Scaffolding (bioinformatics) (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Scaffolding (bioinformatics)" in English language version.

refsWebsite

Global rank English rank

21nih.gov

4^th place

11doi.org

2^nd place

4worldcat.org

5^th place

2harvard.edu

18^th place

17^th place

1bioontology.org

low place

1frontiersin.org

4,679^th place

low place

1jstor.org

26^th place

20^th place

bioontology.org

bioportal.bioontology.org

"EDAM Ontology of Bioinformatics Operations and Data Formats".

doi.org

Waterston, Robert (2002). "On the Sequencing of the Human Genome". Proceedings of the National Academy of Sciences of the United States of America. 99 (6): 3712–3716. Bibcode:2002PNAS...99.3712W. doi:10.1073/pnas.042692499. PMC 122589. PMID 11880605.
Flot, Jean-François; Marie-Nelly, Hervé; Koszul, Romain (2015-10-07). "Contact genomics: scaffolding and phasing (meta)genomes using chromosome 3D physical signatures". FEBS Letters. 589 (20 Pt A): 2966–2974. doi:10.1016/j.febslet.2015.04.034. ISSN 1873-3468. PMID 25935414.
Pop, Mihai; Kosack, Daniel S.; Salzberg, Steven L. (2004-01-01). "Hierarchical Scaffolding With Bambus". Genome Research. 14 (1): 149–159. doi:10.1101/gr.1536204. ISSN 1088-9051. PMC 314292. PMID 14707177.
Hunt, M; Newbold, C; Berriman, M; Otto, TD (2014). "A comprehensive evaluation of assembly scaffolding tools". Genome Biology. 15 (3): R42. doi:10.1186/gb-2014-15-3-r42. PMC 4053845. PMID 24581555.
Tang, H; Zhang, X; Miao, C; et al. (2015). "ALLMAPS: robust scaffold ordering based on multiple maps". Genome Biology. 16 (1): 3. doi:10.1186/s13059-014-0573-1. PMC 4305236. PMID 25583564.
Boetzer, M; Pirovano, W (2012). "Toward almost closed genomes with GapFiller". Genome Biology. 13 (6): R56. doi:10.1186/gb-2012-13-6-r56. PMC 3446322. PMID 22731987.
Utturkar, SM; Klingeman, DM; Land, ML; et al. (2014). "Evaluation and validation of de novo and hybrid assembly techniques to derive high-quality genome sequences". Bioinformatics. 30 (19): 2709–2716. doi:10.1093/bioinformatics/btu391. PMC 4173024. PMID 24930142.
Li, Ruiqiang; Zhu, Hongmei; Ruan, Jue; Qian, Wubin; Fang, Xiaodong; Shi, Zhongbin; Li, Yingrui; Li, Shengting; Shan, Gao (2017-02-09). "De novo assembly of human genomes with massively parallel short read sequencing". Genome Research. 20 (2): 265–272. doi:10.1101/gr.097261.109. ISSN 1088-9051. PMC 2813482. PMID 20019144.
Pareek, Chandra Shekhar; Smoczynski, Rafal; Tretyn, Andrzej (2017-02-09). "Sequencing technologies and genome sequencing". Journal of Applied Genetics. 52 (4): 413–435. doi:10.1007/s13353-011-0057-x. ISSN 1234-1983. PMC 3189340. PMID 21698376.
Goldberg, Susanne M. D.; et al. (2006). "A Sanger/Pyrosequencing Hybrid Approach for the Generation of High-Quality Draft Assemblies of Marine Microbial Genomes". Proceedings of the National Academy of Sciences of the United States of America. 103 (30): 11240–11245. Bibcode:2006PNAS..10311240G. doi:10.1073/pnas.0604351103. JSTOR 30049789. PMC 1544072. PMID 16840556.
Chaisson, Mark; Wilson, Richard; Eichler, Evan (7 October 2015). "Genetic variation and the de novo assembly of human genomes". Nature Reviews Genetics. 16 (11): 627–640. doi:10.1038/nrg3933. PMC 4745987. PMID 26442640.

frontiersin.org

journal.frontiersin.org

Fierst JL (2015) Using linkage maps to correct and scaffold de novo genome assemblies: methods, challenges, and computational tools. In: Frontiers in Genetics. http://journal.frontiersin.org/article/10.3389/fgene.2015.00220/full . Accessed 7 Apr 2017

harvard.edu

ui.adsabs.harvard.edu

Waterston, Robert (2002). "On the Sequencing of the Human Genome". Proceedings of the National Academy of Sciences of the United States of America. 99 (6): 3712–3716. Bibcode:2002PNAS...99.3712W. doi:10.1073/pnas.042692499. PMC 122589. PMID 11880605.
Goldberg, Susanne M. D.; et al. (2006). "A Sanger/Pyrosequencing Hybrid Approach for the Generation of High-Quality Draft Assemblies of Marine Microbial Genomes". Proceedings of the National Academy of Sciences of the United States of America. 103 (30): 11240–11245. Bibcode:2006PNAS..10311240G. doi:10.1073/pnas.0604351103. JSTOR 30049789. PMC 1544072. PMID 16840556.

