Ribonuclease H (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Ribonuclease H" in English language version.

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Hollis T, Shaban NM (2011-01-01). "Structure and Function of RNase H Enzymes". In Nicholson AW (ed.). Ribonucleases. Nucleic Acids and Molecular Biology. Springer Berlin Heidelberg. pp. 299–317. doi:10.1007/978-3-642-21078-5_12. ISBN 978-3-642-21077-8.

doi.org

PDB: 1JL1; Goedken ER, Marqusee S (December 2001). "Native-state energetics of a thermostabilized variant of ribonuclease HI". Journal of Molecular Biology. 314 (4): 863–71. doi:10.1006/jmbi.2001.5184. PMID 11734003.
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Crow YJ, Leitch A, Hayward BE, Garner A, Parmar R, Griffith E, et al. (August 2006). "Mutations in genes encoding ribonuclease H2 subunits cause Aicardi-Goutières syndrome and mimic congenital viral brain infection". Nature Genetics. 38 (8): 910–6. doi:10.1038/ng1842. PMID 16845400. S2CID 8076225.
Figiel M, Nowotny M (August 2014). "Crystal structure of RNase H3-substrate complex reveals parallel evolution of RNA/DNA hybrid recognition". Nucleic Acids Research. 42 (14): 9285–94. doi:10.1093/nar/gku615. PMC 4132731. PMID 25016521.
Davies JF, Hostomska Z, Hostomsky Z, Jordan SR, Matthews DA (April 1991). "Crystal structure of the ribonuclease H domain of HIV-1 reverse transcriptase". Science. 252 (5002): 88–95. Bibcode:1991Sci...252...88D. doi:10.1126/science.1707186. PMID 1707186.
Hansen J, Schulze T, Mellert W, Moelling K (January 1988). "Identification and characterization of HIV-specific RNase H by monoclonal antibody". The EMBO Journal. 7 (1): 239–43. doi:10.1002/j.1460-2075.1988.tb02805.x. PMC 454263. PMID 2452083.
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Schmitt TJ, Clark JE, Knotts TA (December 2009). "Thermal and mechanical multistate folding of ribonuclease H". The Journal of Chemical Physics. 131 (23): 235101. Bibcode:2009JChPh.131w5101S. doi:10.1063/1.3270167. PMID 20025349.
Nowotny M, Cerritelli SM, Ghirlando R, Gaidamakov SA, Crouch RJ, Yang W (April 2008). "Specific recognition of RNA/DNA hybrid and enhancement of human RNase H1 activity by HBD". The EMBO Journal. 27 (7): 1172–81. doi:10.1038/emboj.2008.44. PMC 2323259. PMID 18337749.
Cecconi C, Shank EA, Bustamante C, Marqusee S (September 2005). "Direct observation of the three-state folding of a single protein molecule". Science. 309 (5743): 2057–60. Bibcode:2005Sci...309.2057C. doi:10.1126/science.1116702. PMID 16179479. S2CID 43823877.
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Schultz SJ, Champoux JJ (June 2008). "RNase H activity: structure, specificity, and function in reverse transcription". Virus Research. 134 (1–2): 86–103. doi:10.1016/j.virusres.2007.12.007. PMC 2464458. PMID 18261820.
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Bubeck D, Reijns MA, Graham SC, Astell KR, Jones EY, Jackson AP (May 2011). "PCNA directs type 2 RNase H activity on DNA replication and repair substrates". Nucleic Acids Research. 39 (9): 3652–66. doi:10.1093/nar/gkq980. PMC 3089482. PMID 21245041.
