Reference genome (English Wikipedia)

"Golden path length | VectorBase". www.vectorbase.org. Archived from the original on 2020-08-07. Retrieved 2016-12-12.
"Genome List - Genome - NCBI". www.ncbi.nlm.nih.gov. Archived from the original on November 28, 2011. Retrieved 2022-08-18.
"Species List". uswest.ensembl.org. Archived from the original on 2022-08-06. Retrieved 2022-08-18.

worldcat.org (Global: 5^th place; English: 5^th place)

search.worldcat.org

Ejigu, Girum Fitihamlak; Jung, Jaehee (2020-09-18). "Review on the Computational Genome Annotation of Sequences Obtained by Next-Generation Sequencing". Biology. 9 (9): 295. doi:10.3390/biology9090295. ISSN 2079-7737. PMC 7565776. PMID 32962098.
Giani, Alice Maria; Gallo, Guido Roberto; Gianfranceschi, Luca; Formenti, Giulio (2020-01-01). "Long walk to genomics: History and current approaches to genome sequencing and assembly". Computational and Structural Biotechnology Journal. 18: 9–19. doi:10.1016/j.csbj.2019.11.002. ISSN 2001-0370. PMC 6926122. PMID 31890139.
Ballouz, Sara; Dobin, Alexander; Gillis, Jesse A. (2019-08-09). "Is it time to change the reference genome?". Genome Biology. 20 (1): 159. doi:10.1186/s13059-019-1774-4. ISSN 1474-760X. PMC 6688217. PMID 31399121.
Nurk, Sergey; Koren, Sergey; Rhie, Arang; Rautiainen, Mikko; Bzikadze, Andrey V.; Mikheenko, Alla; Vollger, Mitchell R.; Altemose, Nicolas; Uralsky, Lev; Gershman, Ariel; Aganezov, Sergey; Hoyt, Savannah J.; Diekhans, Mark; Logsdon, Glennis A.; Alonge, Michael (April 2022). "The complete sequence of a human genome". Science. 376 (6588): 44–53. Bibcode:2022Sci...376...44N. doi:10.1126/science.abj6987. ISSN 0036-8075. PMC 9186530. PMID 35357919.
Aganezov, Sergey; Yan, Stephanie M.; Soto, Daniela C.; Kirsche, Melanie; Zarate, Samantha; Avdeyev, Pavel; Taylor, Dylan J.; Shafin, Kishwar; Shumate, Alaina; Xiao, Chunlin; Wagner, Justin; McDaniel, Jennifer; Olson, Nathan D.; Sauria, Michael E. G.; Vollger, Mitchell R. (April 2022). "A complete reference genome improves analysis of human genetic variation". Science. 376 (6588) eabl3533. doi:10.1126/science.abl3533. ISSN 0036-8075. PMC 9336181. PMID 35357935.
Miga, Karen H.; Wang, Ting (2021-08-31). "The Need for a Human Pangenome Reference Sequence". Annual Review of Genomics and Human Genetics. 22 (1): 81–102. doi:10.1146/annurev-genom-120120-081921. ISSN 1527-8204. PMC 8410644. PMID 33929893.
Flicek, P.; Aken, B. L.; Beal, K.; Ballester, B.; Caccamo, M.; Chen, Y.; Clarke, L.; Coates, G.; Cunningham, F.; Cutts, T.; Down, T.; Dyer, S. C.; Eyre, T.; Fitzgerald, S.; Fernandez-Banet, J. (2007-12-23). "Ensembl 2008". Nucleic Acids Research. 36 (Database): D707 – D714. doi:10.1093/nar/gkm988. ISSN 0305-1048. PMC 2238821. PMID 18000006.
Luo, Junwei; Wei, Yawei; Lyu, Mengna; Wu, Zhengjiang; Liu, Xiaoyan; Luo, Huimin; Yan, Chaokun (2021-09-02). "A comprehensive review of scaffolding methods in genome assembly". Briefings in Bioinformatics. 22 (5) bbab033. doi:10.1093/bib/bbab033. ISSN 1477-4054. PMID 33634311.
Meader, Stephen; Hillier, LaDeana W.; Locke, Devin; Ponting, Chris P.; Lunter, Gerton (May 2010). "Genome assembly quality: Assessment and improvement using the neutral indel model". Genome Research. 20 (5): 675–684. doi:10.1101/gr.096966.109. ISSN 1088-9051. PMC 2860169. PMID 20305016.
Rice, Edward S.; Green, Richard E. (2019-02-15). "New Approaches for Genome Assembly and Scaffolding". Annual Review of Animal Biosciences. 7 (1): 17–40. doi:10.1146/annurev-animal-020518-115344. ISSN 2165-8102. PMID 30485757. S2CID 54121772.
Cao, Minh Duc; Nguyen, Son Hoang; Ganesamoorthy, Devika; Elliott, Alysha G.; Cooper, Matthew A.; Coin, Lachlan J. M. (2017-02-20). "Scaffolding and completing genome assemblies in real-time with nanopore sequencing". Nature Communications. 8 (1) 14515. Bibcode:2017NatCo...814515C. doi:10.1038/ncomms14515. ISSN 2041-1723. PMC 5321748. PMID 28218240.
Mende, Daniel R.; Waller, Alison S.; Sunagawa, Shinichi; Järvelin, Aino I.; Chan, Michelle M.; Arumugam, Manimozhiyan; Raes, Jeroen; Bork, Peer (2012-02-23). "Assessment of Metagenomic Assembly Using Simulated Next Generation Sequencing Data". PLOS ONE. 7 (2) e31386. Bibcode:2012PLoSO...731386M. doi:10.1371/journal.pone.0031386. ISSN 1932-6203. PMC 3285633. PMID 22384016.
Alhakami, Hind; Mirebrahim, Hamid; Lonardi, Stefano (2017-05-18). "A comparative evaluation of genome assembly reconciliation tools". Genome Biology. 18 (1): 93. doi:10.1186/s13059-017-1213-3. ISSN 1474-7596. PMC 5436433. PMID 28521789.
Altemose, Nicolas; Logsdon, Glennis A.; Bzikadze, Andrey V.; Sidhwani, Pragya; Langley, Sasha A.; Caldas, Gina V.; Hoyt, Savannah J.; Uralsky, Lev; Ryabov, Fedor D.; Shew, Colin J.; Sauria, Michael E. G.; Borchers, Matthew; Gershman, Ariel; Mikheenko, Alla; Shepelev, Valery A. (April 2022). "Complete genomic and epigenetic maps of human centromeres". Science. 376 (6588) eabl4178. doi:10.1126/science.abl4178. ISSN 0036-8075. PMC 9233505. PMID 35357911.
Church, Deanna M. (April 2022). "A next-generation human genome sequence". Science. 376 (6588): 34–35. Bibcode:2022Sci...376...34C. doi:10.1126/science.abo5367. ISSN 0036-8075. PMID 35357937.
Steinberg, Karyn Meltz; Schneider, Valerie A.; Graves-Lindsay, Tina A.; Fulton, Robert S.; Agarwala, Richa; Huddleston, John; Shiryev, Sergey A.; Morgulis, Aleksandr; Surti, Urvashi; Warren, Wesley C.; Church, Deanna M.; Eichler, Evan E.; Wilson, Richard K. (December 2014). "Single haplotype assembly of the human genome from a hydatidiform mole". Genome Research. 24 (12): 2066–2076. doi:10.1101/gr.180893.114. ISSN 1088-9051. PMC 4248323. PMID 25373144.

