PyClone (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "PyClone" in English language version.

refsWebsite

Global rank English rank

16nih.gov

4^th place

13doi.org

2^nd place

10worldcat.org

5^th place

2semanticscholar.org

11^th place

8^th place

1aacrjournals.org

8,869^th place

8,487^th place

1illumina.com

low place

1bloodjournal.org

low place

1arxiv.org

69^th place

59^th place

aacrjournals.org

cancerres.aacrjournals.org

Fearon, Eric R.; Wu, Rong; Greenson, Joel K.; Ulintz, Peter J.; Hardiman, Karin M. (2017-02-01). "Abstract PR07: Complex sub-clonal populations in colorectal cancer lymph node metastasis". Cancer Research. 77 (3 Supplement): PR07. doi:10.1158/1538-7445.CRC16-PR07. ISSN 0008-5472.

arxiv.org

Markowetz, Florian; Rosenfeld, Nitzan; Yuan, Ke; Mouliere, Florent; Marass, Francesco (2016-04-06). "A phylogenetic latent feature model for clonal deconvolution". The Annals of Applied Statistics. 10 (4): 2377–2404. arXiv:1604.01715. doi:10.1214/16-AOAS986. S2CID 14986879.

bloodjournal.org

Maciejewski, Jaroslaw P.; Ogawa, Seishi; Shih, Lee-Yung; Miyano, Satoru; Chiba, Shigeru; Saunthararajah, Yogen; Miyawaki, Shuichi; Nakamaki, Tsuyoshi; Dienes, Brittney (2015-12-03). "Serial Sequencing in Myelodysplastic Syndromes Reveals Dynamic Changes in Clonal Architecture and Allows for a New Prognostic Assessment of Mutations Detected in Cross-Sectional Testing". Blood. 126 (23): 709. doi:10.1182/blood.V126.23.709.709. ISSN 0006-4971.