Figiel M, Chon H, Cerritelli SM, Cybulska M, Crouch RJ, Nowotny M (March 2011). "The structural and biochemical characterization of human RNase H2 complex reveals the molecular basis for substrate recognition and Aicardi-Goutières syndrome defects". The Journal of Biological Chemistry. 286 (12): 10540–50. doi:10.1074/jbc.M110.181974. PMC 3060507. PMID 21177858.
Amon JD, Koshland D (December 2016). "RNase H enables efficient repair of R-loop induced DNA damage". eLife. 5: e20533. doi:10.7554/eLife.20533. PMC 5215079. PMID 27938663.
Lima WF, Murray HM, Damle SS, Hart CE, Hung G, De Hoyos CL, et al. (June 2016). "Viable RNaseH1 knockout mice show RNaseH1 is essential for R loop processing, mitochondrial and liver function". Nucleic Acids Research. 44 (11): 5299–312. doi:10.1093/nar/gkw350. PMC 4914116. PMID 27131367.
Arudchandran A, Cerritelli S, Narimatsu S, Itaya M, Shin DY, Shimada Y, Crouch RJ (October 2000). "The absence of ribonuclease H1 or H2 alters the sensitivity of Saccharomyces cerevisiae to hydroxyurea, caffeine and ethyl methanesulphonate: implications for roles of RNases H in DNA replication and repair". Genes to Cells. 5 (10): 789–802. doi:10.1046/j.1365-2443.2000.00373.x. PMID 11029655.
Cerritelli SM, Frolova EG, Feng C, Grinberg A, Love PE, Crouch RJ (March 2003). "Failure to produce mitochondrial DNA results in embryonic lethality in Rnaseh1 null mice". Molecular Cell. 11 (3): 807–15. doi:10.1016/s1097-2765(03)00088-1. PMID 12667461.
Reyes A, Melchionda L, Nasca A, Carrara F, Lamantea E, Zanolini A, et al. (July 2015). "RNASEH1 Mutations Impair mtDNA Replication and Cause Adult-Onset Mitochondrial Encephalomyopathy". American Journal of Human Genetics. 97 (1): 186–93. doi:10.1016/j.ajhg.2015.05.013. PMC 4572567. PMID 26094573.
Hollis T, Shaban NM (2011-01-01). "Structure and Function of RNase H Enzymes". In Nicholson AW (ed.). Ribonucleases. Nucleic Acids and Molecular Biology. Springer Berlin Heidelberg. pp. 299–317. doi:10.1007/978-3-642-21078-5_12. ISBN 978-3-642-21077-8.
Chon H, Vassilev A, DePamphilis ML, Zhao Y, Zhang J, Burgers PM, et al. (January 2009). "Contributions of the two accessory subunits, RNASEH2B and RNASEH2C, to the activity and properties of the human RNase H2 complex". Nucleic Acids Research. 37 (1): 96–110. doi:10.1093/nar/gkn913. PMC 2615623. PMID 19015152.
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Wahba L, Amon JD, Koshland D, Vuica-Ross M (December 2011). "RNase H and multiple RNA biogenesis factors cooperate to prevent RNA:DNA hybrids from generating genome instability". Molecular Cell. 44 (6): 978–88. doi:10.1016/j.molcel.2011.10.017. PMC 3271842. PMID 22195970.
Kim N, Huang SN, Williams JS, Li YC, Clark AB, Cho JE, et al. (June 2011). "Mutagenic processing of ribonucleotides in DNA by yeast topoisomerase I". Science. 332 (6037): 1561–4. Bibcode:2011Sci...332.1561K. doi:10.1126/science.1205016. PMC 3380281. PMID 21700875.
Ohtani N, Haruki M, Morikawa M, Crouch RJ, Itaya M, Kanaya S (January 1999). "Identification of the genes encoding Mn2+-dependent RNase HII and Mg2+-dependent RNase HIII from Bacillus subtilis: classification of RNases H into three families". Biochemistry. 38 (2): 605–18. doi:10.1021/bi982207z. PMID 9888800.
Kochiwa H, Tomita M, Kanai A (July 2007). "Evolution of ribonuclease H genes in prokaryotes to avoid inheritance of redundant genes". BMC Evolutionary Biology. 7 (1): 128. Bibcode:2007BMCEE...7..128K. doi:10.1186/1471-2148-7-128. PMC 1950709. PMID 17663799.
