Ramachandran plot (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Ramachandran plot" in English language version.

refsWebsite

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22nih.gov

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17doi.org

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4harvard.edu

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4semanticscholar.org

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1iucr.org

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9,593^rd place

1sandwalk.blogspot.in

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1web.archive.org

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1icbff2013.com

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doi.org

Ramachandran, G.N.; Ramakrishnan, C.; Sasisekharan, V. (1963). "Stereochemistry of polypeptide chain configurations". Journal of Molecular Biology. 7: 95–9. doi:10.1016/S0022-2836(63)80023-6. PMID 13990617.
Richardson, J.S. (1981). "The Anatomy and Taxonomy of Protein Structure". Anatomy and Taxonomy of Protein Structures. Advances in Protein Chemistry. Vol. 34. pp. 167–339. doi:10.1016/S0065-3233(08)60520-3. ISBN 9780120342341. PMID 7020376.
Pauling, L.; Corey, H.R.; Branson, H. R. (1951). "The Structure of Proteins: Two Hydrogen-Bonded Helical Configurations of the Polypeptide Chain". Proceedings of the National Academy of Sciences of the United States of America. 37 (4): 205–211. Bibcode:1951PNAS...37..205P. doi:10.1073/pnas.37.4.205. PMC 1063337. PMID 14816373.
Ramachandran, G.N.; Sasiskharan, V. (1968). Conformation of polypeptides and proteins. Advances in Protein Chemistry. Vol. 23. pp. 283–437. doi:10.1016/S0065-3233(08)60402-7. ISBN 9780120342235. PMID 4882249.
Chakrabarti, Pinak; Pal, Debnath (2001). "The interrelationships of side-chain and main-chain conformations in proteins". Progress in Biophysics and Molecular Biology. 76 (1–2): 1–102. doi:10.1016/S0079-6107(01)00005-0. PMID 11389934.
Kendrew, J.C.; Dickerson, R.E.; Strandberg, B.E.; Hart, R.G.; Davies, D.R.; Phillips, D.C.; Shore, V.C. (1960). "Structure of myoglobin: a three-dimensional Fourier synthesis at 2Å resolution". Nature. 185 (4711): 422–427. Bibcode:1960Natur.185..422K. doi:10.1038/185422a0. PMID 18990802. S2CID 4167651.
Morris, A.L.; MacArthur, M.W.; Hutchinson, E G.; Thornton, J.M. (1992). "Stereochemical quality of protein structure coordinates". Proteins: Structure, Function, and Genetics. 12 (4): 345–64. doi:10.1002/prot.340120407. PMID 1579569. S2CID 940786.
Kleywegt, G.J.; Jones, T.A. (1996). "Phi/psi-chology: Ramachandran revisited". Structure. 4 (12): 1395–400. doi:10.1016/S0969-2126(96)00147-5. PMID 8994966.
Hooft, R.W.W.; Sander, C.; Vriend, G. (1997). "Objectively judging the quality of a protein structure from a Ramachandran plot". Comput Appl Biosci. 13 (4): 425–430. doi:10.1093/bioinformatics/13.4.425. PMID 9283757.
Hovmöller, S.; Zhou, T.; Ohlson, T. (2002). "Conformations of amino acids in proteins". Acta Crystallographica D. 58 (Pt 5): 768–76. doi:10.1107/S0907444902003359. PMID 11976487.
Lovell, S.C.; Davis, I.W.; Arendall, W.B.; De Bakker, P.I.W.; Word, J.M.; Prisant, M.G.; Richardson, J.S.; Richardson, D.C. (2003). "Structure validation by Cα geometry: ϕ,ψ and Cβ deviation". Proteins: Structure, Function, and Genetics. 50 (3): 437–50. doi:10.1002/prot.10286. PMID 12557186. S2CID 8358424.
Anderson RJ, Weng Z, Campbell RK, Jiang X (2005). "Main-chain conformational tendencies of amino acids". Proteins. 60 (4): 679–89. doi:10.1002/prot.20530. PMID 16021632. S2CID 17410997.
Ting, D.; Wang, G.; Mitra, R.; Jordan, M.I.; Dunbrack, R.L. (2010). "Neighbor-dependent Ramachandran probability distributions of amino acids developed from a hierarchical Dirichlet process model". PLOS Computational Biology. 6 (4): e1000763. Bibcode:2010PLSCB...6E0763T. doi:10.1371/journal.pcbi.1000763. PMC 2861699. PMID 20442867.
Wintjens, René T.; Rooman, Marianne J.; Wodak, Shoshana J. (January 1996). "Automatic Classification and Analysis of αα-Turn Motifs in Proteins". Journal of Molecular Biology. 255 (1): 235–253. doi:10.1006/jmbi.1996.0020. PMID 8568871.
Lin, Yu-Ru; Koga, Nobuyasu; Tatsumi-Koga, Rie; Liu, Gaohua; Clouser, Amanda F.; Montelione, Gaetano T.; Baker, David (6 October 2015). "Control over overall shape and size in de novo designed proteins". Proceedings of the National Academy of Sciences. 112 (40): E5478–E5485. Bibcode:2015PNAS..112E5478L. doi:10.1073/pnas.1509508112. PMC 4603489. PMID 26396255.
Mannige, Ranjan (16 May 2017). "An exhaustive survey of regular peptide conformations using a new metric for backbone handedness (h)". PeerJ. 5: e3327. doi:10.7717/peerj.3327. PMC 5436576. PMID 28533975.
Lütteke, T.; Frank, M.; von der Lieth, C.W. (2005). "Carbohydrate Structure Suite (CSS): analysis of carbohydrate 3D structures derived from the PDB". Nucleic Acids Res. 33 (Database issue): D242–246. doi:10.1093/nar/gki013. PMC 539967. PMID 15608187.

