Proximity labeling (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Proximity labeling" in English language version.

refsWebsite

Global rank English rank

39nih.gov

4^th place

23doi.org

2^nd place

21worldcat.org

5^th place

4harvard.edu

18^th place

17^th place

2semanticscholar.org

11^th place

8^th place

1nature.com

234^th place

397^th place

1handle.net

102^nd place

76^th place

1science.org

1,160^th place

737^th place

1acs.org

1,248^th place

1,104^th place

1endpts.com

low place

acs.org

cen.acs.org

Cross, Ryan (March 11, 2020). "Merck and Princeton scientists create method to map cell-surface microenvironments". Chemical & Engineering News.

doi.org

Roux, Kyle J.; Kim, Dae In; Raida, Manfred; Burke, Brian (2012-03-19). "A promiscuous biotin ligase fusion protein identifies proximal and interacting proteins in mammalian cells". Journal of Cell Biology. 196 (6): 801–810. doi:10.1083/jcb.201112098. ISSN 0021-9525. PMC 3308701. PMID 22412018.
Han, Shuo; Li, Jiefu; Ting, Alice Y (2018-06-01). "Proximity labeling: spatially resolved proteomic mapping for neurobiology". Current Opinion in Neurobiology. Neurotechnologies. 50: 17–23. doi:10.1016/j.conb.2017.10.015. ISSN 0959-4388. PMC 6726430. PMID 29125959.
Trinkle-Mulcahy, Laura (2019-01-31). "Recent advances in proximity-based labeling methods for interactome mapping". F1000Research. 8: 135. doi:10.12688/f1000research.16903.1. ISSN 2046-1402. PMC 6357996. PMID 30774936.
Steensel, Bas van; Henikoff, Steven (April 2000). "Identification of in vivo DNA targets of chromatin proteins using tethered Dam methyltransferase". Nature Biotechnology. 18 (4): 424–428. doi:10.1038/74487. ISSN 1546-1696. PMID 10748524. S2CID 30350384.
Branon, Tess C.; Bosch, Justin A.; Sanchez, Ariana D.; Udeshi, Namrata D.; Svinkina, Tanya; Carr, Steven A.; Feldman, Jessica L.; Perrimon, Norbert; Ting, Alice Y. (2018-10-01). "Efficient proximity labeling in living cells and organisms with TurboID". Nature Biotechnology. 36 (9): 880–887. doi:10.1038/nbt.4201. ISSN 1546-1696. PMC 6126969. PMID 30125270.
Rhee, Hyun-Woo; Zou, Peng; Udeshi, Namrata D.; Martell, Jeffrey D.; Mootha, Vamsi K.; Carr, Steven A.; Ting, Alice Y. (2013-03-15). "Proteomic Mapping of Mitochondria in Living Cells via Spatially Restricted Enzymatic Tagging". Science. 339 (6125): 1328–1331. Bibcode:2013Sci...339.1328R. doi:10.1126/science.1230593. ISSN 0036-8075. PMC 3916822. PMID 23371551.
Lam, Stephanie S.; Martell, Jeffrey D.; Kamer, Kimberli J.; Deerinck, Thomas J.; Ellisman, Mark H.; Mootha, Vamsi K.; Ting, Alice Y. (January 2015). "Directed evolution of APEX2 for electron microscopy and proximity labeling". Nature Methods. 12 (1): 51–54. doi:10.1038/nmeth.3179. hdl:1721.1/110613. ISSN 1548-7105. PMC 4296904. PMID 25419960.
Kalocsay, Marian (2019). "APEX Peroxidase-Catalyzed Proximity Labeling and Multiplexed Quantitative Proteomics". In Sunbul, Murat; Jäschke, Andres (eds.). Proximity Labeling: Methods and Protocols. Methods in Molecular Biology. Vol. 2008. Springer. pp. 41–55. doi:10.1007/978-1-4939-9537-0_4. ISBN 978-1-4939-9537-0. PMID 31124087. S2CID 163166385.
Rees, Johanna S.; Li, Xue-Wen; Perrett, Sarah; Lilley, Kathryn S.; Jackson, Antony P. (2015-11-01). "Protein Neighbors and Proximity Proteomics". Molecular & Cellular Proteomics. 14 (11): 2848–2856. doi:10.1074/mcp.R115.052902. ISSN 1535-9476. PMC 4638030. PMID 26355100.
Bar, Daniel Z; Atkatsh, Kathleen; Tavarez, Urraca; Erdos, Michael R; Gruenbaum, Yosef; Collins, Francis S (February 2018). "Biotinylation by antibody recognition - A method for proximity labeling". Nature Methods. 15 (2): 127–133. doi:10.1038/nmeth.4533. ISSN 1548-7091. PMC 5790613. PMID 29256494.
Mick, David U.; Rodrigues, Rachel B.; Leib, Ryan D.; Adams, Christopher M.; Chien, Allis S.; Gygi, Steven P.; Nachury, Maxence V. (2015-11-23). "Proteomics of Primary Cilia by Proximity Labeling". Developmental Cell. 35 (4): 497–512. doi:10.1016/j.devcel.2015.10.015. ISSN 1878-1551. PMC 4662609. PMID 26585297.