Alla NR, Nicholson AW (December 2012). "Evidence for a dual functional role of a conserved histidine in RNA·DNA heteroduplex cleavage by human RNase H1". FEBS Journal. 279 (24): 4492–500. doi:10.1111/febs.12035. PMC 3515698. PMID 23078533.
Rosta E, Yang W, Hummer G (February 2014). "Calcium inhibition of ribonuclease H1 two-metal ion catalysis". Journal of the American Chemical Society. 136 (8): 3137–44. doi:10.1021/ja411408x. PMC 3985467. PMID 24499076.
Dürr S, Bohusewicz O, Berta D, Suardiaz R, Peter C, Jambrina PG, Peter C, Shao Y, Rosta E (16 June 2021). "The Role of Conserved Residues in the DEDDh Motif: the Proton-Transfer Mechanism of HIV-1 RNase H". ACS Catalysis. 11 (13): 7915–7927. doi:10.1021/acscatal.1c01493. S2CID 236285134.
Gan J, Shaw G, Tropea JE, Waugh DS, Court DL, Ji X (January 2008). "A stepwise model for double-stranded RNA processing by ribonuclease III". Mol Microbiol. 67 (1): 143–54. doi:10.1111/j.1365-2958.2007.06032.x. PMID 18047582.
Samara NL, Yang W (August 2019). "Cation trafficking propels RNA hydrolysis". Nature Structural & Molecular Biology. 25 (8): 715–721. doi:10.1038/s41594-018-0099-4. PMC 6110950. PMID 30076410.
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Malik HS (2005). "Ribonuclease H evolution in retrotransposable elements". Cytogenetic and Genome Research. 110 (1–4): 392–401. doi:10.1159/000084971. PMID 16093691. S2CID 7481781.
Figiel M, Chon H, Cerritelli SM, Cybulska M, Crouch RJ, Nowotny M (March 2011). "The structural and biochemical characterization of human RNase H2 complex reveals the molecular basis for substrate recognition and Aicardi-Goutières syndrome defects". The Journal of Biological Chemistry. 286 (12): 10540–50. doi:10.1074/jbc.M110.181974. PMC 3060507. PMID 21177858.
Orcesi S, La Piana R, Fazzi E (2009). "Aicardi-Goutieres syndrome". British Medical Bulletin. 89: 183–201. doi:10.1093/bmb/ldn049. PMID 19129251.
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Crow YJ, Chase DS, Lowenstein Schmidt J, Szynkiewicz M, Forte GM, Gornall HL, et al. (February 2015). "Characterization of human disease phenotypes associated with mutations in TREX1, RNASEH2A, RNASEH2B, RNASEH2C, SAMHD1, ADAR, and IFIH1". American Journal of Medical Genetics. Part A. 167A (2): 296–312. doi:10.1002/ajmg.a.36887. PMC 4382202. PMID 25604658.
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Sarafianos SG, Das K, Tantillo C, Clark AD, Ding J, Whitcomb JM, et al. (March 2001). "Crystal structure of HIV-1 reverse transcriptase in complex with a polypurine tract RNA:DNA". The EMBO Journal. 20 (6): 1449–61. doi:10.1093/emboj/20.6.1449. PMC 145536. PMID 11250910.
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Moelling K, Broecker F, Kerrigan JE (2014-01-01). "RNase H: Specificity, Mechanisms of Action, and Antiviral Target". In Vicenzi E, Poli G (eds.). Human Retroviruses. Methods in Molecular Biology. Vol. 1087. Humana Press. pp. 71–84. doi:10.1007/978-1-62703-670-2_7. ISBN 978-1-62703-669-6. PMID 24158815.
Mizuno M, Yasukawa K, Inouye K (February 2010). "Insight into the mechanism of the stabilization of moloney murine leukaemia virus reverse transcriptase by eliminating RNase H activity". Bioscience, Biotechnology, and Biochemistry. 74 (2): 440–2. doi:10.1271/bbb.90777. PMID 20139597. S2CID 28110533.