doi.org

Fearon, Eric R.; Wu, Rong; Greenson, Joel K.; Ulintz, Peter J.; Hardiman, Karin M. (2017-02-01). "Abstract PR07: Complex sub-clonal populations in colorectal cancer lymph node metastasis". Cancer Research. 77 (3 Supplement): PR07. doi:10.1158/1538-7445.CRC16-PR07. ISSN 0008-5472.
Shah, Sohrab P.; Bouchard-Côté, Alexandre; Aparicio, Samuel; Ha, Gavin; Justina Biele; Laks, Emma; Wan, Adrian; Yap, Damian; Khattra, Jaswinder (April 2014). "PyClone: statistical inference of clonal population structure in cancer". Nature Methods. 11 (4): 396–398. doi:10.1038/nmeth.2883. ISSN 1548-7105. PMC 4864026. PMID 24633410.
Blanchette, Mathieu; Pastinen, Tomi; Gunderson, Kevin L.; Pokholok, Dmitry; Ge, Bing; Wagner, James R. (2010-07-08). "Computational Analysis of Whole-Genome Differential Allelic Expression Data in Human". PLOS Computational Biology. 6 (7): e1000849. doi:10.1371/journal.pcbi.1000849. ISSN 1553-7358. PMC 2900287. PMID 20628616.
Hanson, K.M. (May 1993). "Bayesian reconstruction based on flexible prior models". J. Opt. Soc. Am. A. 10 (5): 997. doi:10.1364/JOSAA.10.000997. S2CID 17551149.
Aparicio, Samuel; Shah, Sohrab P.; Caldas, Carlos; Marra, Marco A.; Hansen, Carl; Eaves, Connie J.; Huntsman, David; Nguyen, Long; Lorette, Julie (February 2015). "Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution". Nature. 518 (7539): 422–426. doi:10.1038/nature13952. ISSN 1476-4687. PMC 4864027. PMID 25470049.
Caldas, Carlos; Rosenfeld, Nitzan; Wallis, Matthew; Shah, Sohrab P.; Bentley, David; Humphray, Sean; Kingsbury, Zoya; Shumansky, Karey; Farahani, Hossein (2015-11-04). "Multifocal clonal evolution characterized using circulating tumour DNA in a case of metastatic breast cancer". Nature Communications. 6: 8760. doi:10.1038/ncomms9760. ISSN 2041-1723. PMC 4659935. PMID 26530965.
Maciejewski, Jaroslaw P.; Ogawa, Seishi; Shih, Lee-Yung; Miyano, Satoru; Chiba, Shigeru; Saunthararajah, Yogen; Miyawaki, Shuichi; Nakamaki, Tsuyoshi; Dienes, Brittney (2015-12-03). "Serial Sequencing in Myelodysplastic Syndromes Reveals Dynamic Changes in Clonal Architecture and Allows for a New Prognostic Assessment of Mutations Detected in Cross-Sectional Testing". Blood. 126 (23): 709. doi:10.1182/blood.V126.23.709.709. ISSN 0006-4971.
Ding, Li; Wilson, Richard K.; Mardis, Elaine R.; Ley, Timothy J.; DiPersio, John F.; Schierding, William; Ellis, Matthew J.; Walter, Matthew J.; Graubert, Timothy A. (2014-08-07). "SciClone: Inferring Clonal Architecture and Tracking the Spatial and Temporal Patterns of Tumor Evolution". PLOS Computational Biology. 10 (8): e1003665. doi:10.1371/journal.pcbi.1003665. ISSN 1553-7358. PMC 4125065. PMID 25102416.
Noble, William Stafford; Blau, C. Anthony; Witten, Daniela; Song, ChaoZhong; Nickerson, Debbie; Smith, Josh; Weber, Kris; Hu, Alex; Wang, Junfeng (2014-07-10). "Inferring Clonal Composition from Multiple Sections of a Breast Cancer". PLOS Computational Biology. 10 (7): e1003703. doi:10.1371/journal.pcbi.1003703. ISSN 1553-7358. PMC 4091710. PMID 25010360.
Geng, Yu; Zhao, Zhongmeng; Xu, Jing; Liu, Ruoyu; Huang, Yi; Zhang, Xuanping; Xiao, Xiao; Maomao; Wang, Jiayin (2017). "Identifying Heterogeneity Patterns of Allelic Imbalance on Germline Variants to Infer Clonal Architecture". In Huang, De-Shuang; Jo, Kang-Hyun; Figueroa-García, Juan Carlos (eds.). Intelligent Computing Theories and Application. Lecture Notes in Computer Science. Vol. 10362. Springer International Publishing. pp. 286–297. doi:10.1007/978-3-319-63312-1_26. ISBN 978-3-319-63312-1.
Markowetz, Florian; Rosenfeld, Nitzan; Yuan, Ke; Mouliere, Florent; Marass, Francesco (2016-04-06). "A phylogenetic latent feature model for clonal deconvolution". The Annals of Applied Statistics. 10 (4): 2377–2404. arXiv:1604.01715. doi:10.1214/16-AOAS986. S2CID 14986879.
Shimamura, Teppei; Miyano, Satoru; Mimori, Koshi; Uchi, Ryutaro; Niida, Atsushi; Matsui, Yusuke (2017-05-01). "phyC: Clustering cancer evolutionary trees". PLOS Computational Biology. 13 (5): e1005509. doi:10.1371/journal.pcbi.1005509. ISSN 1553-7358. PMC 5432190. PMID 28459850.
Deshwar, Amit G.; Vembu, Shankar; Yung, Christina K.; Jang, Gun Ho; Stein, Lincoln; Morris, Quaid (2015-02-13). "PhyloWGS: Reconstructing subclonal composition and evolution from whole-genome sequencing of tumors". Genome Biology. 16 (1): 35. doi:10.1186/s13059-015-0602-8. ISSN 1465-6906. PMC 4359439. PMID 25786235.

illumina.com

"Deep Sequencing". www.illumina.com. Retrieved 2019-02-26.

