RNA virus (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "RNA virus" in English language version.

refsWebsite

Global rank English rank

42nih.gov

4^th place

28doi.org

2^nd place

5ictv.global

7,012^th place

4,406^th place

4harvard.edu

18^th place

17^th place

1archive.org

6^th place

1horizonpress.com

low place

1worldcat.org

5^th place

1semanticscholar.org

11^th place

8^th place

1psu.edu

207^th place

136^th place

1handle.net

102^nd place

76^th place

archive.org

Wagner, Edward K.; Hewlett, Martinez J. (1999). Basic virology. Malden, MA: Blackwell Science, Inc. p. 249. ISBN 0-632-04299-0. Retrieved 30 March 2020.

doi.org

International Committee on Taxonomy of Viruses Executive Committee (May 2020). "The new scope of virus taxonomy: partitioning the virosphere into 15 hierarchical ranks". Nature Microbiology. 5 (5): 668–674. doi:10.1038/s41564-020-0709-x. PMC 7186216. PMID 32341570.
Nguyen M, Haenni AL (June 2003). "Expression strategies of ambisense viruses". Virus Research. 93 (2): 141–50. doi:10.1016/S0168-1702(03)00094-7. PMID 12782362.
Kondo H, Chiba S, Toyoda K, Suzuki N (January 2013). "Evidence for negative-strand RNA virus infection in fungi". Virology. 435 (2): 201–09. doi:10.1016/j.virol.2012.10.002. PMID 23099204.
Sanjuán R, Nebot MR, Chirico N, Mansky LM, Belshaw R (October 2010). "Viral mutation rates". Journal of Virology. 84 (19): 9733–48. doi:10.1128/JVI.00694-10. PMC 2937809. PMID 20660197.
Steinhauer DA, Holland JJ (1987). "Rapid evolution of RNA viruses". Annual Review of Microbiology. 41: 409–33. doi:10.1146/annurev.mi.41.100187.002205. PMID 3318675.
Boutwell CL, Rolland MM, Herbeck JT, Mullins JI, Allen TM (October 2010). "Viral evolution and escape during acute HIV-1 infection". The Journal of Infectious Diseases. 202 (Suppl 2): S309–14. doi:10.1086/655653. PMC 2945609. PMID 20846038.
Bukh J, Purcell RH, Miller RH (August 1994). "Sequence analysis of the core gene of 14 hepatitis C virus genotypes". Proceedings of the National Academy of Sciences of the United States of America. 91 (17): 8239–43. Bibcode:1994PNAS...91.8239B. doi:10.1073/pnas.91.17.8239. PMC 44581. PMID 8058787.
Tuplin A, Evans DJ, Simmonds P (October 2004). "Detailed mapping of RNA secondary structures in core and NS5B-encoding region sequences of hepatitis C virus by RNase cleavage and novel bioinformatic prediction methods". The Journal of General Virology. 85 (Pt 10): 3037–47. doi:10.1099/vir.0.80141-0. PMID 15448367.
Silva JM, Pratas D, Caetano T, Matos D (August 2022). "The complexity landscape of viral genomes". GigaScience. 11: 1–16. doi:10.1093/gigascience/giac079. PMC 9366995. PMID 35950839.
Barr JN, Fearns R (June 2010). "How RNA viruses maintain their genome integrity". The Journal of General Virology. 91 (Pt 6): 1373–87. doi:10.1099/vir.0.020818-0. PMID 20335491.
Stedman, Kenneth M. (2015). "Deep Recombination: RNA and ssDNA Virus Genes in DNA Virus and Host Genomes". Annual Review of Virology. 2 (1): 203–217. doi:10.1146/annurev-virology-100114-055127. ISSN 2327-0578. PMID 26958913. S2CID 207745438.
Muslin C, Mac Kain A, Bessaud M, Blondel B, Delpeyroux F (September 2019). "Recombination in Enteroviruses, a Multi-Step Modular Evolutionary Process". Viruses. 11 (9): 859. doi:10.3390/v11090859. PMC 6784155. PMID 31540135.
Hu WS, Temin HM (November 1990). "Retroviral recombination and reverse transcription". Science. 250 (4985): 1227–33. Bibcode:1990Sci...250.1227H. doi:10.1126/science.1700865. PMID 1700865.