Coté ML, Roth MJ (June 2008). "Murine leukemia virus reverse transcriptase: structural comparison with HIV-1 reverse transcriptase". Virus Research. 134 (1–2): 186–202. doi:10.1016/j.virusres.2008.01.001. PMC 2443788. PMID 18294720.
Nowotny M, Figiel M (2013-01-01). "The RNase H Domain: Structure, Function and Mechanism". In LeGrice S, Gotte M (eds.). Human Immunodeficiency Virus Reverse Transcriptase. Springer New York. pp. 53–75. doi:10.1007/978-1-4614-7291-9_3. ISBN 978-1-4614-7290-2.
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Nichols NM, Yue D (2001-01-01). Ribonucleases. Vol. Chapter 3. John Wiley & Sons, Inc. pp. Unit3.13. doi:10.1002/0471142727.mb0313s84. ISBN 978-0-471-14272-0. PMID 18972385. S2CID 221604377. {{cite book}}: |journal= ignored (help)
Loo JF, Wang SS, Peng F, He JA, He L, Guo YC, et al. (July 2015). "A non-PCR SPR platform using RNase H to detect MicroRNA 29a-3p from throat swabs of human subjects with influenza A virus H1N1 infection". The Analyst. 140 (13): 4566–75. Bibcode:2015Ana...140.4566L. doi:10.1039/C5AN00679A. PMID 26000345. S2CID 28974459.
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Dobosy JR, Rose SD, Beltz KR, Rupp SM, Powers KM, Behlke MA, Walder JA (August 2011). "RNase H-dependent PCR (rhPCR): improved specificity and single nucleotide polymorphism detection using blocked cleavable primers". BMC Biotechnology. 11: 80. doi:10.1186/1472-6750-11-80. PMC 3224242. PMID 21831278.
Stein H, Hausen P (October 1969). "Enzyme from calf thymus degrading the RNA moiety of DNA-RNA Hybrids: effect on DNA-dependent RNA polymerase". Science. 166 (3903): 393–5. Bibcode:1969Sci...166..393S. doi:10.1126/science.166.3903.393. PMID 5812039. S2CID 43683241.
Hausen P, Stein H (June 1970). "Ribonuclease H. An enzyme degrading the RNA moiety of DNA-RNA hybrids". European Journal of Biochemistry. 14 (2): 278–83. doi:10.1111/j.1432-1033.1970.tb00287.x. PMID 5506170.
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Itaya M (November 1990). "Isolation and characterization of a second RNase H (RNase HII) of Escherichia coli K-12 encoded by the rnhB gene". Proceedings of the National Academy of Sciences of the United States of America. 87 (21): 8587–91. Bibcode:1990PNAS...87.8587I. doi:10.1073/pnas.87.21.8587. PMC 55002. PMID 2172991.
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Frank P, Braunshofer-Reiter C, Wintersberger U, Grimm R, Büsen W (October 1998). "Cloning of the cDNA encoding the large subunit of human RNase HI, a homologue of the prokaryotic RNase HII". Proceedings of the National Academy of Sciences of the United States of America. 95 (22): 12872–7. Bibcode:1998PNAS...9512872F. doi:10.1073/pnas.95.22.12872. PMC 23637. PMID 9789007.
Frank P, Braunshofer-Reiter C, Wintersberger U (January 1998). "Yeast RNase H(35) is the counterpart of the mammalian RNase HI, and is evolutionarily related to prokaryotic RNase HII". FEBS Letters. 421 (1): 23–6. doi:10.1016/s0014-5793(97)01528-7. PMID 9462832.
Jeong HS, Backlund PS, Chen HC, Karavanov AA, Crouch RJ (2004-01-01). "RNase H2 of Saccharomyces cerevisiae is a complex of three proteins". Nucleic Acids Research. 32 (2): 407–14. doi:10.1093/nar/gkh209. PMC 373335. PMID 14734815.