nih.gov

ncbi.nlm.nih.gov

Shah, Sohrab P.; Bouchard-Côté, Alexandre; Aparicio, Samuel; Ha, Gavin; Justina Biele; Laks, Emma; Wan, Adrian; Yap, Damian; Khattra, Jaswinder (April 2014). "PyClone: statistical inference of clonal population structure in cancer". Nature Methods. 11 (4): 396–398. doi:10.1038/nmeth.2883. ISSN 1548-7105. PMC 4864026. PMID 24633410.
Blanchette, Mathieu; Pastinen, Tomi; Gunderson, Kevin L.; Pokholok, Dmitry; Ge, Bing; Wagner, James R. (2010-07-08). "Computational Analysis of Whole-Genome Differential Allelic Expression Data in Human". PLOS Computational Biology. 6 (7): e1000849. doi:10.1371/journal.pcbi.1000849. ISSN 1553-7358. PMC 2900287. PMID 20628616.
Aparicio, Samuel; Shah, Sohrab P.; Caldas, Carlos; Marra, Marco A.; Hansen, Carl; Eaves, Connie J.; Huntsman, David; Nguyen, Long; Lorette, Julie (February 2015). "Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution". Nature. 518 (7539): 422–426. doi:10.1038/nature13952. ISSN 1476-4687. PMC 4864027. PMID 25470049.
Caldas, Carlos; Rosenfeld, Nitzan; Wallis, Matthew; Shah, Sohrab P.; Bentley, David; Humphray, Sean; Kingsbury, Zoya; Shumansky, Karey; Farahani, Hossein (2015-11-04). "Multifocal clonal evolution characterized using circulating tumour DNA in a case of metastatic breast cancer". Nature Communications. 6: 8760. doi:10.1038/ncomms9760. ISSN 2041-1723. PMC 4659935. PMID 26530965.
Ding, Li; Wilson, Richard K.; Mardis, Elaine R.; Ley, Timothy J.; DiPersio, John F.; Schierding, William; Ellis, Matthew J.; Walter, Matthew J.; Graubert, Timothy A. (2014-08-07). "SciClone: Inferring Clonal Architecture and Tracking the Spatial and Temporal Patterns of Tumor Evolution". PLOS Computational Biology. 10 (8): e1003665. doi:10.1371/journal.pcbi.1003665. ISSN 1553-7358. PMC 4125065. PMID 25102416.
Noble, William Stafford; Blau, C. Anthony; Witten, Daniela; Song, ChaoZhong; Nickerson, Debbie; Smith, Josh; Weber, Kris; Hu, Alex; Wang, Junfeng (2014-07-10). "Inferring Clonal Composition from Multiple Sections of a Breast Cancer". PLOS Computational Biology. 10 (7): e1003703. doi:10.1371/journal.pcbi.1003703. ISSN 1553-7358. PMC 4091710. PMID 25010360.
Shimamura, Teppei; Miyano, Satoru; Mimori, Koshi; Uchi, Ryutaro; Niida, Atsushi; Matsui, Yusuke (2017-05-01). "phyC: Clustering cancer evolutionary trees". PLOS Computational Biology. 13 (5): e1005509. doi:10.1371/journal.pcbi.1005509. ISSN 1553-7358. PMC 5432190. PMID 28459850.
Deshwar, Amit G.; Vembu, Shankar; Yung, Christina K.; Jang, Gun Ho; Stein, Lincoln; Morris, Quaid (2015-02-13). "PhyloWGS: Reconstructing subclonal composition and evolution from whole-genome sequencing of tumors". Genome Biology. 16 (1): 35. doi:10.1186/s13059-015-0602-8. ISSN 1465-6906. PMC 4359439. PMID 25786235.