Youn, Ji-Young; Dunham, Wade H.; Hong, Seo Jung; Knight, James D.R.; Bashkurov, Mikhail; Chen, Ginny I.; Bagci, Halil; Rathod, Bhavisha; MacLeod, Graham; Eng, Simon W.M.; Angers, Stéphane (February 2018). "High-Density Proximity Mapping Reveals the Subcellular Organization of mRNA-Associated Granules and Bodies". Molecular Cell. 69 (3): 517–532.e11. doi:10.1016/j.molcel.2017.12.020. ISSN 1097-2765. PMID 29395067.
Bersuker, Kirill; Peterson, Clark W. H.; To, Milton; Sahl, Steffen J.; Savikhin, Victoria; Grossman, Elizabeth A.; Nomura, Daniel K.; Olzmann, James A. (2018-01-08). "A Proximity Labeling Strategy Provides Insights into the Composition and Dynamics of Lipid Droplet Proteomes". Developmental Cell. 44 (1): 97–112.e7. doi:10.1016/j.devcel.2017.11.020. ISSN 1534-5807. PMC 5764092. PMID 29275994.
Paek, Jaeho; Kalocsay, Marian; Staus, Dean P.; Wingler, Laura; Pascolutti, Roberta; Paulo, Joao A.; Gygi, Steven P.; Kruse, Andrew C. (6 April 2017). "Multidimensional Tracking of GPCR Signaling via Peroxidase-Catalyzed Proximity Labeling". Cell. 169 (2): 338–349.e11. doi:10.1016/j.cell.2017.03.028. ISSN 1097-4172. PMC 5514552. PMID 28388415.
Lobingier, Braden T.; Hüttenhain, Ruth; Eichel, Kelsie; Miller, Kenneth B.; Ting, Alice Y.; von Zastrow, Mark; Krogan, Nevan J. (6 April 2017). "An Approach to Spatiotemporally Resolve Protein Interaction Networks in Living Cells". Cell. 169 (2): 350–360.e12. doi:10.1016/j.cell.2017.03.022. ISSN 1097-4172. PMC 5616215. PMID 28388416.
Shields, Emily J.; Petracovici, Ana F.; Bonasio, Roberto (2019-04-15). "lncRedibly versatile: biochemical and biological functions of long noncoding RNAs". Biochemical Journal. 476 (7): 1083–1104. doi:10.1042/BCJ20180440. ISSN 0264-6021. PMC 6745715. PMID 30971458.
Fazal, Furqan M.; Han, Shuo; Parker, Kevin R.; Kaewsapsak, Pornchai; Xu, Jin; Boettiger, Alistair N.; Chang, Howard Y.; Ting, Alice Y. (2019-07-11). "Atlas of Subcellular RNA Localization Revealed by APEX-Seq". Cell. 178 (2): 473–490.e26. doi:10.1016/j.cell.2019.05.027. ISSN 0092-8674. PMC 6786773. PMID 31230715.
Mukherjee, Joyita; Hermesh, Orit; Eliscovich, Carolina; Nalpas, Nicolas; Franz-Wachtel, Mirita; Maček, Boris; Jansen, Ralf-Peter (2019-06-25). "β-Actin mRNA interactome mapping by proximity biotinylation". Proceedings of the National Academy of Sciences. 116 (26): 12863–12872. Bibcode:2019PNAS..11612863M. doi:10.1073/pnas.1820737116. ISSN 0027-8424. PMC 6600913. PMID 31189591.
Zhang, Yongliang; Song, Gaoyuan; Lal, Neeraj K.; Nagalakshmi, Ugrappa; Li, Yuanyuan; Zheng, Wenjie; Huang, Pin-jui; Branon, Tess C.; Ting, Alice Y.; Walley, Justin W.; Dinesh-Kumar, Savithramma P. (2019-07-19). "TurboID-based proximity labeling reveals that UBR7 is a regulator of N NLR immune receptor-mediated immunity". Nature Communications. 10 (1): 3252. Bibcode:2019NatCo..10.3252Z. doi:10.1038/s41467-019-11202-z. ISSN 2041-1723. PMC 6642208. PMID 31324801.
Thuault, Sylvie; Mamelonet, Claire; Salameh, Joëlle; Ostacolo, Kevin; Chanez, Brice; Salaün, Danièle; Baudelet, Emilie; Audebert, Stéphane; Camoin, Luc; Badache, Ali (2020-04-22). "A proximity-labeling proteomic approach to investigate invadopodia molecular landscape in breast cancer cells". Scientific Reports. 10 (1): 6787. Bibcode:2020NatSR..10.6787T. doi:10.1038/s41598-020-63926-4. ISSN 2045-2322. PMC 7176661. PMID 32321993.
Minde, David-Paul; Ramakrishna, Manasa; Lilley, Kathryn S. (2020-01-22). "Biotin proximity tagging favours unfolded proteins and enables the study of intrinsically disordered regions". Communications Biology. 3 (1): 38. doi:10.1038/s42003-020-0758-y. ISSN 2399-3642. PMC 6976632. PMID 31969649.
Tamura, Tomonori; Takato, Mikiko; Shiono, Keiya; Hamachi, Itaru (2019-12-05). "Development of a Photoactivatable Proximity Labeling Method for the Identification of Nuclear Proteins". Chemistry Letters. 49 (2): 145–148. doi:10.1246/cl.190804. ISSN 0366-7022.
Geri, Jacob B.; Oakley, James V.; Reyes-Robles, Tamara; Wang, Tao; McCarver, Stefan J.; White, Cory H.; Rodriguez-Rivera, Frances P.; Parker, Dann L.; Hett, Erik C.; Fadeyi, Olugbeminiyi O.; Oslund, Rob C.; MacMillan, David W. C. (6 March 2020). "Microenvironment mapping via Dexter energy transfer on immune cells". Science. 367 (6482): 1091–1097. doi:10.1126/science.aay4106.