harvard.edu

ui.adsabs.harvard.edu

Davies JF, Hostomska Z, Hostomsky Z, Jordan SR, Matthews DA (April 1991). "Crystal structure of the ribonuclease H domain of HIV-1 reverse transcriptase". Science. 252 (5002): 88–95. Bibcode:1991Sci...252...88D. doi:10.1126/science.1707186. PMID 1707186.
Schmitt TJ, Clark JE, Knotts TA (December 2009). "Thermal and mechanical multistate folding of ribonuclease H". The Journal of Chemical Physics. 131 (23): 235101. Bibcode:2009JChPh.131w5101S. doi:10.1063/1.3270167. PMID 20025349.
Cecconi C, Shank EA, Bustamante C, Marqusee S (September 2005). "Direct observation of the three-state folding of a single protein molecule". Science. 309 (5743): 2057–60. Bibcode:2005Sci...309.2057C. doi:10.1126/science.1116702. PMID 16179479. S2CID 43823877.
Kim N, Huang SN, Williams JS, Li YC, Clark AB, Cho JE, et al. (June 2011). "Mutagenic processing of ribonucleotides in DNA by yeast topoisomerase I". Science. 332 (6037): 1561–4. Bibcode:2011Sci...332.1561K. doi:10.1126/science.1205016. PMC 3380281. PMID 21700875.
Kochiwa H, Tomita M, Kanai A (July 2007). "Evolution of ribonuclease H genes in prokaryotes to avoid inheritance of redundant genes". BMC Evolutionary Biology. 7 (1): 128. Bibcode:2007BMCEE...7..128K. doi:10.1186/1471-2148-7-128. PMC 1950709. PMID 17663799.
Loo JF, Wang SS, Peng F, He JA, He L, Guo YC, et al. (July 2015). "A non-PCR SPR platform using RNase H to detect MicroRNA 29a-3p from throat swabs of human subjects with influenza A virus H1N1 infection". The Analyst. 140 (13): 4566–75. Bibcode:2015Ana...140.4566L. doi:10.1039/C5AN00679A. PMID 26000345. S2CID 28974459.
Stein H, Hausen P (October 1969). "Enzyme from calf thymus degrading the RNA moiety of DNA-RNA Hybrids: effect on DNA-dependent RNA polymerase". Science. 166 (3903): 393–5. Bibcode:1969Sci...166..393S. doi:10.1126/science.166.3903.393. PMID 5812039. S2CID 43683241.
Itaya M (November 1990). "Isolation and characterization of a second RNase H (RNase HII) of Escherichia coli K-12 encoded by the rnhB gene". Proceedings of the National Academy of Sciences of the United States of America. 87 (21): 8587–91. Bibcode:1990PNAS...87.8587I. doi:10.1073/pnas.87.21.8587. PMC 55002. PMID 2172991.
Frank P, Braunshofer-Reiter C, Wintersberger U, Grimm R, Büsen W (October 1998). "Cloning of the cDNA encoding the large subunit of human RNase HI, a homologue of the prokaryotic RNase HII". Proceedings of the National Academy of Sciences of the United States of America. 95 (22): 12872–7. Bibcode:1998PNAS...9512872F. doi:10.1073/pnas.95.22.12872. PMC 23637. PMID 9789007.

nbn-resolving.de

Dürr S, Bohusewicz O, Berta D, Suardiaz R, Peter C, Jambrina PG, Peter C, Shao Y, Rosta E (16 June 2021). "The Role of Conserved Residues in the DEDDh Motif: the Proton-Transfer Mechanism of HIV-1 RNase H". ACS Catalysis. 11 (13): 7915–7927. doi:10.1021/acscatal.1c01493. S2CID 236285134.