Reference genome (English Wikipedia)

100kgenomes.org (Global: low place; English: low place)

africanbiogenome.org (Global: low place; English: low place)

annualreviews.org (Global: 3,867th place; English: 3,957th place)

bcm.edu (Global: low place; English: low place)

hgsc.bcm.edu

csbj.org (Global: low place; English: low place)

doe.gov (Global: 2,463rd place; English: 2,220th place)

mycocosm.jgi.doe.gov

doi.org (Global: 2nd place; English: 2nd place)

ensembl.org (Global: 1,626th place; English: 1,007th place)

ensembl.org

uswest.ensembl.org

genome.gov (Global: 9,308th place; English: 8,899th place)

genomeref.blogspot.com (Global: low place; English: low place)

harvard.edu (Global: 18th place; English: 17th place)

ui.adsabs.harvard.edu

nih.gov (Global: 4th place; English: 4th place)

ncbi.nlm.nih.gov

pubmed.ncbi.nlm.nih.gov

nytimes.com (Global: 7th place; English: 7th place)

science.org (Global: 1,160th place; English: 737th place)

semanticscholar.org (Global: 11th place; English: 8th place)

api.semanticscholar.org

seqanswers.com (Global: low place; English: low place)

ucsc.edu (Global: 3,619th place; English: 2,621st place)

genome.ucsc.edu

hgdownload.soe.ucsc.edu

vectorbase.org (Global: low place; English: low place)

web.archive.org (Global: 1st place; English: 1st place)

worldcat.org (Global: 5th place; English: 5th place)

search.worldcat.org

annualreviews.org (Global: 3,867^th place; English: 3,957^th place)

doe.gov (Global: 2,463^rd place; English: 2,220^th place)

doi.org (Global: 2^nd place; English: 2^nd place)

ensembl.org (Global: 1,626^th place; English: 1,007^th place)

genome.gov (Global: 9,308^th place; English: 8,899^th place)

harvard.edu (Global: 18^th place; English: 17^th place)

nih.gov (Global: 4^th place; English: 4^th place)

nytimes.com (Global: 7^th place; English: 7^th place)

science.org (Global: 1,160^th place; English: 737^th place)

semanticscholar.org (Global: 11^th place; English: 8^th place)

ucsc.edu (Global: 3,619^th place; English: 2,621^st place)

web.archive.org (Global: 1^st place; English: 1^st place)

worldcat.org (Global: 5^th place; English: 5^th place)