Rawson JM, Nikolaitchik OA, Keele BF, Pathak VK, Hu WS (November 2018). "Recombination is required for efficient HIV-1 replication and the maintenance of viral genome integrity". Nucleic Acids Research. 46 (20): 10535–45. doi:10.1093/nar/gky910. PMC 6237782. PMID 30307534.
Bernstein H, Bernstein C, Michod RE (January 2018). "Sex in microbial pathogens". Infection, Genetics and Evolution. 57: 8–25. Bibcode:2018InfGE..57....8B. doi:10.1016/j.meegid.2017.10.024. PMID 29111273.
Su S, Wong G, Shi W, Liu J, Lai AC, Zhou J, et al. (June 2016). "Epidemiology, Genetic Recombination, and Pathogenesis of Coronaviruses". Trends in Microbiology. 24 (6): 490–502. doi:10.1016/j.tim.2016.03.003. PMC 7125511. PMID 27012512.
Wolf YI, Kazlauskas D, Iranzo J, Lucía-Sanz A, Kuhn JH, Krupovic M, Dolja VV, Koonin EV (November 2018). "Origins and Evolution of the Global RNA Virome". mBio. 9 (6). doi:10.1128/mBio.02329-18. PMC 6282212. PMID 30482837.
Koonin EV (September 1991). "The phylogeny of RNA-dependent RNA polymerases of positive-strand RNA viruses". The Journal of General Virology. 72 (Pt 9): 2197–206. doi:10.1099/0022-1317-72-9-2197. PMID 1895057.
Rozanov MN, Koonin EV, Gorbalenya AE (August 1992). "Conservation of the putative methyltransferase domain: a hallmark of the 'Sindbis-like' supergroup of positive-strand RNA viruses". The Journal of General Virology. 73 (Pt 8): 2129–34. CiteSeerX 10.1.1.532.7367. doi:10.1099/0022-1317-73-8-2129. PMID 1645151.
Koonin EV, Dolja VV (1993). "Evolution and taxonomy of positive-strand RNA viruses: implications of comparative analysis of amino acid sequences". Critical Reviews in Biochemistry and Molecular Biology. 28 (5): 375–430. doi:10.3109/10409239309078440. PMID 8269709.
Ward CW (1993). "Progress towards a higher taxonomy of viruses". Research in Virology. 144 (6): 419–53. doi:10.1016/S0923-2516(06)80059-2. PMC 7135741. PMID 8140287.
Koonin EV, Wolf YI, Nagasaki K, Dolja VV (December 2008). "The Big Bang of picorna-like virus evolution antedates the radiation of eukaryotic supergroups". Nature Reviews. Microbiology. 6 (12): 925–39. doi:10.1038/nrmicro2030. PMID 18997823.
Ghabrial SA (1998). "Origin, adaptation and evolutionary pathways of fungal viruses". Virus Genes. 16 (1): 119–31. doi:10.1023/a:1007966229595. PMC 7089520. PMID 9562896.
Gibrat JF, Mariadassou M, Boudinot P, Delmas B (July 2013). "Analyses of the radiation of birnaviruses from diverse host phyla and of their evolutionary affinities with other double-stranded RNA and positive strand RNA viruses using robust structure-based multiple sequence alignments and advanced phylogenetic methods". BMC Evolutionary Biology. 13 (1): 154. Bibcode:2013BMCEE..13..154G. doi:10.1186/1471-2148-13-154. PMC 3724706. PMID 23865988.
Li CX, Shi M, Tian JH, Lin XD, Kang YJ, Chen LJ, et al. (January 2015). "Unprecedented genomic diversity of RNA viruses in arthropods reveals the ancestry of negative-sense RNA viruses". eLife. 4. doi:10.7554/eLife.05378. PMC 4384744. PMID 25633976.
Krupovic M, Kuhn JH, Fischer MG (January 2016). "A classification system for virophages and satellite viruses". Archives of Virology. 161 (1): 233–47. doi:10.1007/s00705-015-2622-9. hdl:11858/00-001M-0000-0028-DC34-F. PMID 26446887.
Adams MJ, Antoniw JF, Kreuze J (2009). "Virgaviridae: a new family of rod-shaped plant viruses". Archives of Virology. 154 (12): 1967–72. doi:10.1007/s00705-009-0506-6. PMID 19862474.
Mihindukulasuriya KA, Nguyen NL, Wu G, Huang HV, da Rosa AP, Popov VL, et al. (May 2009). "Nyamanini and midway viruses define a novel taxon of RNA viruses in the order Mononegavirales". Journal of Virology. 83 (10): 5109–16. doi:10.1128/JVI.02667-08. PMC 2682064. PMID 19279111.

