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Thind AS, Monga I, Thakur PK, Kumari P, Dindhoria K, Krzak M, et al. (November 2021). "Demystifying emerging bulk RNA-Seq applications: the application and utility of bioinformatic methodology". Briefings in Bioinformatics. 22 (6). doi:10.1093/bib/bbab259. PMID34329375.
Merino GA, Conesa A, Fernández EA (March 2019). "A benchmarking of workflows for detecting differential splicing and differential expression at isoform level in human RNA-seq studies". Briefings in Bioinformatics. 20 (2): 471–481. doi:10.1093/bib/bbx122. hdl:11336/41247. PMID29040385. S2CID22706028.
Thind AS, Monga I, Thakur PK, Kumari P, Dindhoria K, Krzak M, et al. (November 2021). "Demystifying emerging bulk RNA-Seq applications: the application and utility of bioinformatic methodology". Briefings in Bioinformatics. 22 (6). doi:10.1093/bib/bbab259. PMID34329375.
Garalde DR, Snell EA, Jachimowicz D, Sipos B, Lloyd JH, Bruce M, et al. (March 2018). "Highly parallel direct RNA sequencing on an array of nanopores". Nature Methods. 15 (3): 201–206. doi:10.1038/nmeth.4577. PMID29334379. S2CID3589823.
Tang F, Barbacioru C, Wang Y, Nordman E, Lee C, Xu N, et al. (May 2009). "mRNA-Seq whole-transcriptome analysis of a single cell". Nature Methods. 6 (5): 377–82. doi:10.1038/NMETH.1315. PMID19349980. S2CID16570747.
Dal Molin A, Di Camillo B (2019). "How to design a single-cell RNA-sequencing experiment: pitfalls, challenges and perspectives". Briefings in Bioinformatics. 20 (4): 1384–1394. doi:10.1093/bib/bby007. PMID29394315.
Peterson VM, Zhang KX, Kumar N, Wong J, Li L, Wilson DC, et al. (October 2017). "Multiplexed quantification of proteins and transcripts in single cells". Nature Biotechnology. 35 (10): 936–939. doi:10.1038/nbt.3973. PMID28854175. S2CID205285357.
Liao Y, Smyth GK, Shi W (April 2014). "featureCounts: an efficient general purpose program for assigning sequence reads to genomic features". Bioinformatics. 30 (7): 923–30. arXiv:1305.3347. doi:10.1093/bioinformatics/btt656. PMID24227677.
Wagner GP, Kin K, Lynch VJ (December 2012). "Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples". Theory in Biosciences. 131 (4): 281–5. doi:10.1007/s12064-012-0162-3. PMID22872506. S2CID16752581.
Merino GA, Conesa A, Fernández EA (March 2019). "A benchmarking of workflows for detecting differential splicing and differential expression at isoform level in human RNA-seq studies". Briefings in Bioinformatics. 20 (2): 471–481. doi:10.1093/bib/bbx122. hdl:11336/41247. PMID29040385. S2CID22706028.
Thind AS, Monga I, Thakur PK, Kumari P, Dindhoria K, Krzak M, et al. (November 2021). "Demystifying emerging bulk RNA-Seq applications: the application and utility of bioinformatic methodology". Briefings in Bioinformatics. 22 (6). doi:10.1093/bib/bbab259. PMID34329375.
Garalde DR, Snell EA, Jachimowicz D, Sipos B, Lloyd JH, Bruce M, et al. (March 2018). "Highly parallel direct RNA sequencing on an array of nanopores". Nature Methods. 15 (3): 201–206. doi:10.1038/nmeth.4577. PMID29334379. S2CID3589823.
Tang F, Barbacioru C, Wang Y, Nordman E, Lee C, Xu N, et al. (May 2009). "mRNA-Seq whole-transcriptome analysis of a single cell". Nature Methods. 6 (5): 377–82. doi:10.1038/NMETH.1315. PMID19349980. S2CID16570747.
Peterson VM, Zhang KX, Kumar N, Wong J, Li L, Wilson DC, et al. (October 2017). "Multiplexed quantification of proteins and transcripts in single cells". Nature Biotechnology. 35 (10): 936–939. doi:10.1038/nbt.3973. PMID28854175. S2CID205285357.
Wagner GP, Kin K, Lynch VJ (December 2012). "Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples". Theory in Biosciences. 131 (4): 281–5. doi:10.1007/s12064-012-0162-3. PMID22872506. S2CID16752581.
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Merino GA, Conesa A, Fernández EA (March 2019). "A benchmarking of workflows for detecting differential splicing and differential expression at isoform level in human RNA-seq studies". Briefings in Bioinformatics. 20 (2): 471–481. doi:10.1093/bib/bbx122. hdl:11336/41247. PMID29040385. S2CID22706028.