Ribosomal RNA (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Ribosomal RNA" in English language version.

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105nih.gov

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64doi.org

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15harvard.edu

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2britannica.com

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1uni-goettingen.de

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1fasebj.org

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britannica.com

"Ribosome | Definition, Function, Formation, Role, Importance, & Facts | Britannica". Encyclopedia Britannica. 2024-03-08. Retrieved 2024-03-29.
"Ribosomal RNA | genetics". Encyclopedia Britannica. Retrieved 2019-10-02.

doi.org

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Tirumalai, MR; Kaelber, JT; Park, DR; Tran, Q; Fox, GE (31 August 2020). "Cryo-electron microscopy visualization of a large insertion in the 5S ribosomal RNA of the extremely halophilic archaeon Halococcus morrhuae". FEBS Open Bio. 10 (10): 1938–1946. doi:10.1002/2211-5463.12962. PMC 7530397. PMID 32865340.
Woese CR, Fox GE (November 1977). "Phylogenetic structure of the prokaryotic domain: the primary kingdoms". Proc. Natl. Acad. Sci. USA. 74 (11): 5088–5090. Bibcode:1977PNAS...74.5088W. doi:10.1073/pnas.74.11.5088. PMC 432104. PMID 270744.
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Woolford JL, Baserga SJ (November 2013). "Ribosome biogenesis in the yeast Saccharomyces cerevisiae". Genetics. 195 (3): 643–81. doi:10.1534/genetics.113.153197. PMC 3813855. PMID 24190922.
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Moore PB, Steitz TA (July 2002). "The involvement of RNA in ribosome function". Nature. 418 (6894): 229–35. Bibcode:2002Natur.418..229M. doi:10.1038/418229a. PMID 12110899. S2CID 4324362.
Kaushal, PS; Sharma, MR; Agrawal, RK (July 2015). "The 55S mammalian mitochondrial ribosome and its tRNA-exit region". Biochimie. 114: 119–26. doi:10.1016/j.biochi.2015.03.013. PMC 4772884. PMID 25797916.
Stoddard SF, Smith BJ, Hein R, Roller BR, Schmidt TM (January 2015). "rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development". Nucleic Acids Research. 43 (Database issue): D593-8. doi:10.1093/nar/gku1201. PMC 4383981. PMID 25414355.
Lafontaine DL, Tollervey D (July 2001). "The function and synthesis of ribosomes". Nature Reviews Molecular Cell Biology. 2 (7): 514–20. doi:10.1038/35080045. hdl:1842/729. PMID 11433365. S2CID 2637106.
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Kim JH, Dilthey AT, Nagaraja R, Lee HS, Koren S, Dudekula D, et al. (July 2018). "Variation in human chromosome 21 ribosomal RNA genes characterized by TAR cloning and long-read sequencing". Nucleic Acids Research. 46 (13): 6712–6725. doi:10.1093/nar/gky442. PMC 6061828. PMID 29788454.
Parks MM, Kurylo CM, Dass RA, Bojmar L, Lyden D, Vincent CT, Blanchard SC (February 2018). "Variant ribosomal RNA alleles are conserved and exhibit tissue-specific expression". Science Advances. 4 (2): eaao0665. Bibcode:2018SciA....4..665P. doi:10.1126/sciadv.aao0665. PMC 5829973. PMID 29503865.
Shimada, T. (August 1992). "Distribution of split 5.8S ribosomal RNA in Diptera". Insect Molecular Biology. 1 (1): 45–48. doi:10.1111/j.1365-2583.1993.tb00076.x. ISSN 0962-1075. PMID 1343775. S2CID 46570307.
Yusupov MM, Yusupova GZ, Baucom A, Lieberman K, Earnest TN, Cate JH, Noller HF (May 2001). "Crystal structure of the ribosome at 5.5 A resolution". Science. 292 (5518): 883–96. Bibcode:2001Sci...292..883Y. doi:10.1126/science.1060089. PMID 11283358. S2CID 39505192.
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Fernández-Tornero C, Moreno-Morcillo M, Rashid UJ, Taylor NM, Ruiz FM, Gruene T, et al. (October 2013). "Crystal structure of the 14-subunit RNA polymerase I". Nature. 502 (7473): 644–9. Bibcode:2013Natur.502..644F. doi:10.1038/nature12636. PMID 24153184. S2CID 205235881.
Engel C, Sainsbury S, Cheung AC, Kostrewa D, Cramer P (October 2013). "RNA polymerase I structure and transcription regulation". Nature. 502 (7473): 650–5. Bibcode:2013Natur.502..650E. doi:10.1038/nature12712. hdl:11858/00-001M-0000-0015-3B48-5. PMID 24153182. S2CID 205236187.