jstor.org

Goldberg, Susanne M. D.; et al. (2006). "A Sanger/Pyrosequencing Hybrid Approach for the Generation of High-Quality Draft Assemblies of Marine Microbial Genomes". Proceedings of the National Academy of Sciences of the United States of America. 103 (30): 11240–11245. Bibcode:2006PNAS..10311240G. doi:10.1073/pnas.0604351103. JSTOR 30049789. PMC 1544072. PMID 16840556.

nih.gov

pubmed.ncbi.nlm.nih.gov

Waterston, Robert (2002). "On the Sequencing of the Human Genome". Proceedings of the National Academy of Sciences of the United States of America. 99 (6): 3712–3716. Bibcode:2002PNAS...99.3712W. doi:10.1073/pnas.042692499. PMC 122589. PMID 11880605.
Flot, Jean-François; Marie-Nelly, Hervé; Koszul, Romain (2015-10-07). "Contact genomics: scaffolding and phasing (meta)genomes using chromosome 3D physical signatures". FEBS Letters. 589 (20 Pt A): 2966–2974. doi:10.1016/j.febslet.2015.04.034. ISSN 1873-3468. PMID 25935414.
Pop, Mihai; Kosack, Daniel S.; Salzberg, Steven L. (2004-01-01). "Hierarchical Scaffolding With Bambus". Genome Research. 14 (1): 149–159. doi:10.1101/gr.1536204. ISSN 1088-9051. PMC 314292. PMID 14707177.
Hunt, M; Newbold, C; Berriman, M; Otto, TD (2014). "A comprehensive evaluation of assembly scaffolding tools". Genome Biology. 15 (3): R42. doi:10.1186/gb-2014-15-3-r42. PMC 4053845. PMID 24581555.
Tang, H; Zhang, X; Miao, C; et al. (2015). "ALLMAPS: robust scaffold ordering based on multiple maps". Genome Biology. 16 (1): 3. doi:10.1186/s13059-014-0573-1. PMC 4305236. PMID 25583564.
Boetzer, M; Pirovano, W (2012). "Toward almost closed genomes with GapFiller". Genome Biology. 13 (6): R56. doi:10.1186/gb-2012-13-6-r56. PMC 3446322. PMID 22731987.
Utturkar, SM; Klingeman, DM; Land, ML; et al. (2014). "Evaluation and validation of de novo and hybrid assembly techniques to derive high-quality genome sequences". Bioinformatics. 30 (19): 2709–2716. doi:10.1093/bioinformatics/btu391. PMC 4173024. PMID 24930142.
Li, Ruiqiang; Zhu, Hongmei; Ruan, Jue; Qian, Wubin; Fang, Xiaodong; Shi, Zhongbin; Li, Yingrui; Li, Shengting; Shan, Gao (2017-02-09). "De novo assembly of human genomes with massively parallel short read sequencing". Genome Research. 20 (2): 265–272. doi:10.1101/gr.097261.109. ISSN 1088-9051. PMC 2813482. PMID 20019144.
Pareek, Chandra Shekhar; Smoczynski, Rafal; Tretyn, Andrzej (2017-02-09). "Sequencing technologies and genome sequencing". Journal of Applied Genetics. 52 (4): 413–435. doi:10.1007/s13353-011-0057-x. ISSN 1234-1983. PMC 3189340. PMID 21698376.
Goldberg, Susanne M. D.; et al. (2006). "A Sanger/Pyrosequencing Hybrid Approach for the Generation of High-Quality Draft Assemblies of Marine Microbial Genomes". Proceedings of the National Academy of Sciences of the United States of America. 103 (30): 11240–11245. Bibcode:2006PNAS..10311240G. doi:10.1073/pnas.0604351103. JSTOR 30049789. PMC 1544072. PMID 16840556.
Chaisson, Mark; Wilson, Richard; Eichler, Evan (7 October 2015). "Genetic variation and the de novo assembly of human genomes". Nature Reviews Genetics. 16 (11): 627–640. doi:10.1038/nrg3933. PMC 4745987. PMID 26442640.

