Sequence analysis (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Sequence analysis" in English language version.

Last modified: 13:20:26, 4 October 2025 (UTC)

Ref.Un. Ref.Website

Global rank English rank

6454nih.gov

5^th place

4935doi.org

2^nd place

118adsabs.harvard.edu

14^th place

9^th place

77semanticscholar.org

15^th place

8^th place

32galaxyproject.org

low place

11cambridge.org

209^th place

151^st place

11worldcat.org

4^th place

11hdl.handle.net

66^th place

34^th place

11nf-co.re

low place

adsabs.harvard.edu (Global: 14^th place; English: 9^th place)

ui.adsabs.harvard.edu

Sanger, F; Nicklen, S; Coulson, AR (December 1977). "DNA sequencing with chain-terminating inhibitors". Proc Natl Acad Sci U S A. 74 (12): 441–448. Bibcode:1977PNAS...74.5463S. doi:10.1073/pnas.74.12.5463. PMC 431765. PMID 271968.
Sanger, F; Air, GM; Barrell, BG; Brown, NL; Coulson, AR; Fiddes, CA; Hutchison, CA; Slocombe, PM; Smith, M (February 1977). "Nucleotide sequence of bacteriophage phi X174 DNA". Nature. 265 (5596): 687–695. Bibcode:1977Natur.265..687S. doi:10.1038/265687a0. PMID 870828. S2CID 4206886.
Levitt M (November 1969). "Detailed molecular model for transfer ribonucleic acid". Nature. 224 (5221): 759–63. Bibcode:1969Natur.224..759L. doi:10.1038/224759a0. PMID 5361649. S2CID 983981.
Sanger F, Air GM, Barrell BG, et al. (February 1977). "Nucleotide sequence of bacteriophage phi X174 DNA". Nature. 265 (5596): 687–95. Bibcode:1977Natur.265..687S. doi:10.1038/265687a0. PMID 870828. S2CID 4206886.
Holley, RW; Apgar, J; Everett, GA; Madison, JT; Marquisee, M; Merrill, SH; Penswick, JR; Zamir, A (May 1965). "Structure of a Ribonucleic Acid". Science. 147 (3664): 1462–1465. Bibcode:1965Sci...147.1462H. doi:10.1126/science.147.3664.1462. PMID 14263761. S2CID 40989800.
Hiltemann, Saskia; Rasche, Helena; et al. (January 2023). "Galaxy Training: A Powerful Framework for Teaching!". PLOS Computational Biology. 19 (1) e1010752. Bibcode:2023PLSCB..19E0752H. doi:10.1371/journal.pcbi.1010752. PMC 9829167. PMID 36622853.
Gribskov M; McLachlan AD; Eisenberg D (July 1987). "Profile analysis: detection of distantly related proteins". Proc. Natl. Acad. Sci. U.S.A. 84 (13): 4355–8. Bibcode:1987PNAS...84.4355G. doi:10.1073/pnas.84.13.4355. PMC 305087. PMID 3474607.
Wooley, JC; Godzik, A; Friedberg, I (Feb 26, 2010). "A primer on metagenomics". PLOS Comput Biol. 6 (2) e1000667. Bibcode:2010PLSCB...6E0667W. doi:10.1371/journal.pcbi.1000667. PMC 2829047. PMID 20195499.

cambridge.org (Global: 209^th place; English: 151^st place)

Durbin, Richard M.; Eddy, Sean R.; Krogh, Anders; Mitchison, Graeme (1998), Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids (1st ed.), Cambridge, New York: Cambridge University Press, ISBN 0-521-62971-3, OCLC 593254083

doi.org (Global: 2^nd place; English: 2^nd place)

