5405Z. doi:10.1038/srep05405. PMC 4066725. PMID 24956376.
Kleinstiver BP, Prew MS, Tsai SQ, Topkar VV, Nguyen NT, Zheng Z, Gonzales AP, Li Z, Peterson RT, Yeh JR, Aryee MJ, Joung JK (2015). "Engineered CRISPR-Cas9 nucleases with altered PAM specificities". Nature. 523 (7561): 481–485. Bibcode:2015Natur.523..481K. doi:10.1038/nature14592. PMC 4540238. PMID 26098369.
Hirano H, Gootenberg JS, Horii T, Abudayyeh OO, Kimura M, Hsu PD, Nakane T, Ishitani R, Hatada I, Zhang F, Nishimasu H, Nureki O (2016). "Structure and Engineering of Francisella novicida Cas9". Cell. 164 (5): 950–961. doi:10.1016/j.cell.2016.01.039. PMC 4899972. PMID 26875867.
Zetsche B, Gootenberg JS, Abudayyeh OO, Slaymaker IM, Makarova KS, Essletzbichler P, Volz SE, Joung J, van der Oost J, Regev A, Koonin EV, Zhang F (2015). "Cpf1 is a single RNA-guided endonuclease of a class 2 CRISPR-Cas system". Cell. 163 (3): 759–771. doi:10.1016/j.cell.2015.09.038. PMC 4638220. PMID 26422227.
Fonfara I, Richter H, Bratovič M, Le Rhun A, Charpentier E (2016). "The CRISPR-associated DNA-cleaving enzyme Cpf1 also processes precursor CRISPR RNA". Nature. 532 (7600): 517–521. Bibcode:2016Natur.532..517F. doi:10.1038/nature17945. PMID 27096362. S2CID 2271552.
Shmakov S, et al. (2017). "Diversity and evolution of class 2 CRISPR-Cas systems". Nat. Rev. Microbiol. 15 (3): 169–182. doi:10.1038/nrmicro.2016.184. PMC 5851899. PMID 28111461.
Abudayyeh OO, Gootenberg JS, Konermann S, Joung J, Slaymaker IM, Cox DB, Shmakov S, Makarova KS, Semenova E, Minakhin L, Severinov K, Regev A, Lander ES, Koonin EV, Zhang F (2016). "C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector". Science. 353 (6299): aaf5573. doi:10.1126/science.aaf5573. PMC 5127784. PMID 27256883.
Tsai SQ, Zheng Z, Nguyen NT, Liebers M, Topkar VV, Thapar V, Wyvekens N, Khayter C, Iafrate AJ, Le LP, Aryee MJ, Joung JK (2015). "GUIDE-seq enables genome-wide profiling of off-target cleavage by CRISPR-Cas nucleas". Nature Biotechnology. 33 (2): 187–197. doi:10.1038/nbt.3117. PMC 4320685. PMID 25513782.
Li Y, Mendiratta S, Ehrhardt K, Kashyap N, White MA, Bleris L (2016). "Exploiting the CRISPR/Cas9 PAM Constraint for Single-Nucleotide Resolution Interventions". PLoS One. 11 (1): e0144970. Bibcode:2016PLoSO..1144970L. doi:10.1371/journal.pone.0144970. PMC 4720446. PMID 26788852.