harvard.edu

ui.adsabs.harvard.edu

Pauling, L.; Corey, H.R.; Branson, H. R. (1951). "The Structure of Proteins: Two Hydrogen-Bonded Helical Configurations of the Polypeptide Chain". Proceedings of the National Academy of Sciences of the United States of America. 37 (4): 205–211. Bibcode:1951PNAS...37..205P. doi:10.1073/pnas.37.4.205. PMC 1063337. PMID 14816373.
Kendrew, J.C.; Dickerson, R.E.; Strandberg, B.E.; Hart, R.G.; Davies, D.R.; Phillips, D.C.; Shore, V.C. (1960). "Structure of myoglobin: a three-dimensional Fourier synthesis at 2Å resolution". Nature. 185 (4711): 422–427. Bibcode:1960Natur.185..422K. doi:10.1038/185422a0. PMID 18990802. S2CID 4167651.
Ting, D.; Wang, G.; Mitra, R.; Jordan, M.I.; Dunbrack, R.L. (2010). "Neighbor-dependent Ramachandran probability distributions of amino acids developed from a hierarchical Dirichlet process model". PLOS Computational Biology. 6 (4): e1000763. Bibcode:2010PLSCB...6E0763T. doi:10.1371/journal.pcbi.1000763. PMC 2861699. PMID 20442867.
Lin, Yu-Ru; Koga, Nobuyasu; Tatsumi-Koga, Rie; Liu, Gaohua; Clouser, Amanda F.; Montelione, Gaetano T.; Baker, David (6 October 2015). "Control over overall shape and size in de novo designed proteins". Proceedings of the National Academy of Sciences. 112 (40): E5478–E5485. Bibcode:2015PNAS..112E5478L. doi:10.1073/pnas.1509508112. PMC 4603489. PMID 26396255.

icbff2013.com

"ICBFF-2013". MBU, IISc, Bangalore. Archived from the original on 15 January 2013. Retrieved 28 January 2013.

iucr.org

scripts.iucr.org

Hovmöller, S.; Zhou, T.; Ohlson, T. (2002). "Conformations of amino acids in proteins". Acta Crystallographica D. 58 (Pt 5): 768–76. doi:10.1107/S0907444902003359. PMID 11976487.