handle.net

hdl.handle.net

Krupovic M, Kuhn JH, Fischer MG (January 2016). "A classification system for virophages and satellite viruses". Archives of Virology. 161 (1): 233–47. doi:10.1007/s00705-015-2622-9. hdl:11858/00-001M-0000-0028-DC34-F. PMID 26446887.

harvard.edu

ui.adsabs.harvard.edu

Bukh J, Purcell RH, Miller RH (August 1994). "Sequence analysis of the core gene of 14 hepatitis C virus genotypes". Proceedings of the National Academy of Sciences of the United States of America. 91 (17): 8239–43. Bibcode:1994PNAS...91.8239B. doi:10.1073/pnas.91.17.8239. PMC 44581. PMID 8058787.
Hu WS, Temin HM (November 1990). "Retroviral recombination and reverse transcription". Science. 250 (4985): 1227–33. Bibcode:1990Sci...250.1227H. doi:10.1126/science.1700865. PMID 1700865.
Bernstein H, Bernstein C, Michod RE (January 2018). "Sex in microbial pathogens". Infection, Genetics and Evolution. 57: 8–25. Bibcode:2018InfGE..57....8B. doi:10.1016/j.meegid.2017.10.024. PMID 29111273.
Gibrat JF, Mariadassou M, Boudinot P, Delmas B (July 2013). "Analyses of the radiation of birnaviruses from diverse host phyla and of their evolutionary affinities with other double-stranded RNA and positive strand RNA viruses using robust structure-based multiple sequence alignments and advanced phylogenetic methods". BMC Evolutionary Biology. 13 (1): 154. Bibcode:2013BMCEE..13..154G. doi:10.1186/1471-2148-13-154. PMC 3724706. PMID 23865988.

horizonpress.com

Patton JT, ed. (2008). Segmented Double-stranded RNA Viruses: Structure and Molecular Biology. Caister Academic Press. ISBN 978-1-904455-21-9.

ictv.global

This inclusion was due to TaxoProp 2017.006G, which proposed Riboviria. The confusion might be due to the TaxoProp's reference to a "monophyly of all RNA viruses", improperly termed as it was only demonstrated with RdRP. On the other hand, the proposed definition of Riboviria did correctly mention RdRP .
TaxoProp 2019.006G
TaxoProp 2019.009G
"Current ICTV Taxonomy Release | ICTV". ictv.global. Retrieved 3 April 2023.
"Virus Taxonomy: 2018 Release". International Committee on Taxonomy of Viruses. Retrieved 13 November 2018.