endpts.com

Cross, Ryan (June 13, 2024). "Former Merck scientists raise $85M to map and drug protein interactions in cancer and autoimmune disease". Endpoints News.

handle.net

hdl.handle.net

Lam, Stephanie S.; Martell, Jeffrey D.; Kamer, Kimberli J.; Deerinck, Thomas J.; Ellisman, Mark H.; Mootha, Vamsi K.; Ting, Alice Y. (January 2015). "Directed evolution of APEX2 for electron microscopy and proximity labeling". Nature Methods. 12 (1): 51–54. doi:10.1038/nmeth.3179. hdl:1721.1/110613. ISSN 1548-7105. PMC 4296904. PMID 25419960.

harvard.edu

ui.adsabs.harvard.edu

Rhee, Hyun-Woo; Zou, Peng; Udeshi, Namrata D.; Martell, Jeffrey D.; Mootha, Vamsi K.; Carr, Steven A.; Ting, Alice Y. (2013-03-15). "Proteomic Mapping of Mitochondria in Living Cells via Spatially Restricted Enzymatic Tagging". Science. 339 (6125): 1328–1331. Bibcode:2013Sci...339.1328R. doi:10.1126/science.1230593. ISSN 0036-8075. PMC 3916822. PMID 23371551.
Mukherjee, Joyita; Hermesh, Orit; Eliscovich, Carolina; Nalpas, Nicolas; Franz-Wachtel, Mirita; Maček, Boris; Jansen, Ralf-Peter (2019-06-25). "β-Actin mRNA interactome mapping by proximity biotinylation". Proceedings of the National Academy of Sciences. 116 (26): 12863–12872. Bibcode:2019PNAS..11612863M. doi:10.1073/pnas.1820737116. ISSN 0027-8424. PMC 6600913. PMID 31189591.
Zhang, Yongliang; Song, Gaoyuan; Lal, Neeraj K.; Nagalakshmi, Ugrappa; Li, Yuanyuan; Zheng, Wenjie; Huang, Pin-jui; Branon, Tess C.; Ting, Alice Y.; Walley, Justin W.; Dinesh-Kumar, Savithramma P. (2019-07-19). "TurboID-based proximity labeling reveals that UBR7 is a regulator of N NLR immune receptor-mediated immunity". Nature Communications. 10 (1): 3252. Bibcode:2019NatCo..10.3252Z. doi:10.1038/s41467-019-11202-z. ISSN 2041-1723. PMC 6642208. PMID 31324801.
Thuault, Sylvie; Mamelonet, Claire; Salameh, Joëlle; Ostacolo, Kevin; Chanez, Brice; Salaün, Danièle; Baudelet, Emilie; Audebert, Stéphane; Camoin, Luc; Badache, Ali (2020-04-22). "A proximity-labeling proteomic approach to investigate invadopodia molecular landscape in breast cancer cells". Scientific Reports. 10 (1): 6787. Bibcode:2020NatSR..10.6787T. doi:10.1038/s41598-020-63926-4. ISSN 2045-2322. PMC 7176661. PMID 32321993.

nature.com

Steensel, Bas van; Henikoff, Steven (April 2000). "Identification of in vivo DNA targets of chromatin proteins using tethered Dam methyltransferase". Nature Biotechnology. 18 (4): 424–428. doi:10.1038/74487. ISSN 1546-1696. PMID 10748524. S2CID 30350384.