ncbi.nlm.nih.gov

Waterston, Robert (2002). "On the Sequencing of the Human Genome". Proceedings of the National Academy of Sciences of the United States of America. 99 (6): 3712–3716. Bibcode:2002PNAS...99.3712W. doi:10.1073/pnas.042692499. PMC 122589. PMID 11880605.
Pop, Mihai; Kosack, Daniel S.; Salzberg, Steven L. (2004-01-01). "Hierarchical Scaffolding With Bambus". Genome Research. 14 (1): 149–159. doi:10.1101/gr.1536204. ISSN 1088-9051. PMC 314292. PMID 14707177.
Hunt, M; Newbold, C; Berriman, M; Otto, TD (2014). "A comprehensive evaluation of assembly scaffolding tools". Genome Biology. 15 (3): R42. doi:10.1186/gb-2014-15-3-r42. PMC 4053845. PMID 24581555.
Tang, H; Zhang, X; Miao, C; et al. (2015). "ALLMAPS: robust scaffold ordering based on multiple maps". Genome Biology. 16 (1): 3. doi:10.1186/s13059-014-0573-1. PMC 4305236. PMID 25583564.
Boetzer, M; Pirovano, W (2012). "Toward almost closed genomes with GapFiller". Genome Biology. 13 (6): R56. doi:10.1186/gb-2012-13-6-r56. PMC 3446322. PMID 22731987.
Utturkar, SM; Klingeman, DM; Land, ML; et al. (2014). "Evaluation and validation of de novo and hybrid assembly techniques to derive high-quality genome sequences". Bioinformatics. 30 (19): 2709–2716. doi:10.1093/bioinformatics/btu391. PMC 4173024. PMID 24930142.
Li, Ruiqiang; Zhu, Hongmei; Ruan, Jue; Qian, Wubin; Fang, Xiaodong; Shi, Zhongbin; Li, Yingrui; Li, Shengting; Shan, Gao (2017-02-09). "De novo assembly of human genomes with massively parallel short read sequencing". Genome Research. 20 (2): 265–272. doi:10.1101/gr.097261.109. ISSN 1088-9051. PMC 2813482. PMID 20019144.
Pareek, Chandra Shekhar; Smoczynski, Rafal; Tretyn, Andrzej (2017-02-09). "Sequencing technologies and genome sequencing". Journal of Applied Genetics. 52 (4): 413–435. doi:10.1007/s13353-011-0057-x. ISSN 1234-1983. PMC 3189340. PMID 21698376.
Goldberg, Susanne M. D.; et al. (2006). "A Sanger/Pyrosequencing Hybrid Approach for the Generation of High-Quality Draft Assemblies of Marine Microbial Genomes". Proceedings of the National Academy of Sciences of the United States of America. 103 (30): 11240–11245. Bibcode:2006PNAS..10311240G. doi:10.1073/pnas.0604351103. JSTOR 30049789. PMC 1544072. PMID 16840556.
Chaisson, Mark; Wilson, Richard; Eichler, Evan (7 October 2015). "Genetic variation and the de novo assembly of human genomes". Nature Reviews Genetics. 16 (11): 627–640. doi:10.1038/nrg3933. PMC 4745987. PMID 26442640.

worldcat.org

search.worldcat.org

Flot, Jean-François; Marie-Nelly, Hervé; Koszul, Romain (2015-10-07). "Contact genomics: scaffolding and phasing (meta)genomes using chromosome 3D physical signatures". FEBS Letters. 589 (20 Pt A): 2966–2974. doi:10.1016/j.febslet.2015.04.034. ISSN 1873-3468. PMID 25935414.
Pop, Mihai; Kosack, Daniel S.; Salzberg, Steven L. (2004-01-01). "Hierarchical Scaffolding With Bambus". Genome Research. 14 (1): 149–159. doi:10.1101/gr.1536204. ISSN 1088-9051. PMC 314292. PMID 14707177.
Li, Ruiqiang; Zhu, Hongmei; Ruan, Jue; Qian, Wubin; Fang, Xiaodong; Shi, Zhongbin; Li, Yingrui; Li, Shengting; Shan, Gao (2017-02-09). "De novo assembly of human genomes with massively parallel short read sequencing". Genome Research. 20 (2): 265–272. doi:10.1101/gr.097261.109. ISSN 1088-9051. PMC 2813482. PMID 20019144.
Pareek, Chandra Shekhar; Smoczynski, Rafal; Tretyn, Andrzej (2017-02-09). "Sequencing technologies and genome sequencing". Journal of Applied Genetics. 52 (4): 413–435. doi:10.1007/s13353-011-0057-x. ISSN 1234-1983. PMC 3189340. PMID 21698376.