nih.gov

pubmed.ncbi.nlm.nih.gov

International Committee on Taxonomy of Viruses Executive Committee (May 2020). "The new scope of virus taxonomy: partitioning the virosphere into 15 hierarchical ranks". Nature Microbiology. 5 (5): 668–674. doi:10.1038/s41564-020-0709-x. PMC 7186216. PMID 32341570.
Nguyen M, Haenni AL (June 2003). "Expression strategies of ambisense viruses". Virus Research. 93 (2): 141–50. doi:10.1016/S0168-1702(03)00094-7. PMID 12782362.
Kondo H, Chiba S, Toyoda K, Suzuki N (January 2013). "Evidence for negative-strand RNA virus infection in fungi". Virology. 435 (2): 201–09. doi:10.1016/j.virol.2012.10.002. PMID 23099204.
Sanjuán R, Nebot MR, Chirico N, Mansky LM, Belshaw R (October 2010). "Viral mutation rates". Journal of Virology. 84 (19): 9733–48. doi:10.1128/JVI.00694-10. PMC 2937809. PMID 20660197.
Steinhauer DA, Holland JJ (1987). "Rapid evolution of RNA viruses". Annual Review of Microbiology. 41: 409–33. doi:10.1146/annurev.mi.41.100187.002205. PMID 3318675.
Boutwell CL, Rolland MM, Herbeck JT, Mullins JI, Allen TM (October 2010). "Viral evolution and escape during acute HIV-1 infection". The Journal of Infectious Diseases. 202 (Suppl 2): S309–14. doi:10.1086/655653. PMC 2945609. PMID 20846038.
Bukh J, Purcell RH, Miller RH (August 1994). "Sequence analysis of the core gene of 14 hepatitis C virus genotypes". Proceedings of the National Academy of Sciences of the United States of America. 91 (17): 8239–43. Bibcode:1994PNAS...91.8239B. doi:10.1073/pnas.91.17.8239. PMC 44581. PMID 8058787.
Tuplin A, Evans DJ, Simmonds P (October 2004). "Detailed mapping of RNA secondary structures in core and NS5B-encoding region sequences of hepatitis C virus by RNase cleavage and novel bioinformatic prediction methods". The Journal of General Virology. 85 (Pt 10): 3037–47. doi:10.1099/vir.0.80141-0. PMID 15448367.
Silva JM, Pratas D, Caetano T, Matos D (August 2022). "The complexity landscape of viral genomes". GigaScience. 11: 1–16. doi:10.1093/gigascience/giac079. PMC 9366995. PMID 35950839.
Barr JN, Fearns R (June 2010). "How RNA viruses maintain their genome integrity". The Journal of General Virology. 91 (Pt 6): 1373–87. doi:10.1099/vir.0.020818-0. PMID 20335491.
Stedman, Kenneth M. (2015). "Deep Recombination: RNA and ssDNA Virus Genes in DNA Virus and Host Genomes". Annual Review of Virology. 2 (1): 203–217. doi:10.1146/annurev-virology-100114-055127. ISSN 2327-0578. PMID 26958913. S2CID 207745438.
Muslin C, Mac Kain A, Bessaud M, Blondel B, Delpeyroux F (September 2019). "Recombination in Enteroviruses, a Multi-Step Modular Evolutionary Process". Viruses. 11 (9): 859. doi:10.3390/v11090859. PMC 6784155. PMID 31540135.
Hu WS, Temin HM (November 1990). "Retroviral recombination and reverse transcription". Science. 250 (4985): 1227–33. Bibcode:1990Sci...250.1227H. doi:10.1126/science.1700865. PMID 1700865.
Rawson JM, Nikolaitchik OA, Keele BF, Pathak VK, Hu WS (November 2018). "Recombination is required for efficient HIV-1 replication and the maintenance of viral genome integrity". Nucleic Acids Research. 46 (20): 10535–45. doi:10.1093/nar/gky910. PMC 6237782. PMID 30307534.
Bernstein H, Bernstein C, Michod RE (January 2018). "Sex in microbial pathogens". Infection, Genetics and Evolution. 57: 8–25. Bibcode:2018InfGE..57....8B. doi:10.1016/j.meegid.2017.10.024. PMID 29111273.