nih.gov

pubmed.ncbi.nlm.nih.gov

PDB: 1JL1; Goedken ER, Marqusee S (December 2001). "Native-state energetics of a thermostabilized variant of ribonuclease HI". Journal of Molecular Biology. 314 (4): 863–71. doi:10.1006/jmbi.2001.5184. PMID 11734003.
Cerritelli SM, Crouch RJ (March 2009). "Ribonuclease H: the enzymes in eukaryotes". The FEBS Journal. 276 (6): 1494–505. doi:10.1111/j.1742-4658.2009.06908.x. PMC 2746905. PMID 19228196.
Crow YJ, Leitch A, Hayward BE, Garner A, Parmar R, Griffith E, et al. (August 2006). "Mutations in genes encoding ribonuclease H2 subunits cause Aicardi-Goutières syndrome and mimic congenital viral brain infection". Nature Genetics. 38 (8): 910–6. doi:10.1038/ng1842. PMID 16845400. S2CID 8076225.
Figiel M, Nowotny M (August 2014). "Crystal structure of RNase H3-substrate complex reveals parallel evolution of RNA/DNA hybrid recognition". Nucleic Acids Research. 42 (14): 9285–94. doi:10.1093/nar/gku615. PMC 4132731. PMID 25016521.
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ncbi.nlm.nih.gov

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Nowotny M, Cerritelli SM, Ghirlando R, Gaidamakov SA, Crouch RJ, Yang W (April 2008). "Specific recognition of RNA/DNA hybrid and enhancement of human RNase H1 activity by HBD". The EMBO Journal. 27 (7): 1172–81. doi:10.1038/emboj.2008.44. PMC 2323259. PMID 18337749.
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Champoux JJ, Schultz SJ (March 2009). "Ribonuclease H: properties, substrate specificity and roles in retroviral reverse transcription". The FEBS Journal. 276 (6): 1506–16. doi:10.1111/j.1742-4658.2009.06909.x. PMC 2742777. PMID 19228195.
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Chon H, Vassilev A, DePamphilis ML, Zhao Y, Zhang J, Burgers PM, et al. (January 2009). "Contributions of the two accessory subunits, RNASEH2B and RNASEH2C, to the activity and properties of the human RNase H2 complex". Nucleic Acids Research. 37 (1): 96–110. doi:10.1093/nar/gkn913. PMC 2615623. PMID 19015152.
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Samara NL, Yang W (August 2019). "Cation trafficking propels RNA hydrolysis". Nature Structural & Molecular Biology. 25 (8): 715–721. doi:10.1038/s41594-018-0099-4. PMC 6110950. PMID 30076410.
Ustyantsev K, Blinov A, Smyshlyaev G (14 March 2017). "Convergence of retrotransposons in oomycetes and plants". Mobile DNA. 8 (1): 4. doi:10.1186/s13100-017-0087-y. PMC 5348765. PMID 28293305.
Ustyantsev K, Novikova O, Blinov A, Smyshlyaev G (May 2015). "Convergent evolution of ribonuclease h in LTR retrotransposons and retroviruses". Molecular Biology and Evolution. 32 (5): 1197–207. doi:10.1093/molbev/msv008. PMC 4408406. PMID 25605791.
Figiel M, Chon H, Cerritelli SM, Cybulska M, Crouch RJ, Nowotny M (March 2011). "The structural and biochemical characterization of human RNase H2 complex reveals the molecular basis for substrate recognition and Aicardi-Goutières syndrome defects". The Journal of Biological Chemistry. 286 (12): 10540–50. doi:10.1074/jbc.M110.181974. PMC 3060507. PMID 21177858.
Crow YJ, Chase DS, Lowenstein Schmidt J, Szynkiewicz M, Forte GM, Gornall HL, et al. (February 2015). "Characterization of human disease phenotypes associated with mutations in TREX1, RNASEH2A, RNASEH2B, RNASEH2C, SAMHD1, ADAR, and IFIH1". American Journal of Medical Genetics. Part A. 167A (2): 296–312. doi:10.1002/ajmg.a.36887. PMC 4382202. PMID 25604658.
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