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Woodson SA (December 2011). "RNA folding pathways and the self-assembly of ribosomes". Accounts of Chemical Research. 44 (12): 1312–9. doi:10.1021/ar2000474. PMC 4361232. PMID 21714483.
Sloan KE, Warda AS, Sharma S, Entian KD, Lafontaine DL, Bohnsack MT (September 2017). "Tuning the ribosome: The influence of rRNA modification on eukaryotic ribosome biogenesis and function". RNA Biology. 14 (9): 1138–1152. doi:10.1080/15476286.2016.1259781. PMC 5699541. PMID 27911188.
Gigova A, Duggimpudi S, Pollex T, Schaefer M, Koš M (October 2014). "A cluster of methylations in the domain IV of 25S rRNA is required for ribosome stability". RNA. 20 (10): 1632–44. doi:10.1261/rna.043398.113. PMC 4174444. PMID 25125595.
Metodiev MD, Lesko N, Park CB, Cámara Y, Shi Y, Wibom R, et al. (April 2009). "Methylation of 12S rRNA is necessary for in vivo stability of the small subunit of the mammalian mitochondrial ribosome". Cell Metabolism. 9 (4): 386–97. doi:10.1016/j.cmet.2009.03.001. PMID 19356719.
Thompson M, Haeusler RA, Good PD, Engelke DR (November 2003). "Nucleolar clustering of dispersed tRNA genes". Science. 302 (5649): 1399–401. Bibcode:2003Sci...302.1399T. doi:10.1126/science.1089814. PMC 3783965. PMID 14631041.
Smit S, Widmann J, Knight R (2007). "Evolutionary rates vary among rRNA structural elements". Nucleic Acids Research. 35 (10): 3339–54. doi:10.1093/nar/gkm101. PMC 1904297. PMID 17468501.
Chan JC, Hannan KM, Riddell K, Ng PY, Peck A, Lee RS, et al. (August 2011). "AKT promotes rRNA synthesis and cooperates with c-MYC to stimulate ribosome biogenesis in cancer". Science Signaling. 4 (188): ra56. doi:10.1126/scisignal.2001754. PMID 21878679. S2CID 20979505.
Li S, Ibaragi S, Hu GF (May 2011). "Angiogenin as a molecular target for the treatment of prostate cancer". Current Cancer Therapy Reviews. 7 (2): 83–90. doi:10.2174/1573394711107020083. PMC 3131147. PMID 21743803.
Hoppe S, Bierhoff H, Cado I, Weber A, Tiebe M, Grummt I, Voit R (October 2009). "AMP-activated protein kinase adapts rRNA synthesis to cellular energy supply". Proceedings of the National Academy of Sciences of the United States of America. 106 (42): 17781–6. Bibcode:2009PNAS..10617781H. doi:10.1073/pnas.0909873106. PMC 2764937. PMID 19815529.
Liang XH, Liu Q, Fournier MJ (September 2009). "Loss of rRNA modifications in the decoding center of the ribosome impairs translation and strongly delays pre-rRNA processing". RNA. 15 (9): 1716–28. doi:10.1261/rna.1724409. PMC 2743053. PMID 19628622.
Larson K, Yan SJ, Tsurumi A, Liu J, Zhou J, Gaur K, et al. (January 2012). "Heterochromatin formation promotes longevity and represses ribosomal RNA synthesis". PLOS Genetics. 8 (1): e1002473. doi:10.1371/journal.pgen.1002473. PMC 3266895. PMID 22291607.
Gaal T, Bartlett MS, Ross W, Turnbough CL, Gourse RL (December 1997). "Transcription regulation by initiating NTP concentration: rRNA synthesis in bacteria". Science. 278 (5346): 2092–7. Bibcode:1997Sci...278.2092G. doi:10.1126/science.278.5346.2092. PMID 9405339.
Maeda M, Shimada T, Ishihama A (2015-12-30). "Strength and Regulation of Seven rRNA Promoters in Escherichia coli". PLOS ONE. 10 (12): e0144697. Bibcode:2015PLoSO..1044697M. doi:10.1371/journal.pone.0144697. PMC 4696680. PMID 26717514.
Gaal T, Bratton BP, Sanchez-Vazquez P, Sliwicki A, Sliwicki K, Vegel A, et al. (October 2016). "Colocalization of distant chromosomal loci in space in E. coli: a bacterial nucleolus". Genes & Development. 30 (20): 2272–2285. doi:10.1101/gad.290312.116. PMC 5110994. PMID 27898392.
Piir K, Paier A, Liiv A, Tenson T, Maiväli U (May 2011). "Ribosome degradation in growing bacteria". EMBO Reports. 12 (5): 458–62. doi:10.1038/embor.2011.47. PMC 3090016. PMID 21460796.
Brandman O, Hegde RS (January 2016). "Ribosome-associated protein quality control". Nature Structural & Molecular Biology. 23 (1): 7–15. doi:10.1038/nsmb.3147. PMC 4853245. PMID 26733220.
Fujii K, Kitabatake M, Sakata T, Miyata A, Ohno M (April 2009). "A role for ubiquitin in the clearance of nonfunctional rRNAs". Genes & Development. 23 (8): 963–74. doi:10.1101/gad.1775609. PMC 2675866. PMID 19390089.