nih.gov

pubmed.ncbi.nlm.nih.gov

Ramachandran, G.N.; Ramakrishnan, C.; Sasisekharan, V. (1963). "Stereochemistry of polypeptide chain configurations". Journal of Molecular Biology. 7: 95–9. doi:10.1016/S0022-2836(63)80023-6. PMID 13990617.
Richardson, J.S. (1981). "The Anatomy and Taxonomy of Protein Structure". Anatomy and Taxonomy of Protein Structures. Advances in Protein Chemistry. Vol. 34. pp. 167–339. doi:10.1016/S0065-3233(08)60520-3. ISBN 9780120342341. PMID 7020376.
Pauling, L.; Corey, H.R.; Branson, H. R. (1951). "The Structure of Proteins: Two Hydrogen-Bonded Helical Configurations of the Polypeptide Chain". Proceedings of the National Academy of Sciences of the United States of America. 37 (4): 205–211. Bibcode:1951PNAS...37..205P. doi:10.1073/pnas.37.4.205. PMC 1063337. PMID 14816373.
Ramachandran, G.N.; Sasiskharan, V. (1968). Conformation of polypeptides and proteins. Advances in Protein Chemistry. Vol. 23. pp. 283–437. doi:10.1016/S0065-3233(08)60402-7. ISBN 9780120342235. PMID 4882249.
Chakrabarti, Pinak; Pal, Debnath (2001). "The interrelationships of side-chain and main-chain conformations in proteins". Progress in Biophysics and Molecular Biology. 76 (1–2): 1–102. doi:10.1016/S0079-6107(01)00005-0. PMID 11389934.
Kendrew, J.C.; Dickerson, R.E.; Strandberg, B.E.; Hart, R.G.; Davies, D.R.; Phillips, D.C.; Shore, V.C. (1960). "Structure of myoglobin: a three-dimensional Fourier synthesis at 2Å resolution". Nature. 185 (4711): 422–427. Bibcode:1960Natur.185..422K. doi:10.1038/185422a0. PMID 18990802. S2CID 4167651.
Morris, A.L.; MacArthur, M.W.; Hutchinson, E G.; Thornton, J.M. (1992). "Stereochemical quality of protein structure coordinates". Proteins: Structure, Function, and Genetics. 12 (4): 345–64. doi:10.1002/prot.340120407. PMID 1579569. S2CID 940786.
Kleywegt, G.J.; Jones, T.A. (1996). "Phi/psi-chology: Ramachandran revisited". Structure. 4 (12): 1395–400. doi:10.1016/S0969-2126(96)00147-5. PMID 8994966.
Hooft, R.W.W.; Sander, C.; Vriend, G. (1997). "Objectively judging the quality of a protein structure from a Ramachandran plot". Comput Appl Biosci. 13 (4): 425–430. doi:10.1093/bioinformatics/13.4.425. PMID 9283757.
Hovmöller, S.; Zhou, T.; Ohlson, T. (2002). "Conformations of amino acids in proteins". Acta Crystallographica D. 58 (Pt 5): 768–76. doi:10.1107/S0907444902003359. PMID 11976487.
Lovell, S.C.; Davis, I.W.; Arendall, W.B.; De Bakker, P.I.W.; Word, J.M.; Prisant, M.G.; Richardson, J.S.; Richardson, D.C. (2003). "Structure validation by Cα geometry: ϕ,ψ and Cβ deviation". Proteins: Structure, Function, and Genetics. 50 (3): 437–50. doi:10.1002/prot.10286. PMID 12557186. S2CID 8358424.
Anderson RJ, Weng Z, Campbell RK, Jiang X (2005). "Main-chain conformational tendencies of amino acids". Proteins. 60 (4): 679–89. doi:10.1002/prot.20530. PMID 16021632. S2CID 17410997.
Ting, D.; Wang, G.; Mitra, R.; Jordan, M.I.; Dunbrack, R.L. (2010). "Neighbor-dependent Ramachandran probability distributions of amino acids developed from a hierarchical Dirichlet process model". PLOS Computational Biology. 6 (4): e1000763. Bibcode:2010PLSCB...6E0763T. doi:10.1371/journal.pcbi.1000763. PMC 2861699. PMID 20442867.
Wintjens, René T.; Rooman, Marianne J.; Wodak, Shoshana J. (January 1996). "Automatic Classification and Analysis of αα-Turn Motifs in Proteins". Journal of Molecular Biology. 255 (1): 235–253. doi:10.1006/jmbi.1996.0020. PMID 8568871.
Lin, Yu-Ru; Koga, Nobuyasu; Tatsumi-Koga, Rie; Liu, Gaohua; Clouser, Amanda F.; Montelione, Gaetano T.; Baker, David (6 October 2015). "Control over overall shape and size in de novo designed proteins". Proceedings of the National Academy of Sciences. 112 (40): E5478–E5485. Bibcode:2015PNAS..112E5478L. doi:10.1073/pnas.1509508112. PMC 4603489. PMID 26396255.
Mannige, Ranjan (16 May 2017). "An exhaustive survey of regular peptide conformations using a new metric for backbone handedness (h)". PeerJ. 5: e3327. doi:10.7717/peerj.3327. PMC 5436576. PMID 28533975.
Lütteke, T.; Frank, M.; von der Lieth, C.W. (2005). "Carbohydrate Structure Suite (CSS): analysis of carbohydrate 3D structures derived from the PDB". Nucleic Acids Res. 33 (Database issue): D242–246. doi:10.1093/nar/gki013. PMC 539967. PMID 15608187.