pubmed.ncbi.nlm.nih.gov

Shah, Sohrab P.; Bouchard-Côté, Alexandre; Aparicio, Samuel; Ha, Gavin; Justina Biele; Laks, Emma; Wan, Adrian; Yap, Damian; Khattra, Jaswinder (April 2014). "PyClone: statistical inference of clonal population structure in cancer". Nature Methods. 11 (4): 396–398. doi:10.1038/nmeth.2883. ISSN 1548-7105. PMC 4864026. PMID 24633410.
Blanchette, Mathieu; Pastinen, Tomi; Gunderson, Kevin L.; Pokholok, Dmitry; Ge, Bing; Wagner, James R. (2010-07-08). "Computational Analysis of Whole-Genome Differential Allelic Expression Data in Human". PLOS Computational Biology. 6 (7): e1000849. doi:10.1371/journal.pcbi.1000849. ISSN 1553-7358. PMC 2900287. PMID 20628616.
Aparicio, Samuel; Shah, Sohrab P.; Caldas, Carlos; Marra, Marco A.; Hansen, Carl; Eaves, Connie J.; Huntsman, David; Nguyen, Long; Lorette, Julie (February 2015). "Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution". Nature. 518 (7539): 422–426. doi:10.1038/nature13952. ISSN 1476-4687. PMC 4864027. PMID 25470049.
Caldas, Carlos; Rosenfeld, Nitzan; Wallis, Matthew; Shah, Sohrab P.; Bentley, David; Humphray, Sean; Kingsbury, Zoya; Shumansky, Karey; Farahani, Hossein (2015-11-04). "Multifocal clonal evolution characterized using circulating tumour DNA in a case of metastatic breast cancer". Nature Communications. 6: 8760. doi:10.1038/ncomms9760. ISSN 2041-1723. PMC 4659935. PMID 26530965.
Ding, Li; Wilson, Richard K.; Mardis, Elaine R.; Ley, Timothy J.; DiPersio, John F.; Schierding, William; Ellis, Matthew J.; Walter, Matthew J.; Graubert, Timothy A. (2014-08-07). "SciClone: Inferring Clonal Architecture and Tracking the Spatial and Temporal Patterns of Tumor Evolution". PLOS Computational Biology. 10 (8): e1003665. doi:10.1371/journal.pcbi.1003665. ISSN 1553-7358. PMC 4125065. PMID 25102416.
Noble, William Stafford; Blau, C. Anthony; Witten, Daniela; Song, ChaoZhong; Nickerson, Debbie; Smith, Josh; Weber, Kris; Hu, Alex; Wang, Junfeng (2014-07-10). "Inferring Clonal Composition from Multiple Sections of a Breast Cancer". PLOS Computational Biology. 10 (7): e1003703. doi:10.1371/journal.pcbi.1003703. ISSN 1553-7358. PMC 4091710. PMID 25010360.
Shimamura, Teppei; Miyano, Satoru; Mimori, Koshi; Uchi, Ryutaro; Niida, Atsushi; Matsui, Yusuke (2017-05-01). "phyC: Clustering cancer evolutionary trees". PLOS Computational Biology. 13 (5): e1005509. doi:10.1371/journal.pcbi.1005509. ISSN 1553-7358. PMC 5432190. PMID 28459850.
Deshwar, Amit G.; Vembu, Shankar; Yung, Christina K.; Jang, Gun Ho; Stein, Lincoln; Morris, Quaid (2015-02-13). "PhyloWGS: Reconstructing subclonal composition and evolution from whole-genome sequencing of tumors". Genome Biology. 16 (1): 35. doi:10.1186/s13059-015-0602-8. ISSN 1465-6906. PMC 4359439. PMID 25786235.

semanticscholar.org

api.semanticscholar.org

Hanson, K.M. (May 1993). "Bayesian reconstruction based on flexible prior models". J. Opt. Soc. Am. A. 10 (5): 997. doi:10.1364/JOSAA.10.000997. S2CID 17551149.
Markowetz, Florian; Rosenfeld, Nitzan; Yuan, Ke; Mouliere, Florent; Marass, Francesco (2016-04-06). "A phylogenetic latent feature model for clonal deconvolution". The Annals of Applied Statistics. 10 (4): 2377–2404. arXiv:1604.01715. doi:10.1214/16-AOAS986. S2CID 14986879.