Su S, Wong G, Shi W, Liu J, Lai AC, Zhou J, et al. (June 2016). "Epidemiology, Genetic Recombination, and Pathogenesis of Coronaviruses". Trends in Microbiology. 24 (6): 490–502. doi:10.1016/j.tim.2016.03.003. PMC 7125511. PMID 27012512.
Wolf YI, Kazlauskas D, Iranzo J, Lucía-Sanz A, Kuhn JH, Krupovic M, Dolja VV, Koonin EV (November 2018). "Origins and Evolution of the Global RNA Virome". mBio. 9 (6). doi:10.1128/mBio.02329-18. PMC 6282212. PMID 30482837.
Koonin EV (September 1991). "The phylogeny of RNA-dependent RNA polymerases of positive-strand RNA viruses". The Journal of General Virology. 72 (Pt 9): 2197–206. doi:10.1099/0022-1317-72-9-2197. PMID 1895057.
Rozanov MN, Koonin EV, Gorbalenya AE (August 1992). "Conservation of the putative methyltransferase domain: a hallmark of the 'Sindbis-like' supergroup of positive-strand RNA viruses". The Journal of General Virology. 73 (Pt 8): 2129–34. CiteSeerX 10.1.1.532.7367. doi:10.1099/0022-1317-73-8-2129. PMID 1645151.
Koonin EV, Dolja VV (1993). "Evolution and taxonomy of positive-strand RNA viruses: implications of comparative analysis of amino acid sequences". Critical Reviews in Biochemistry and Molecular Biology. 28 (5): 375–430. doi:10.3109/10409239309078440. PMID 8269709.
Ward CW (1993). "Progress towards a higher taxonomy of viruses". Research in Virology. 144 (6): 419–53. doi:10.1016/S0923-2516(06)80059-2. PMC 7135741. PMID 8140287.
Koonin EV, Wolf YI, Nagasaki K, Dolja VV (December 2008). "The Big Bang of picorna-like virus evolution antedates the radiation of eukaryotic supergroups". Nature Reviews. Microbiology. 6 (12): 925–39. doi:10.1038/nrmicro2030. PMID 18997823.
Ghabrial SA (1998). "Origin, adaptation and evolutionary pathways of fungal viruses". Virus Genes. 16 (1): 119–31. doi:10.1023/a:1007966229595. PMC 7089520. PMID 9562896.
Gibrat JF, Mariadassou M, Boudinot P, Delmas B (July 2013). "Analyses of the radiation of birnaviruses from diverse host phyla and of their evolutionary affinities with other double-stranded RNA and positive strand RNA viruses using robust structure-based multiple sequence alignments and advanced phylogenetic methods". BMC Evolutionary Biology. 13 (1): 154. Bibcode:2013BMCEE..13..154G. doi:10.1186/1471-2148-13-154. PMC 3724706. PMID 23865988.
Li CX, Shi M, Tian JH, Lin XD, Kang YJ, Chen LJ, et al. (January 2015). "Unprecedented genomic diversity of RNA viruses in arthropods reveals the ancestry of negative-sense RNA viruses". eLife. 4. doi:10.7554/eLife.05378. PMC 4384744. PMID 25633976.
Krupovic M, Kuhn JH, Fischer MG (January 2016). "A classification system for virophages and satellite viruses". Archives of Virology. 161 (1): 233–47. doi:10.1007/s00705-015-2622-9. hdl:11858/00-001M-0000-0028-DC34-F. PMID 26446887.
Adams MJ, Antoniw JF, Kreuze J (2009). "Virgaviridae: a new family of rod-shaped plant viruses". Archives of Virology. 154 (12): 1967–72. doi:10.1007/s00705-009-0506-6. PMID 19862474.
Mihindukulasuriya KA, Nguyen NL, Wu G, Huang HV, da Rosa AP, Popov VL, et al. (May 2009). "Nyamanini and midway viruses define a novel taxon of RNA viruses in the order Mononegavirales". Journal of Virology. 83 (10): 5109–16. doi:10.1128/JVI.02667-08. PMC 2682064. PMID 19279111.

