Sequence alignment (English Wikipedia)

Polyanovsky, V. O.; Roytberg, M. A.; Tumanyan, V. G. (2011). "Comparative analysis of the quality of a global algorithm and a local algorithm for alignment of two sequences". Algorithms for Molecular Biology. 6 (1): 25. doi:10.1186/1748-7188-6-25. PMC 3223492. PMID 22032267. S2CID 2658261.
Notredame C; Higgins DG; Heringa J. (2000). "T-Coffee: A novel method for fast and accurate multiple sequence alignment". J Mol Biol. 302 (1): 205–17. doi:10.1006/jmbi.2000.4042. PMID 10964570. S2CID 10189971.
Holm L; Sander C (1996). "Mapping the protein universe". Science. 273 (5275): 595–603. Bibcode:1996Sci...273..595H. doi:10.1126/science.273.5275.595. PMID 8662544. S2CID 7509134.
Hartmann AK (2002). "Sampling rare events: statistics of local sequence alignments". Phys. Rev. E. 65 (5) 056102. arXiv:cond-mat/0108201. Bibcode:2002PhRvE..65e6102H. doi:10.1103/PhysRevE.65.056102. PMID 12059642. S2CID 193085.
Eddy SR; Rost, Burkhard (2008). Rost, Burkhard (ed.). "A probabilistic model of local sequence alignment that simplifies statistical significance estimation". PLOS Comput Biol. 4 (5) e1000069. Bibcode:2008PLSCB...4E0069E. doi:10.1371/journal.pcbi.1000069. PMC 2396288. PMID 18516236. S2CID 15640896.
Agrawal A; Huang X (2011). "Pairwise Statistical Significance of Local Sequence Alignment Using Sequence-Specific and Position-Specific Substitution Matrices". IEEE/ACM Transactions on Computational Biology and Bioinformatics. 8 (1): 194–205. Bibcode:2011ITCBB...8..194A. doi:10.1109/TCBB.2009.69. PMID 21071807. S2CID 6559731.
Li JB, Levanon EY, Yoon JK, et al. (May 2009). "Genome-wide identification of human RNA editing sites by parallel DNA capturing and sequencing". Science. 324 (5931): 1210–3. Bibcode:2009Sci...324.1210L. doi:10.1126/science.1170995. PMID 19478186. S2CID 31148824.
Abbott A.; Tsay A. (2000). "Sequence Analysis and Optimal Matching Methods in Sociology, Review and Prospect". Sociological Methods and Research. 29 (1): 3–33. doi:10.1177/0049124100029001001. S2CID 121097811.
Barzilay R; Lee L. (2002). "Bootstrapping lexical choice via multiple-sequence alignment" (PDF). Proceedings of the ACL-02 conference on Empirical methods in natural language processing - EMNLP '02. Vol. 10. pp. 164–171. arXiv:cs/0205065. Bibcode:2002cs........5065B. doi:10.3115/1118693.1118715. S2CID 7521453.

ualberta.ca (Global: 3,255^th place; English: 2,085^th place)

cs.ualberta.ca

Kondrak, Grzegorz (2002). Algorithms for Language Reconstruction (PDF) (Thesis). University of Toronto. Archived from the original (PDF) on 17 December 2008. Retrieved 21 January 2007.

uwa.edu.au (Global: 5,877^th place; English: 3,780^th place)

admin.research-repository.uwa.edu.au

Duran C; Appleby N; Vardy M; Imelfort M; Edwards D; Batley J (May 2009). "Single nucleotide polymorphism discovery in barley using autoSNPdb". Plant Biotechnol. J. 7 (4): 326–33. Bibcode:2009PBioJ...7..326D. doi:10.1111/j.1467-7652.2009.00407.x. PMID 19386041.

virginia.edu (Global: 1,203^rd place; English: 734^th place)

fasta.bioch.virginia.edu

"UVA FASTA Server". fasta.bioch.Virginia.edu. Retrieved 12 June 2017.

web.archive.org (Global: 1^st place; English: 1^st place)

"Clustal FAQ #Symbols". Clustal. Archived from the original on 24 October 2016. Retrieved 8 December 2014.
READSEQ
Kondrak, Grzegorz (2002). Algorithms for Language Reconstruction (PDF) (Thesis). University of Toronto. Archived from the original (PDF) on 17 December 2008. Retrieved 21 January 2007.
T-coffee
BAliBASE

worldcat.org (Global: 4^th place; English: 4^th place)

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Gotoh, Osamu (15 December 1982). "An improved algorithm for matching biological sequences". Journal of Molecular Biology. 162 (3): 705–708. Bibcode:1982JMBio.162..705G. doi:10.1016/0022-2836(82)90398-9. ISSN 0022-2836. PMID 7166760.
Gotoh, Osamu (1 January 1999). "Multiple sequence alignment: Algorithms and applications". Advances in Biophysics. 36: 159–206. doi:10.1016/S0065-227X(99)80007-0. ISSN 0065-227X. PMID 10463075.

Sequence alignment (English Wikipedia)

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doi.org (Global: 2^nd place; English: 2^nd place)

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