Donovan, Bridget M.; Jarrell, Kelli L.; LaRiviere, Frederick J. (2011-04-01). "Investigating nonfunctional rRNA decay as a stress response in Saccharomyces cerevisiae". The FASEB Journal. 25 (1_supplement): 521.3. doi:10.1096/fasebj.25.1_supplement.521.3 (inactive 31 January 2024). ISSN 0892-6638.{{cite journal}}: CS1 maint: DOI inactive as of January 2024 (link)
LaRiviere FJ, Cole SE, Ferullo DJ, Moore MJ (November 2006). "A late-acting quality control process for mature eukaryotic rRNAs". Molecular Cell. 24 (4): 619–26. doi:10.1016/j.molcel.2006.10.008. PMID 17188037.
Michel JJ, McCarville JF, Xiong Y (June 2003). "A role for Saccharomyces cerevisiae Cul8 ubiquitin ligase in proper anaphase progression". The Journal of Biological Chemistry. 278 (25): 22828–37. doi:10.1074/jbc.M210358200. PMID 12676951. S2CID 33099674.
Paier A, Leppik M, Soosaar A, Tenson T, Maiväli Ü (January 2015). "The effects of disruptions in ribosomal active sites and in intersubunit contacts on ribosomal degradation in Escherichia coli". Scientific Reports. 5: 7712. Bibcode:2015NatSR...5E7712P. doi:10.1038/srep07712. PMC 4289901. PMID 25578614.
Ide S, Miyazaki T, Maki H, Kobayashi T (February 2010). "Abundance of ribosomal RNA gene copies maintains genome integrity". Science. 327 (5966): 693–6. Bibcode:2010Sci...327..693I. doi:10.1126/science.1179044. PMID 20133573. S2CID 206522454.
Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, et al. (January 2013). "The SILVA ribosomal RNA gene database project: improved data processing and web-based tools". Nucleic Acids Research. 41 (Database issue): D590-6. doi:10.1093/nar/gks1219. PMC 3531112. PMID 23193283.
Pruesse E, Peplies J, Glöckner FO (July 2012). "SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes". Bioinformatics. 28 (14): 1823–9. doi:10.1093/bioinformatics/bts252. PMC 3389763. PMID 22556368.
Wieland M, Berschneider B, Erlacher MD, Hartig JS (March 2010). "Aptazyme-mediated regulation of 16S ribosomal RNA". Chemistry & Biology. 17 (3): 236–42. doi:10.1016/j.chembiol.2010.02.012. PMID 20338515.
Borden JR, Jones SW, Indurthi D, Chen Y, Papoutsakis ET (May 2010). "A genomic-library based discovery of a novel, possibly synthetic, acid-tolerance mechanism in Clostridium acetobutylicum involving non-coding RNAs and ribosomal RNA processing". Metabolic Engineering. 12 (3): 268–81. doi:10.1016/j.ymben.2009.12.004. PMC 2857598. PMID 20060060.
Trauner A, Lougheed KE, Bennett MH, Hingley-Wilson SM, Williams HD (July 2012). "The dormancy regulator DosR controls ribosome stability in hypoxic mycobacteria". The Journal of Biological Chemistry. 287 (28): 24053–63. doi:10.1074/jbc.m112.364851. PMC 3390679. PMID 22544737.
Meyer A, Todt C, Mikkelsen NT, Lieb B (March 2010). "Fast evolving 18S rRNA sequences from Solenogastres (Mollusca) resist standard PCR amplification and give new insights into mollusk substitution rate heterogeneity". BMC Evolutionary Biology. 10 (1): 70. Bibcode:2010BMCEE..10...70M. doi:10.1186/1471-2148-10-70. PMC 2841657. PMID 20214780.
Cole JR, Chai B, Marsh TL, Farris RJ, Wang Q, Kulam SA, et al. (January 2003). "The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy". Nucleic Acids Research. 31 (1): 442–3. doi:10.1093/nar/gkg039. PMC 165486. PMID 12520046.
Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, Peplies J, Glöckner FO (2007). "SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB". Nucleic Acids Research. 35 (21): 7188–96. doi:10.1093/nar/gkm864. PMC 2175337. PMID 17947321.
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Long KS, Poehlsgaard J, Hansen LH, Hobbie SN, Böttger EC, Vester B (March 2009). "Single 23S rRNA mutations at the ribosomal peptidyl transferase centre confer resistance to valnemulin and other antibiotics in Mycobacterium smegmatis by perturbation of the drug binding pocket". Molecular Microbiology. 71 (5): 1218–27. doi:10.1111/j.1365-2958.2009.06596.x. PMID 19154331. S2CID 23728518.
Ju Son D (2013). "The atypical mechanosensitive microRNA-712 derived from pre-ribosomal RNA induces endothelial inflammation and atherosclerosis". Nature Communications. 4: 3000. Bibcode:2013NatCo...4.3000S. doi:10.1038/ncomms4000. PMC 3923891. PMID 24346612.