worldcat.org

search.worldcat.org

Fearon, Eric R.; Wu, Rong; Greenson, Joel K.; Ulintz, Peter J.; Hardiman, Karin M. (2017-02-01). "Abstract PR07: Complex sub-clonal populations in colorectal cancer lymph node metastasis". Cancer Research. 77 (3 Supplement): PR07. doi:10.1158/1538-7445.CRC16-PR07. ISSN 0008-5472.
Shah, Sohrab P.; Bouchard-Côté, Alexandre; Aparicio, Samuel; Ha, Gavin; Justina Biele; Laks, Emma; Wan, Adrian; Yap, Damian; Khattra, Jaswinder (April 2014). "PyClone: statistical inference of clonal population structure in cancer". Nature Methods. 11 (4): 396–398. doi:10.1038/nmeth.2883. ISSN 1548-7105. PMC 4864026. PMID 24633410.
Blanchette, Mathieu; Pastinen, Tomi; Gunderson, Kevin L.; Pokholok, Dmitry; Ge, Bing; Wagner, James R. (2010-07-08). "Computational Analysis of Whole-Genome Differential Allelic Expression Data in Human". PLOS Computational Biology. 6 (7): e1000849. doi:10.1371/journal.pcbi.1000849. ISSN 1553-7358. PMC 2900287. PMID 20628616.
Aparicio, Samuel; Shah, Sohrab P.; Caldas, Carlos; Marra, Marco A.; Hansen, Carl; Eaves, Connie J.; Huntsman, David; Nguyen, Long; Lorette, Julie (February 2015). "Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution". Nature. 518 (7539): 422–426. doi:10.1038/nature13952. ISSN 1476-4687. PMC 4864027. PMID 25470049.
Caldas, Carlos; Rosenfeld, Nitzan; Wallis, Matthew; Shah, Sohrab P.; Bentley, David; Humphray, Sean; Kingsbury, Zoya; Shumansky, Karey; Farahani, Hossein (2015-11-04). "Multifocal clonal evolution characterized using circulating tumour DNA in a case of metastatic breast cancer". Nature Communications. 6: 8760. doi:10.1038/ncomms9760. ISSN 2041-1723. PMC 4659935. PMID 26530965.
Maciejewski, Jaroslaw P.; Ogawa, Seishi; Shih, Lee-Yung; Miyano, Satoru; Chiba, Shigeru; Saunthararajah, Yogen; Miyawaki, Shuichi; Nakamaki, Tsuyoshi; Dienes, Brittney (2015-12-03). "Serial Sequencing in Myelodysplastic Syndromes Reveals Dynamic Changes in Clonal Architecture and Allows for a New Prognostic Assessment of Mutations Detected in Cross-Sectional Testing". Blood. 126 (23): 709. doi:10.1182/blood.V126.23.709.709. ISSN 0006-4971.
Ding, Li; Wilson, Richard K.; Mardis, Elaine R.; Ley, Timothy J.; DiPersio, John F.; Schierding, William; Ellis, Matthew J.; Walter, Matthew J.; Graubert, Timothy A. (2014-08-07). "SciClone: Inferring Clonal Architecture and Tracking the Spatial and Temporal Patterns of Tumor Evolution". PLOS Computational Biology. 10 (8): e1003665. doi:10.1371/journal.pcbi.1003665. ISSN 1553-7358. PMC 4125065. PMID 25102416.
Noble, William Stafford; Blau, C. Anthony; Witten, Daniela; Song, ChaoZhong; Nickerson, Debbie; Smith, Josh; Weber, Kris; Hu, Alex; Wang, Junfeng (2014-07-10). "Inferring Clonal Composition from Multiple Sections of a Breast Cancer". PLOS Computational Biology. 10 (7): e1003703. doi:10.1371/journal.pcbi.1003703. ISSN 1553-7358. PMC 4091710. PMID 25010360.
Shimamura, Teppei; Miyano, Satoru; Mimori, Koshi; Uchi, Ryutaro; Niida, Atsushi; Matsui, Yusuke (2017-05-01). "phyC: Clustering cancer evolutionary trees". PLOS Computational Biology. 13 (5): e1005509. doi:10.1371/journal.pcbi.1005509. ISSN 1553-7358. PMC 5432190. PMID 28459850.
Deshwar, Amit G.; Vembu, Shankar; Yung, Christina K.; Jang, Gun Ho; Stein, Lincoln; Morris, Quaid (2015-02-13). "PhyloWGS: Reconstructing subclonal composition and evolution from whole-genome sequencing of tumors". Genome Biology. 16 (1): 35. doi:10.1186/s13059-015-0602-8. ISSN 1465-6906. PMC 4359439. PMID 25786235.