ncbi.nlm.nih.gov

International Committee on Taxonomy of Viruses Executive Committee (May 2020). "The new scope of virus taxonomy: partitioning the virosphere into 15 hierarchical ranks". Nature Microbiology. 5 (5): 668–674. doi:10.1038/s41564-020-0709-x. PMC 7186216. PMID 32341570.
Sanjuán R, Nebot MR, Chirico N, Mansky LM, Belshaw R (October 2010). "Viral mutation rates". Journal of Virology. 84 (19): 9733–48. doi:10.1128/JVI.00694-10. PMC 2937809. PMID 20660197.
Boutwell CL, Rolland MM, Herbeck JT, Mullins JI, Allen TM (October 2010). "Viral evolution and escape during acute HIV-1 infection". The Journal of Infectious Diseases. 202 (Suppl 2): S309–14. doi:10.1086/655653. PMC 2945609. PMID 20846038.
Bukh J, Purcell RH, Miller RH (August 1994). "Sequence analysis of the core gene of 14 hepatitis C virus genotypes". Proceedings of the National Academy of Sciences of the United States of America. 91 (17): 8239–43. Bibcode:1994PNAS...91.8239B. doi:10.1073/pnas.91.17.8239. PMC 44581. PMID 8058787.
Silva JM, Pratas D, Caetano T, Matos D (August 2022). "The complexity landscape of viral genomes". GigaScience. 11: 1–16. doi:10.1093/gigascience/giac079. PMC 9366995. PMID 35950839.
Muslin C, Mac Kain A, Bessaud M, Blondel B, Delpeyroux F (September 2019). "Recombination in Enteroviruses, a Multi-Step Modular Evolutionary Process". Viruses. 11 (9): 859. doi:10.3390/v11090859. PMC 6784155. PMID 31540135.
Rawson JM, Nikolaitchik OA, Keele BF, Pathak VK, Hu WS (November 2018). "Recombination is required for efficient HIV-1 replication and the maintenance of viral genome integrity". Nucleic Acids Research. 46 (20): 10535–45. doi:10.1093/nar/gky910. PMC 6237782. PMID 30307534.
Su S, Wong G, Shi W, Liu J, Lai AC, Zhou J, et al. (June 2016). "Epidemiology, Genetic Recombination, and Pathogenesis of Coronaviruses". Trends in Microbiology. 24 (6): 490–502. doi:10.1016/j.tim.2016.03.003. PMC 7125511. PMID 27012512.
Wolf YI, Kazlauskas D, Iranzo J, Lucía-Sanz A, Kuhn JH, Krupovic M, Dolja VV, Koonin EV (November 2018). "Origins and Evolution of the Global RNA Virome". mBio. 9 (6). doi:10.1128/mBio.02329-18. PMC 6282212. PMID 30482837.
Ward CW (1993). "Progress towards a higher taxonomy of viruses". Research in Virology. 144 (6): 419–53. doi:10.1016/S0923-2516(06)80059-2. PMC 7135741. PMID 8140287.
Ghabrial SA (1998). "Origin, adaptation and evolutionary pathways of fungal viruses". Virus Genes. 16 (1): 119–31. doi:10.1023/a:1007966229595. PMC 7089520. PMID 9562896.
Gibrat JF, Mariadassou M, Boudinot P, Delmas B (July 2013). "Analyses of the radiation of birnaviruses from diverse host phyla and of their evolutionary affinities with other double-stranded RNA and positive strand RNA viruses using robust structure-based multiple sequence alignments and advanced phylogenetic methods". BMC Evolutionary Biology. 13 (1): 154. Bibcode:2013BMCEE..13..154G. doi:10.1186/1471-2148-13-154. PMC 3724706. PMID 23865988.
Li CX, Shi M, Tian JH, Lin XD, Kang YJ, Chen LJ, et al. (January 2015). "Unprecedented genomic diversity of RNA viruses in arthropods reveals the ancestry of negative-sense RNA viruses". eLife. 4. doi:10.7554/eLife.05378. PMC 4384744. PMID 25633976.
Mihindukulasuriya KA, Nguyen NL, Wu G, Huang HV, da Rosa AP, Popov VL, et al. (May 2009). "Nyamanini and midway viruses define a novel taxon of RNA viruses in the order Mononegavirales". Journal of Virology. 83 (10): 5109–16. doi:10.1128/JVI.02667-08. PMC 2682064. PMID 19279111.

psu.edu

citeseerx.ist.psu.edu

Rozanov MN, Koonin EV, Gorbalenya AE (August 1992). "Conservation of the putative methyltransferase domain: a hallmark of the 'Sindbis-like' supergroup of positive-strand RNA viruses". The Journal of General Virology. 73 (Pt 8): 2129–34. CiteSeerX 10.1.1.532.7367. doi:10.1099/0022-1317-73-8-2129. PMID 1645151.

semanticscholar.org

api.semanticscholar.org

Stedman, Kenneth M. (2015). "Deep Recombination: RNA and ssDNA Virus Genes in DNA Virus and Host Genomes". Annual Review of Virology. 2 (1): 203–217. doi:10.1146/annurev-virology-100114-055127. ISSN 2327-0578. PMID 26958913. S2CID 207745438.

worldcat.org

search.worldcat.org

Stedman, Kenneth M. (2015). "Deep Recombination: RNA and ssDNA Virus Genes in DNA Virus and Host Genomes". Annual Review of Virology. 2 (1): 203–217. doi:10.1146/annurev-virology-100114-055127. ISSN 2327-0578. PMID 26958913. S2CID 207745438.