ncbi.nlm.nih.gov

Pauling, L.; Corey, H.R.; Branson, H. R. (1951). "The Structure of Proteins: Two Hydrogen-Bonded Helical Configurations of the Polypeptide Chain". Proceedings of the National Academy of Sciences of the United States of America. 37 (4): 205–211. Bibcode:1951PNAS...37..205P. doi:10.1073/pnas.37.4.205. PMC 1063337. PMID 14816373.
Ting, D.; Wang, G.; Mitra, R.; Jordan, M.I.; Dunbrack, R.L. (2010). "Neighbor-dependent Ramachandran probability distributions of amino acids developed from a hierarchical Dirichlet process model". PLOS Computational Biology. 6 (4): e1000763. Bibcode:2010PLSCB...6E0763T. doi:10.1371/journal.pcbi.1000763. PMC 2861699. PMID 20442867.
Lin, Yu-Ru; Koga, Nobuyasu; Tatsumi-Koga, Rie; Liu, Gaohua; Clouser, Amanda F.; Montelione, Gaetano T.; Baker, David (6 October 2015). "Control over overall shape and size in de novo designed proteins". Proceedings of the National Academy of Sciences. 112 (40): E5478–E5485. Bibcode:2015PNAS..112E5478L. doi:10.1073/pnas.1509508112. PMC 4603489. PMID 26396255.
Mannige, Ranjan (16 May 2017). "An exhaustive survey of regular peptide conformations using a new metric for backbone handedness (h)". PeerJ. 5: e3327. doi:10.7717/peerj.3327. PMC 5436576. PMID 28533975.
Lütteke, T.; Frank, M.; von der Lieth, C.W. (2005). "Carbohydrate Structure Suite (CSS): analysis of carbohydrate 3D structures derived from the PDB". Nucleic Acids Res. 33 (Database issue): D242–246. doi:10.1093/nar/gki013. PMC 539967. PMID 15608187.

sandwalk.blogspot.in

"50th Anniversary of Ramachandran Plots". Professor Laurence A. Moran. Retrieved 17 January 2013.

semanticscholar.org

api.semanticscholar.org

Kendrew, J.C.; Dickerson, R.E.; Strandberg, B.E.; Hart, R.G.; Davies, D.R.; Phillips, D.C.; Shore, V.C. (1960). "Structure of myoglobin: a three-dimensional Fourier synthesis at 2Å resolution". Nature. 185 (4711): 422–427. Bibcode:1960Natur.185..422K. doi:10.1038/185422a0. PMID 18990802. S2CID 4167651.
Morris, A.L.; MacArthur, M.W.; Hutchinson, E G.; Thornton, J.M. (1992). "Stereochemical quality of protein structure coordinates". Proteins: Structure, Function, and Genetics. 12 (4): 345–64. doi:10.1002/prot.340120407. PMID 1579569. S2CID 940786.
Lovell, S.C.; Davis, I.W.; Arendall, W.B.; De Bakker, P.I.W.; Word, J.M.; Prisant, M.G.; Richardson, J.S.; Richardson, D.C. (2003). "Structure validation by Cα geometry: ϕ,ψ and Cβ deviation". Proteins: Structure, Function, and Genetics. 50 (3): 437–50. doi:10.1002/prot.10286. PMID 12557186. S2CID 8358424.
Anderson RJ, Weng Z, Campbell RK, Jiang X (2005). "Main-chain conformational tendencies of amino acids". Proteins. 60 (4): 679–89. doi:10.1002/prot.20530. PMID 16021632. S2CID 17410997.

web.archive.org

"ICBFF-2013". MBU, IISc, Bangalore. Archived from the original on 15 January 2013. Retrieved 28 January 2013.