nih.gov

pubmed.ncbi.nlm.nih.gov

Roux, Kyle J.; Kim, Dae In; Raida, Manfred; Burke, Brian (2012-03-19). "A promiscuous biotin ligase fusion protein identifies proximal and interacting proteins in mammalian cells". Journal of Cell Biology. 196 (6): 801–810. doi:10.1083/jcb.201112098. ISSN 0021-9525. PMC 3308701. PMID 22412018.
Han, Shuo; Li, Jiefu; Ting, Alice Y (2018-06-01). "Proximity labeling: spatially resolved proteomic mapping for neurobiology". Current Opinion in Neurobiology. Neurotechnologies. 50: 17–23. doi:10.1016/j.conb.2017.10.015. ISSN 0959-4388. PMC 6726430. PMID 29125959.
Trinkle-Mulcahy, Laura (2019-01-31). "Recent advances in proximity-based labeling methods for interactome mapping". F1000Research. 8: 135. doi:10.12688/f1000research.16903.1. ISSN 2046-1402. PMC 6357996. PMID 30774936.
Steensel, Bas van; Henikoff, Steven (April 2000). "Identification of in vivo DNA targets of chromatin proteins using tethered Dam methyltransferase". Nature Biotechnology. 18 (4): 424–428. doi:10.1038/74487. ISSN 1546-1696. PMID 10748524. S2CID 30350384.
Branon, Tess C.; Bosch, Justin A.; Sanchez, Ariana D.; Udeshi, Namrata D.; Svinkina, Tanya; Carr, Steven A.; Feldman, Jessica L.; Perrimon, Norbert; Ting, Alice Y. (2018-10-01). "Efficient proximity labeling in living cells and organisms with TurboID". Nature Biotechnology. 36 (9): 880–887. doi:10.1038/nbt.4201. ISSN 1546-1696. PMC 6126969. PMID 30125270.
Rhee, Hyun-Woo; Zou, Peng; Udeshi, Namrata D.; Martell, Jeffrey D.; Mootha, Vamsi K.; Carr, Steven A.; Ting, Alice Y. (2013-03-15). "Proteomic Mapping of Mitochondria in Living Cells via Spatially Restricted Enzymatic Tagging". Science. 339 (6125): 1328–1331. Bibcode:2013Sci...339.1328R. doi:10.1126/science.1230593. ISSN 0036-8075. PMC 3916822. PMID 23371551.
Lam, Stephanie S.; Martell, Jeffrey D.; Kamer, Kimberli J.; Deerinck, Thomas J.; Ellisman, Mark H.; Mootha, Vamsi K.; Ting, Alice Y. (January 2015). "Directed evolution of APEX2 for electron microscopy and proximity labeling". Nature Methods. 12 (1): 51–54. doi:10.1038/nmeth.3179. hdl:1721.1/110613. ISSN 1548-7105. PMC 4296904. PMID 25419960.
Kalocsay, Marian (2019). "APEX Peroxidase-Catalyzed Proximity Labeling and Multiplexed Quantitative Proteomics". In Sunbul, Murat; Jäschke, Andres (eds.). Proximity Labeling: Methods and Protocols. Methods in Molecular Biology. Vol. 2008. Springer. pp. 41–55. doi:10.1007/978-1-4939-9537-0_4. ISBN 978-1-4939-9537-0. PMID 31124087. S2CID 163166385.
Rees, Johanna S.; Li, Xue-Wen; Perrett, Sarah; Lilley, Kathryn S.; Jackson, Antony P. (2015-11-01). "Protein Neighbors and Proximity Proteomics". Molecular & Cellular Proteomics. 14 (11): 2848–2856. doi:10.1074/mcp.R115.052902. ISSN 1535-9476. PMC 4638030. PMID 26355100.
Bar, Daniel Z; Atkatsh, Kathleen; Tavarez, Urraca; Erdos, Michael R; Gruenbaum, Yosef; Collins, Francis S (February 2018). "Biotinylation by antibody recognition - A method for proximity labeling". Nature Methods. 15 (2): 127–133. doi:10.1038/nmeth.4533. ISSN 1548-7091. PMC 5790613. PMID 29256494.
Mick, David U.; Rodrigues, Rachel B.; Leib, Ryan D.; Adams, Christopher M.; Chien, Allis S.; Gygi, Steven P.; Nachury, Maxence V. (2015-11-23). "Proteomics of Primary Cilia by Proximity Labeling". Developmental Cell. 35 (4): 497–512. doi:10.1016/j.devcel.2015.10.015. ISSN 1878-1551. PMC 4662609. PMID 26585297.