dx.doi.org

Shimada, T. (August 1992). "Distribution of split 5.8S ribosomal RNA in Diptera". Insect Molecular Biology. 1 (1): 45–48. doi:10.1111/j.1365-2583.1993.tb00076.x. ISSN 0962-1075. PMID 1343775. S2CID 46570307.

fasebj.org

Donovan, Bridget M.; Jarrell, Kelli L.; LaRiviere, Frederick J. (2011-04-01). "Investigating nonfunctional rRNA decay as a stress response in Saccharomyces cerevisiae". The FASEB Journal. 25 (1_supplement): 521.3. doi:10.1096/fasebj.25.1_supplement.521.3 (inactive 31 January 2024). ISSN 0892-6638.{{cite journal}}: CS1 maint: DOI inactive as of January 2024 (link)

fsu.edu

micro.magnet.fsu.edu

Davidson, Michael W. (13 November 2015). "Molecular Expressions Cell Biology: Ribosomes". Molecular Expressions. National High Magnetic Field Laboratory. Retrieved 2024-03-29.

handle.net

hdl.handle.net

Lafontaine DL, Tollervey D (July 2001). "The function and synthesis of ribosomes". Nature Reviews Molecular Cell Biology. 2 (7): 514–20. doi:10.1038/35080045. hdl:1842/729. PMID 11433365. S2CID 2637106.
Engel C, Sainsbury S, Cheung AC, Kostrewa D, Cramer P (October 2013). "RNA polymerase I structure and transcription regulation". Nature. 502 (7473): 650–5. Bibcode:2013Natur.502..650E. doi:10.1038/nature12712. hdl:11858/00-001M-0000-0015-3B48-5. PMID 24153182. S2CID 205236187.