ncbi.nlm.nih.gov

Shah SA, Erdmann S, Mojica FJ, Garrett RA (2013). "Protospacer recognition motifs: mixed identities and functional diversity". RNA Biology. 10 (5): 891–899. doi:10.4161/rna.23764. PMC 3737346. PMID 23403393.
Shah SA, Erdmann S, Mojica FJ, Garrett RA (2013). "Protospacer recognition motifs: mixed identities and functional diversity". RNA Biology. 10 (5): 891–899. doi:10.4161/rna.23764. PMC 3737346. PMID 23403393. Archived from the original on 2014-09-04.
Jinek M, Chylinski K, Fonfara I, Hauer M, Doudna JA, Charpentier E (2012). "A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity". Science. 337 (6096): 816–821. Bibcode:2012Sci...337..816J. doi:10.1126/science.1225829. PMC 6286148. PMID 22745249.
Sternberg SH, Redding S, Jinek M, Greene EC, Doudna JA (2014). "DNA interrogation by the CRISPR RNA-guided endonuclease Cas9". Nature. 507 (7490): 62–67. Bibcode:2014Natur.507...62S. doi:10.1038/nature13011. PMC 4106473. PMID 24476820.
Mali P, Esvelt KM, Church GM (2013). "Cas9 as a versatile tool for engineering biology". Nature Methods. 10 (10): 957–963. doi:10.1038/nmeth.2649. PMC 4051438. PMID 24076990.
Mali P, Yang L, Esvelt KM, Aach J, Guell M, DiCarlo JE, Norville JE, Church GM (2013). "RNA-guided human genome engineering via Cas9". Science. 339 (6121): 823–826. Bibcode:2013Sci...339..823M. doi:10.1126/science.1232033. PMC 3712628. PMID 23287722.
Cong L, Ran FA, Cox D, Lin S, Barretto R, Habib N, Hsu PD, Wu X, Jiang W, Marraffini LA, Zhang F (2013). "Multiplex genome engineering using CRISPR/Cas systems". Science. 339 (6121): 819–823. Bibcode:2013Sci...339..819C. doi:10.1126/science.1231143. PMC 3795411. PMID 23287718.
Anders C, Niewoehner O, Duerst A, Jinek M (2014). "Structural basis of PAM-dependent target DNA recognition by the Cas9 endonuclease". Nature. 513 (7519): 569–573. Bibcode:2014Natur.513..569A. doi:10.1038/nature13579. PMC 4176945. PMID 25079318.
Esvelt KM, Mali P, Braff JL, Moosburner M, Yaung SJ, Church GM (2013). "Orthogonal Cas9 proteins for RNA-guided gene regulation and editing". Nature Methods. 10 (11): 1116–1123. doi:10.1038/nmeth.2681. PMC 3844869. PMID 24076762.
Zhang Y, Ge X, Yang F, Zhang L, Zheng J, Tan X, Jin ZB, Qu J, Gu F (2014). "Comparison of non-canonical PAMs for CRISPR/Cas9-mediated DNA cleavage in human cells". Scientific Reports. 4: 5405. Bibcode:2014NatSR...4E5405Z. doi:10.1038/srep05405. PMC 4066725. PMID 24956376.
Kleinstiver BP, Prew MS, Tsai SQ, Topkar VV, Nguyen NT, Zheng Z, Gonzales AP, Li Z, Peterson RT, Yeh JR, Aryee MJ, Joung JK (2015). "Engineered CRISPR-Cas9 nucleases with altered PAM specificities". Nature. 523 (7561): 481–485. Bibcode:2015Natur.523..481K. doi:10.1038/nature14592. PMC 4540238. PMID 26098369.
Hirano H, Gootenberg JS, Horii T, Abudayyeh OO, Kimura M, Hsu PD, Nakane T, Ishitani R, Hatada I, Zhang F, Nishimasu H, Nureki O (2016). "Structure and Engineering of Francisella novicida Cas9". Cell. 164 (5): 950–961. doi:10.1016/j.cell.2016.01.039. PMC 4899972. PMID 26875867.
Zetsche B, Gootenberg JS, Abudayyeh OO, Slaymaker IM, Makarova KS, Essletzbichler P, Volz SE, Joung J, van der Oost J, Regev A, Koonin EV, Zhang F (2015). "Cpf1 is a single RNA-guided endonuclease of a class 2 CRISPR-Cas system". Cell. 163 (3): 759–771. doi:10.1016/j.cell.2015.09.038. PMC 4638220. PMID 26422227.
Shmakov S, et al. (2017). "Diversity and evolution of class 2 CRISPR-Cas systems". Nat. Rev. Microbiol. 15 (3): 169–182. doi:10.1038/nrmicro.2016.184. PMC 5851899. PMID 28111461.
Abudayyeh OO, Gootenberg JS, Konermann S, Joung J, Slaymaker IM, Cox DB, Shmakov S, Makarova KS, Semenova E, Minakhin L, Severinov K, Regev A, Lander ES, Koonin EV, Zhang F (2016). "C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector". Science. 353 (6299): aaf5573. doi:10.1126/science.aaf5573. PMC 5127784. PMID 27256883.
Tsai SQ, Zheng Z, Nguyen NT, Liebers M, Topkar VV, Thapar V, Wyvekens N, Khayter C, Iafrate AJ, Le LP, Aryee MJ, Joung JK (2015). "GUIDE-seq enables genome-wide profiling of off-target cleavage by CRISPR-Cas nucleas". Nature Biotechnology. 33 (2): 187–197. doi:10.1038/nbt.3117. PMC 4320685. PMID 25513782.
Li Y, Mendiratta S, Ehrhardt K, Kashyap N, White MA, Bleris L (2016). "Exploiting the CRISPR/Cas9 PAM Constraint for Single-Nucleotide Resolution Interventions". PLoS One. 11 (1): e0144970. Bibcode:2016PLoSO..1144970L. doi:10.1371/journal.pone.0144970. PMC 4720446. PMID 26788852.

semanticscholar.org

api.semanticscholar.org

Fonfara I, Richter H, Bratovič M, Le Rhun A, Charpentier E (2016). "The CRISPR-associated DNA-cleaving enzyme Cpf1 also processes precursor CRISPR RNA". Nature. 532 (7600): 517–521. Bibcode:2016Natur.532..517F. doi:10.1038/nature17945. PMID 27096362. S2CID 2271552.

sgmjournals.org

mic.sgmjournals.org

Mojica FJ, Díez-Villaseñor C, García-Martínez J, Almendros C (2009). "Short motif sequences determine the targets of the prokaryotic CRISPR defence system". Microbiology. 155 (Pt 3): 733–740. doi:10.1099/mic.0.023960-0. PMID 19246744.

web.archive.org

Shah SA, Erdmann S, Mojica FJ, Garrett RA (2013). "Protospacer recognition motifs: mixed identities and functional diversity". RNA Biology. 10 (5): 891–899. doi:10.4161/rna.23764. PMC 3737346. PMID 23403393. Archived from the original on 2014-09-04.

worldcat.org

"Even CRISPR". The Economist. ISSN 0013-0613. Retrieved 2016-05-27.