Youn, Ji-Young; Dunham, Wade H.; Hong, Seo Jung; Knight, James D.R.; Bashkurov, Mikhail; Chen, Ginny I.; Bagci, Halil; Rathod, Bhavisha; MacLeod, Graham; Eng, Simon W.M.; Angers, Stéphane (February 2018). "High-Density Proximity Mapping Reveals the Subcellular Organization of mRNA-Associated Granules and Bodies". Molecular Cell. 69 (3): 517–532.e11. doi:10.1016/j.molcel.2017.12.020. ISSN 1097-2765. PMID 29395067.
Bersuker, Kirill; Peterson, Clark W. H.; To, Milton; Sahl, Steffen J.; Savikhin, Victoria; Grossman, Elizabeth A.; Nomura, Daniel K.; Olzmann, James A. (2018-01-08). "A Proximity Labeling Strategy Provides Insights into the Composition and Dynamics of Lipid Droplet Proteomes". Developmental Cell. 44 (1): 97–112.e7. doi:10.1016/j.devcel.2017.11.020. ISSN 1534-5807. PMC 5764092. PMID 29275994.
Paek, Jaeho; Kalocsay, Marian; Staus, Dean P.; Wingler, Laura; Pascolutti, Roberta; Paulo, Joao A.; Gygi, Steven P.; Kruse, Andrew C. (6 April 2017). "Multidimensional Tracking of GPCR Signaling via Peroxidase-Catalyzed Proximity Labeling". Cell. 169 (2): 338–349.e11. doi:10.1016/j.cell.2017.03.028. ISSN 1097-4172. PMC 5514552. PMID 28388415.
Lobingier, Braden T.; Hüttenhain, Ruth; Eichel, Kelsie; Miller, Kenneth B.; Ting, Alice Y.; von Zastrow, Mark; Krogan, Nevan J. (6 April 2017). "An Approach to Spatiotemporally Resolve Protein Interaction Networks in Living Cells". Cell. 169 (2): 350–360.e12. doi:10.1016/j.cell.2017.03.022. ISSN 1097-4172. PMC 5616215. PMID 28388416.
Shields, Emily J.; Petracovici, Ana F.; Bonasio, Roberto (2019-04-15). "lncRedibly versatile: biochemical and biological functions of long noncoding RNAs". Biochemical Journal. 476 (7): 1083–1104. doi:10.1042/BCJ20180440. ISSN 0264-6021. PMC 6745715. PMID 30971458.
Fazal, Furqan M.; Han, Shuo; Parker, Kevin R.; Kaewsapsak, Pornchai; Xu, Jin; Boettiger, Alistair N.; Chang, Howard Y.; Ting, Alice Y. (2019-07-11). "Atlas of Subcellular RNA Localization Revealed by APEX-Seq". Cell. 178 (2): 473–490.e26. doi:10.1016/j.cell.2019.05.027. ISSN 0092-8674. PMC 6786773. PMID 31230715.
Mukherjee, Joyita; Hermesh, Orit; Eliscovich, Carolina; Nalpas, Nicolas; Franz-Wachtel, Mirita; Maček, Boris; Jansen, Ralf-Peter (2019-06-25). "β-Actin mRNA interactome mapping by proximity biotinylation". Proceedings of the National Academy of Sciences. 116 (26): 12863–12872. Bibcode:2019PNAS..11612863M. doi:10.1073/pnas.1820737116. ISSN 0027-8424. PMC 6600913. PMID 31189591.
Zhang, Yongliang; Song, Gaoyuan; Lal, Neeraj K.; Nagalakshmi, Ugrappa; Li, Yuanyuan; Zheng, Wenjie; Huang, Pin-jui; Branon, Tess C.; Ting, Alice Y.; Walley, Justin W.; Dinesh-Kumar, Savithramma P. (2019-07-19). "TurboID-based proximity labeling reveals that UBR7 is a regulator of N NLR immune receptor-mediated immunity". Nature Communications. 10 (1): 3252. Bibcode:2019NatCo..10.3252Z. doi:10.1038/s41467-019-11202-z. ISSN 2041-1723. PMC 6642208. PMID 31324801.
Thuault, Sylvie; Mamelonet, Claire; Salameh, Joëlle; Ostacolo, Kevin; Chanez, Brice; Salaün, Danièle; Baudelet, Emilie; Audebert, Stéphane; Camoin, Luc; Badache, Ali (2020-04-22). "A proximity-labeling proteomic approach to investigate invadopodia molecular landscape in breast cancer cells". Scientific Reports. 10 (1): 6787. Bibcode:2020NatSR..10.6787T. doi:10.1038/s41598-020-63926-4. ISSN 2045-2322. PMC 7176661. PMID 32321993.
Minde, David-Paul; Ramakrishna, Manasa; Lilley, Kathryn S. (2020-01-22). "Biotin proximity tagging favours unfolded proteins and enables the study of intrinsically disordered regions". Communications Biology. 3 (1): 38. doi:10.1038/s42003-020-0758-y. ISSN 2399-3642. PMC 6976632. PMID 31969649.