harvard.edu

ui.adsabs.harvard.edu

Luehrsen, KR.; Nicholson, DE; Eubanks, DC; Fox, GE (May 1981). "An archaebacterial 5S rRNA contains a long insertion sequence". Nature. 293 (5835): 755–756. Bibcode:1981Natur.293..755L. doi:10.1038/293755a0. PMID 6169998. S2CID 4341755.
Woese CR, Fox GE (November 1977). "Phylogenetic structure of the prokaryotic domain: the primary kingdoms". Proc. Natl. Acad. Sci. USA. 74 (11): 5088–5090. Bibcode:1977PNAS...74.5088W. doi:10.1073/pnas.74.11.5088. PMC 432104. PMID 270744.
Moore PB, Steitz TA (July 2002). "The involvement of RNA in ribosome function". Nature. 418 (6894): 229–35. Bibcode:2002Natur.418..229M. doi:10.1038/418229a. PMID 12110899. S2CID 4324362.
Parks MM, Kurylo CM, Dass RA, Bojmar L, Lyden D, Vincent CT, Blanchard SC (February 2018). "Variant ribosomal RNA alleles are conserved and exhibit tissue-specific expression". Science Advances. 4 (2): eaao0665. Bibcode:2018SciA....4..665P. doi:10.1126/sciadv.aao0665. PMC 5829973. PMID 29503865.
Yusupov MM, Yusupova GZ, Baucom A, Lieberman K, Earnest TN, Cate JH, Noller HF (May 2001). "Crystal structure of the ribosome at 5.5 A resolution". Science. 292 (5518): 883–96. Bibcode:2001Sci...292..883Y. doi:10.1126/science.1060089. PMID 11283358. S2CID 39505192.
Fernández-Tornero C, Moreno-Morcillo M, Rashid UJ, Taylor NM, Ruiz FM, Gruene T, et al. (October 2013). "Crystal structure of the 14-subunit RNA polymerase I". Nature. 502 (7473): 644–9. Bibcode:2013Natur.502..644F. doi:10.1038/nature12636. PMID 24153184. S2CID 205235881.
Engel C, Sainsbury S, Cheung AC, Kostrewa D, Cramer P (October 2013). "RNA polymerase I structure and transcription regulation". Nature. 502 (7473): 650–5. Bibcode:2013Natur.502..650E. doi:10.1038/nature12712. hdl:11858/00-001M-0000-0015-3B48-5. PMID 24153182. S2CID 205236187.
Thompson M, Haeusler RA, Good PD, Engelke DR (November 2003). "Nucleolar clustering of dispersed tRNA genes". Science. 302 (5649): 1399–401. Bibcode:2003Sci...302.1399T. doi:10.1126/science.1089814. PMC 3783965. PMID 14631041.
Hoppe S, Bierhoff H, Cado I, Weber A, Tiebe M, Grummt I, Voit R (October 2009). "AMP-activated protein kinase adapts rRNA synthesis to cellular energy supply". Proceedings of the National Academy of Sciences of the United States of America. 106 (42): 17781–6. Bibcode:2009PNAS..10617781H. doi:10.1073/pnas.0909873106. PMC 2764937. PMID 19815529.
Gaal T, Bartlett MS, Ross W, Turnbough CL, Gourse RL (December 1997). "Transcription regulation by initiating NTP concentration: rRNA synthesis in bacteria". Science. 278 (5346): 2092–7. Bibcode:1997Sci...278.2092G. doi:10.1126/science.278.5346.2092. PMID 9405339.
Maeda M, Shimada T, Ishihama A (2015-12-30). "Strength and Regulation of Seven rRNA Promoters in Escherichia coli". PLOS ONE. 10 (12): e0144697. Bibcode:2015PLoSO..1044697M. doi:10.1371/journal.pone.0144697. PMC 4696680. PMID 26717514.
Paier A, Leppik M, Soosaar A, Tenson T, Maiväli Ü (January 2015). "The effects of disruptions in ribosomal active sites and in intersubunit contacts on ribosomal degradation in Escherichia coli". Scientific Reports. 5: 7712. Bibcode:2015NatSR...5E7712P. doi:10.1038/srep07712. PMC 4289901. PMID 25578614.
Ide S, Miyazaki T, Maki H, Kobayashi T (February 2010). "Abundance of ribosomal RNA gene copies maintains genome integrity". Science. 327 (5966): 693–6. Bibcode:2010Sci...327..693I. doi:10.1126/science.1179044. PMID 20133573. S2CID 206522454.
Meyer A, Todt C, Mikkelsen NT, Lieb B (March 2010). "Fast evolving 18S rRNA sequences from Solenogastres (Mollusca) resist standard PCR amplification and give new insights into mollusk substitution rate heterogeneity". BMC Evolutionary Biology. 10 (1): 70. Bibcode:2010BMCEE..10...70M. doi:10.1186/1471-2148-10-70. PMC 2841657. PMID 20214780.
Ju Son D (2013). "The atypical mechanosensitive microRNA-712 derived from pre-ribosomal RNA induces endothelial inflammation and atherosclerosis". Nature Communications. 4: 3000. Bibcode:2013NatCo...4.3000S. doi:10.1038/ncomms4000. PMC 3923891. PMID 24346612.

nih.gov

pubmed.ncbi.nlm.nih.gov

Urlaub H, Kruft V, Bischof O, Müller EC, Wittmann-Liebold B (September 1995). "Protein-rRNA binding features and their structural and functional implications in ribosomes as determined by cross-linking studies". The EMBO Journal. 14 (18): 4578–88. doi:10.1002/j.1460-2075.1995.tb00137.x. PMC 394550. PMID 7556101.
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Shimada, T. (August 1992). "Distribution of split 5.8S ribosomal RNA in Diptera". Insect Molecular Biology. 1 (1): 45–48. doi:10.1111/j.1365-2583.1993.tb00076.x. ISSN 0962-1075. PMID 1343775. S2CID 46570307.
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