ncbi.nlm.nih.gov

Roux, Kyle J.; Kim, Dae In; Raida, Manfred; Burke, Brian (2012-03-19). "A promiscuous biotin ligase fusion protein identifies proximal and interacting proteins in mammalian cells". Journal of Cell Biology. 196 (6): 801–810. doi:10.1083/jcb.201112098. ISSN 0021-9525. PMC 3308701. PMID 22412018.
Han, Shuo; Li, Jiefu; Ting, Alice Y (2018-06-01). "Proximity labeling: spatially resolved proteomic mapping for neurobiology". Current Opinion in Neurobiology. Neurotechnologies. 50: 17–23. doi:10.1016/j.conb.2017.10.015. ISSN 0959-4388. PMC 6726430. PMID 29125959.
Trinkle-Mulcahy, Laura (2019-01-31). "Recent advances in proximity-based labeling methods for interactome mapping". F1000Research. 8: 135. doi:10.12688/f1000research.16903.1. ISSN 2046-1402. PMC 6357996. PMID 30774936.
Branon, Tess C.; Bosch, Justin A.; Sanchez, Ariana D.; Udeshi, Namrata D.; Svinkina, Tanya; Carr, Steven A.; Feldman, Jessica L.; Perrimon, Norbert; Ting, Alice Y. (2018-10-01). "Efficient proximity labeling in living cells and organisms with TurboID". Nature Biotechnology. 36 (9): 880–887. doi:10.1038/nbt.4201. ISSN 1546-1696. PMC 6126969. PMID 30125270.
Rhee, Hyun-Woo; Zou, Peng; Udeshi, Namrata D.; Martell, Jeffrey D.; Mootha, Vamsi K.; Carr, Steven A.; Ting, Alice Y. (2013-03-15). "Proteomic Mapping of Mitochondria in Living Cells via Spatially Restricted Enzymatic Tagging". Science. 339 (6125): 1328–1331. Bibcode:2013Sci...339.1328R. doi:10.1126/science.1230593. ISSN 0036-8075. PMC 3916822. PMID 23371551.
Lam, Stephanie S.; Martell, Jeffrey D.; Kamer, Kimberli J.; Deerinck, Thomas J.; Ellisman, Mark H.; Mootha, Vamsi K.; Ting, Alice Y. (January 2015). "Directed evolution of APEX2 for electron microscopy and proximity labeling". Nature Methods. 12 (1): 51–54. doi:10.1038/nmeth.3179. hdl:1721.1/110613. ISSN 1548-7105. PMC 4296904. PMID 25419960.
Rees, Johanna S.; Li, Xue-Wen; Perrett, Sarah; Lilley, Kathryn S.; Jackson, Antony P. (2015-11-01). "Protein Neighbors and Proximity Proteomics". Molecular & Cellular Proteomics. 14 (11): 2848–2856. doi:10.1074/mcp.R115.052902. ISSN 1535-9476. PMC 4638030. PMID 26355100.
Bar, Daniel Z; Atkatsh, Kathleen; Tavarez, Urraca; Erdos, Michael R; Gruenbaum, Yosef; Collins, Francis S (February 2018). "Biotinylation by antibody recognition - A method for proximity labeling". Nature Methods. 15 (2): 127–133. doi:10.1038/nmeth.4533. ISSN 1548-7091. PMC 5790613. PMID 29256494.
Mick, David U.; Rodrigues, Rachel B.; Leib, Ryan D.; Adams, Christopher M.; Chien, Allis S.; Gygi, Steven P.; Nachury, Maxence V. (2015-11-23). "Proteomics of Primary Cilia by Proximity Labeling". Developmental Cell. 35 (4): 497–512. doi:10.1016/j.devcel.2015.10.015. ISSN 1878-1551. PMC 4662609. PMID 26585297.
Bersuker, Kirill; Peterson, Clark W. H.; To, Milton; Sahl, Steffen J.; Savikhin, Victoria; Grossman, Elizabeth A.; Nomura, Daniel K.; Olzmann, James A. (2018-01-08). "A Proximity Labeling Strategy Provides Insights into the Composition and Dynamics of Lipid Droplet Proteomes". Developmental Cell. 44 (1): 97–112.e7. doi:10.1016/j.devcel.2017.11.020. ISSN 1534-5807. PMC 5764092. PMID 29275994.
Paek, Jaeho; Kalocsay, Marian; Staus, Dean P.; Wingler, Laura; Pascolutti, Roberta; Paulo, Joao A.; Gygi, Steven P.; Kruse, Andrew C. (6 April 2017). "Multidimensional Tracking of GPCR Signaling via Peroxidase-Catalyzed Proximity Labeling". Cell. 169 (2): 338–349.e11. doi:10.1016/j.cell.2017.03.028. ISSN 1097-4172. PMC 5514552. PMID 28388415.
Lobingier, Braden T.; Hüttenhain, Ruth; Eichel, Kelsie; Miller, Kenneth B.; Ting, Alice Y.; von Zastrow, Mark; Krogan, Nevan J. (6 April 2017). "An Approach to Spatiotemporally Resolve Protein Interaction Networks in Living Cells". Cell. 169 (2): 350–360.e12. doi:10.1016/j.cell.2017.03.022. ISSN 1097-4172. PMC 5616215. PMID 28388416.
Shields, Emily J.; Petracovici, Ana F.; Bonasio, Roberto (2019-04-15). "lncRedibly versatile: biochemical and biological functions of long noncoding RNAs". Biochemical Journal. 476 (7): 1083–1104. doi:10.1042/BCJ20180440. ISSN 0264-6021. PMC 6745715. PMID 30971458.
Fazal, Furqan M.; Han, Shuo; Parker, Kevin R.; Kaewsapsak, Pornchai; Xu, Jin; Boettiger, Alistair N.; Chang, Howard Y.; Ting, Alice Y. (2019-07-11). "Atlas of Subcellular RNA Localization Revealed by APEX-Seq". Cell. 178 (2): 473–490.e26. doi:10.1016/j.cell.2019.05.027. ISSN 0092-8674. PMC 6786773. PMID 31230715.
Mukherjee, Joyita; Hermesh, Orit; Eliscovich, Carolina; Nalpas, Nicolas; Franz-Wachtel, Mirita; Maček, Boris; Jansen, Ralf-Peter (2019-06-25). "β-Actin mRNA interactome mapping by proximity biotinylation". Proceedings of the National Academy of Sciences. 116 (26): 12863–12872. Bibcode:2019PNAS..11612863M. doi:10.1073/pnas.1820737116. ISSN 0027-8424. PMC 6600913. PMID 31189591.
Zhang, Yongliang; Song, Gaoyuan; Lal, Neeraj K.; Nagalakshmi, Ugrappa; Li, Yuanyuan; Zheng, Wenjie; Huang, Pin-jui; Branon, Tess C.; Ting, Alice Y.; Walley, Justin W.; Dinesh-Kumar, Savithramma P. (2019-07-19). "TurboID-based proximity labeling reveals that UBR7 is a regulator of N NLR immune receptor-mediated immunity". Nature Communications. 10 (1): 3252. Bibcode:2019NatCo..10.3252Z. doi:10.1038/s41467-019-11202-z. ISSN 2041-1723. PMC 6642208. PMID 31324801.
Thuault, Sylvie; Mamelonet, Claire; Salameh, Joëlle; Ostacolo, Kevin; Chanez, Brice; Salaün, Danièle; Baudelet, Emilie; Audebert, Stéphane; Camoin, Luc; Badache, Ali (2020-04-22). "A proximity-labeling proteomic approach to investigate invadopodia molecular landscape in breast cancer cells". Scientific Reports. 10 (1): 6787. Bibcode:2020NatSR..10.6787T. doi:10.1038/s41598-020-63926-4. ISSN 2045-2322. PMC 7176661. PMID 32321993.
Minde, David-Paul; Ramakrishna, Manasa; Lilley, Kathryn S. (2020-01-22). "Biotin proximity tagging favours unfolded proteins and enables the study of intrinsically disordered regions". Communications Biology. 3 (1): 38. doi:10.1038/s42003-020-0758-y. ISSN 2399-3642. PMC 6976632. PMID 31969649.

science.org

Geri, Jacob B.; Oakley, James V.; Reyes-Robles, Tamara; Wang, Tao; McCarver, Stefan J.; White, Cory H.; Rodriguez-Rivera, Frances P.; Parker, Dann L.; Hett, Erik C.; Fadeyi, Olugbeminiyi O.; Oslund, Rob C.; MacMillan, David W. C. (6 March 2020). "Microenvironment mapping via Dexter energy transfer on immune cells". Science. 367 (6482): 1091–1097. doi:10.1126/science.aay4106.

semanticscholar.org

api.semanticscholar.org

Steensel, Bas van; Henikoff, Steven (April 2000). "Identification of in vivo DNA targets of chromatin proteins using tethered Dam methyltransferase". Nature Biotechnology. 18 (4): 424–428. doi:10.1038/74487. ISSN 1546-1696. PMID 10748524. S2CID 30350384.
Kalocsay, Marian (2019). "APEX Peroxidase-Catalyzed Proximity Labeling and Multiplexed Quantitative Proteomics". In Sunbul, Murat; Jäschke, Andres (eds.). Proximity Labeling: Methods and Protocols. Methods in Molecular Biology. Vol. 2008. Springer. pp. 41–55. doi:10.1007/978-1-4939-9537-0_4. ISBN 978-1-4939-9537-0. PMID 31124087. S2CID 163166385.

worldcat.org

search.worldcat.org

Roux, Kyle J.; Kim, Dae In; Raida, Manfred; Burke, Brian (2012-03-19). "A promiscuous biotin ligase fusion protein identifies proximal and interacting proteins in mammalian cells". Journal of Cell Biology. 196 (6): 801–810. doi:10.1083/jcb.201112098. ISSN 0021-9525. PMC 3308701. PMID 22412018.
Han, Shuo; Li, Jiefu; Ting, Alice Y (2018-06-01). "Proximity labeling: spatially resolved proteomic mapping for neurobiology". Current Opinion in Neurobiology. Neurotechnologies. 50: 17–23. doi:10.1016/j.conb.2017.10.015. ISSN 0959-4388. PMC 6726430. PMID 29125959.
Trinkle-Mulcahy, Laura (2019-01-31). "Recent advances in proximity-based labeling methods for interactome mapping". F1000Research. 8: 135. doi:10.12688/f1000research.16903.1. ISSN 2046-1402. PMC 6357996. PMID 30774936.
Steensel, Bas van; Henikoff, Steven (April 2000). "Identification of in vivo DNA targets of chromatin proteins using tethered Dam methyltransferase". Nature Biotechnology. 18 (4): 424–428. doi:10.1038/74487. ISSN 1546-1696. PMID 10748524. S2CID 30350384.
Branon, Tess C.; Bosch, Justin A.; Sanchez, Ariana D.; Udeshi, Namrata D.; Svinkina, Tanya; Carr, Steven A.; Feldman, Jessica L.; Perrimon, Norbert; Ting, Alice Y. (2018-10-01). "Efficient proximity labeling in living cells and organisms with TurboID". Nature Biotechnology. 36 (9): 880–887. doi:10.1038/nbt.4201. ISSN 1546-1696. PMC 6126969. PMID 30125270.
Rhee, Hyun-Woo; Zou, Peng; Udeshi, Namrata D.; Martell, Jeffrey D.; Mootha, Vamsi K.; Carr, Steven A.; Ting, Alice Y. (2013-03-15). "Proteomic Mapping of Mitochondria in Living Cells via Spatially Restricted Enzymatic Tagging". Science. 339 (6125): 1328–1331. Bibcode:2013Sci...339.1328R. doi:10.1126/science.1230593. ISSN 0036-8075. PMC 3916822. PMID 23371551.
Lam, Stephanie S.; Martell, Jeffrey D.; Kamer, Kimberli J.; Deerinck, Thomas J.; Ellisman, Mark H.; Mootha, Vamsi K.; Ting, Alice Y. (January 2015). "Directed evolution of APEX2 for electron microscopy and proximity labeling". Nature Methods. 12 (1): 51–54. doi:10.1038/nmeth.3179. hdl:1721.1/110613. ISSN 1548-7105. PMC 4296904. PMID 25419960.
Rees, Johanna S.; Li, Xue-Wen; Perrett, Sarah; Lilley, Kathryn S.; Jackson, Antony P. (2015-11-01). "Protein Neighbors and Proximity Proteomics". Molecular & Cellular Proteomics. 14 (11): 2848–2856. doi:10.1074/mcp.R115.052902. ISSN 1535-9476. PMC 4638030. PMID 26355100.
Bar, Daniel Z; Atkatsh, Kathleen; Tavarez, Urraca; Erdos, Michael R; Gruenbaum, Yosef; Collins, Francis S (February 2018). "Biotinylation by antibody recognition - A method for proximity labeling". Nature Methods. 15 (2): 127–133. doi:10.1038/nmeth.4533. ISSN 1548-7091. PMC 5790613. PMID 29256494.
Mick, David U.; Rodrigues, Rachel B.; Leib, Ryan D.; Adams, Christopher M.; Chien, Allis S.; Gygi, Steven P.; Nachury, Maxence V. (2015-11-23). "Proteomics of Primary Cilia by Proximity Labeling". Developmental Cell. 35 (4): 497–512. doi:10.1016/j.devcel.2015.10.015. ISSN 1878-1551. PMC 4662609. PMID 26585297.
Youn, Ji-Young; Dunham, Wade H.; Hong, Seo Jung; Knight, James D.R.; Bashkurov, Mikhail; Chen, Ginny I.; Bagci, Halil; Rathod, Bhavisha; MacLeod, Graham; Eng, Simon W.M.; Angers, Stéphane (February 2018). "High-Density Proximity Mapping Reveals the Subcellular Organization of mRNA-Associated Granules and Bodies". Molecular Cell. 69 (3): 517–532.e11. doi:10.1016/j.molcel.2017.12.020. ISSN 1097-2765. PMID 29395067.
Bersuker, Kirill; Peterson, Clark W. H.; To, Milton; Sahl, Steffen J.; Savikhin, Victoria; Grossman, Elizabeth A.; Nomura, Daniel K.; Olzmann, James A. (2018-01-08). "A Proximity Labeling Strategy Provides Insights into the Composition and Dynamics of Lipid Droplet Proteomes". Developmental Cell. 44 (1): 97–112.e7. doi:10.1016/j.devcel.2017.11.020. ISSN 1534-5807. PMC 5764092. PMID 29275994.
Paek, Jaeho; Kalocsay, Marian; Staus, Dean P.; Wingler, Laura; Pascolutti, Roberta; Paulo, Joao A.; Gygi, Steven P.; Kruse, Andrew C. (6 April 2017). "Multidimensional Tracking of GPCR Signaling via Peroxidase-Catalyzed Proximity Labeling". Cell. 169 (2): 338–349.e11. doi:10.1016/j.cell.2017.03.028. ISSN 1097-4172. PMC 5514552. PMID 28388415.
Lobingier, Braden T.; Hüttenhain, Ruth; Eichel, Kelsie; Miller, Kenneth B.; Ting, Alice Y.; von Zastrow, Mark; Krogan, Nevan J. (6 April 2017). "An Approach to Spatiotemporally Resolve Protein Interaction Networks in Living Cells". Cell. 169 (2): 350–360.e12. doi:10.1016/j.cell.2017.03.022. ISSN 1097-4172. PMC 5616215. PMID 28388416.
Shields, Emily J.; Petracovici, Ana F.; Bonasio, Roberto (2019-04-15). "lncRedibly versatile: biochemical and biological functions of long noncoding RNAs". Biochemical Journal. 476 (7): 1083–1104. doi:10.1042/BCJ20180440. ISSN 0264-6021. PMC 6745715. PMID 30971458.
Fazal, Furqan M.; Han, Shuo; Parker, Kevin R.; Kaewsapsak, Pornchai; Xu, Jin; Boettiger, Alistair N.; Chang, Howard Y.; Ting, Alice Y. (2019-07-11). "Atlas of Subcellular RNA Localization Revealed by APEX-Seq". Cell. 178 (2): 473–490.e26. doi:10.1016/j.cell.2019.05.027. ISSN 0092-8674. PMC 6786773. PMID 31230715.
Mukherjee, Joyita; Hermesh, Orit; Eliscovich, Carolina; Nalpas, Nicolas; Franz-Wachtel, Mirita; Maček, Boris; Jansen, Ralf-Peter (2019-06-25). "β-Actin mRNA interactome mapping by proximity biotinylation". Proceedings of the National Academy of Sciences. 116 (26): 12863–12872. Bibcode:2019PNAS..11612863M. doi:10.1073/pnas.1820737116. ISSN 0027-8424. PMC 6600913. PMID 31189591.
Zhang, Yongliang; Song, Gaoyuan; Lal, Neeraj K.; Nagalakshmi, Ugrappa; Li, Yuanyuan; Zheng, Wenjie; Huang, Pin-jui; Branon, Tess C.; Ting, Alice Y.; Walley, Justin W.; Dinesh-Kumar, Savithramma P. (2019-07-19). "TurboID-based proximity labeling reveals that UBR7 is a regulator of N NLR immune receptor-mediated immunity". Nature Communications. 10 (1): 3252. Bibcode:2019NatCo..10.3252Z. doi:10.1038/s41467-019-11202-z. ISSN 2041-1723. PMC 6642208. PMID 31324801.
Thuault, Sylvie; Mamelonet, Claire; Salameh, Joëlle; Ostacolo, Kevin; Chanez, Brice; Salaün, Danièle; Baudelet, Emilie; Audebert, Stéphane; Camoin, Luc; Badache, Ali (2020-04-22). "A proximity-labeling proteomic approach to investigate invadopodia molecular landscape in breast cancer cells". Scientific Reports. 10 (1): 6787. Bibcode:2020NatSR..10.6787T. doi:10.1038/s41598-020-63926-4. ISSN 2045-2322. PMC 7176661. PMID 32321993.
Minde, David-Paul; Ramakrishna, Manasa; Lilley, Kathryn S. (2020-01-22). "Biotin proximity tagging favours unfolded proteins and enables the study of intrinsically disordered regions". Communications Biology. 3 (1): 38. doi:10.1038/s42003-020-0758-y. ISSN 2399-3642. PMC 6976632. PMID 31969649.
Tamura, Tomonori; Takato, Mikiko; Shiono, Keiya; Hamachi, Itaru (2019-12-05). "Development of a Photoactivatable Proximity Labeling Method for the Identification of Nuclear Proteins". Chemistry Letters. 49 (2): 145–148. doi:10.1246/cl.190804. ISSN 0366-7022.