Sanger F; Tuppy H (September 1951). "The amino-acid sequence in the phenylalanyl chain of insulin. I. The identification of lower peptides from partial hydrolysates". Biochem. J. 49 (4): 463–81. doi:10.1042/bj0490463. PMC 1197535. PMID 14886310.
SANGER F; TUPPY H (September 1951). "The amino-acid sequence in the phenylalanyl chain of insulin. 2. The investigation of peptides from enzymic hydrolysates". Biochem. J. 49 (4): 481–90. doi:10.1042/bj0490481. PMC 1197536. PMID 14886311.
Sanger, F; Nicklen, S; Coulson, AR (December 1977). "DNA sequencing with chain-terminating inhibitors". Proc Natl Acad Sci U S A. 74 (12): 441–448. Bibcode:1977PNAS...74.5463S. doi:10.1073/pnas.74.12.5463. PMC 431765. PMID 271968.
Sanger, F; Air, GM; Barrell, BG; Brown, NL; Coulson, AR; Fiddes, CA; Hutchison, CA; Slocombe, PM; Smith, M (February 1977). "Nucleotide sequence of bacteriophage phi X174 DNA". Nature. 265 (5596): 687–695. Bibcode:1977Natur.265..687S. doi:10.1038/265687a0. PMID 870828. S2CID 4206886.
Levitt M (May 2001). "The birth of computational structural biology". Nature Structural & Molecular Biology. 8 (5): 392–3. doi:10.1038/87545. PMID 11323711. S2CID 6519868.
Levitt M (November 1969). "Detailed molecular model for transfer ribonucleic acid". Nature. 224 (5221): 759–63. Bibcode:1969Natur.224..759L. doi:10.1038/224759a0. PMID 5361649. S2CID 983981.
Needleman SB; Wunsch CD (March 1970). "A general method applicable to the search for similarities in the amino acid sequence of two proteins". J. Mol. Biol. 48 (3): 443–53. doi:10.1016/0022-2836(70)90057-4. PMID 5420325.
Sanger F, Air GM, Barrell BG, et al. (February 1977). "Nucleotide sequence of bacteriophage phi X174 DNA". Nature. 265 (5596): 687–95. Bibcode:1977Natur.265..687S. doi:10.1038/265687a0. PMID 870828. S2CID 4206886.
Holley, RW; Apgar, J; Everett, GA; Madison, JT; Marquisee, M; Merrill, SH; Penswick, JR; Zamir, A (May 1965). "Structure of a Ribonucleic Acid". Science. 147 (3664): 1462–1465. Bibcode:1965Sci...147.1462H. doi:10.1126/science.147.3664.1462. PMID 14263761. S2CID 40989800.
Hiltemann, Saskia; Rasche, Helena; et al. (January 2023). "Galaxy Training: A Powerful Framework for Teaching!". PLOS Computational Biology. 19 (1) e1010752. Bibcode:2023PLSCB..19E0752H. doi:10.1371/journal.pcbi.1010752. PMC 9829167. PMID 36622853.
Batut, Bérénice; et al. (2018). "Community-Driven Data Analysis Training for Biology". Cell Systems. 6 (6): 752–758.e1. doi:10.1016/j.cels.2018.05.012. PMC 6296361. PMID 29953864.
Prijibelski, Andrey B.; Korobeynikov, Anton I.; Lapidus, Alla L. (September 2018). "Sequence Analysis". Encyclopedia of Bioinformatics and Computational Biology. Vol. 3. pp. 292–322. doi:10.1016/B978-0-12-809633-8.20106-4. ISBN 978-0-12-811432-2.
Bolger, Anthony M.; Lohse, Marc; Usadel, Bjoern (April 2014). "Trimmomatic: a flexible trimmer for Illumina sequence data". Bioinformatics. 30 (15): 2114–2120. doi:10.1093/bioinformatics/btu170. PMC 4103590. PMID 24695404.
Marcel, Martin (2011). "Cutadapt removes adapter sequences from high-throughput sequencing reads". EMBnet.journal. 17: 10. doi:10.14806/ej.17.1.200.
Li, Heng; Durbin, Richard (July 2009). "Fast and accurate short read alignment with Burrows–Wheeler transform". Bioinformatics. 25 (14): 1754–1760. doi:10.1093/bioinformatics/btp324. PMC 2705234. PMID 19451168.
Li, Heng (March 2016). "Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences". Bioinformatics. 32 (14): 2103–2110. doi:10.1093/bioinformatics/btw152. PMC 4937194. PMID 27153593.
Dobin, Alexander; Davis, Carrie A.; et al. (October 2012). "STAR: ultrafast universal RNA-seq aligner". Bioinformatics. 29 (1): 15–21. doi:10.1093/bioinformatics/bts635. PMC 3530905. PMID 23104886.
McKenna, Aaron; Hanna, Matthew; et al. (July 2010). "The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data". Genome Research. 20 (9): 1297–1303. doi:10.1101/gr.107524.110. PMC 2928508. PMID 20644199.
Poplin, R; Chang, PC; et al. (September 2018). "A universal SNP and small-indel variant caller using deep neural networks". Nature Biotechnology. 36 (10): 983–987. doi:10.1038/nbt.4235. PMID 30247488.
Sedlazeck, F.J.; Rescheneder, P; et al. (April 2018). "Accurate detection of complex structural variations using single-molecule sequencing". Nature Methods. 15 (6): 461–468. doi:10.1038/s41592-018-0001-7. PMC 5990442. PMID 29713083.
Cingolani, P; Platts, A; et al. (April 2012). "A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff". Fly. 6 (2): 80–92. doi:10.4161/fly.19695. PMC 3679285. PMID 22728672.
Anders, Simon; Pyl, Paul Theodore; Huber, Wolfgang (January 2015). "HTSeq—a Python framework to work with high-throughput sequencing data". Bioinformatics. 31 (2): 166–169. doi:10.1093/bioinformatics/btu638. PMC 4287950. PMID 25260700.
Love, M.I.; Huber, W.; Anders, S. (December 2014). "Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2". Genome Biology. 15 (12): 550. doi:10.1186/s13059-014-0550-8. PMC 4302049. PMID 25516281.
Young, M.D.; Wakefield, M.J; et al. (February 2010). "Gene ontology analysis for RNA-seq: accounting for selection bias". Genome Biology. 11 (2): R14. doi:10.1186/gb-2010-11-2-r14. hdl:11343/56416. PMC 2872874. PMID 20132535.
Luo, Weijun; Brouwer, Cory (June 2013). "Pathview: an R/Bioconductor package for pathway-based data integration and visualization". Bioinformatics. 29 (14): 1830–1831. doi:10.1093/bioinformatics/btt285. PMC 3702256. PMID 23740750.
Wang, Jun; Kong, Lei; et al. (July 2012). "A brief introduction to web-based genome browsers". Briefings in Bioinformatics. 14 (2): 131–143. doi:10.1093/bib/bbs029. PMID 22764121.
Pevsner, J. (February 2009). "Analysis of Genomic DNA with the UCSC Genome Browser". Bioinformatics for DNA Sequence Analysis. Methods in Molecular Biology. Vol. 537. Humana Press. pp. 277–301. doi:10.1007/978-1-59745-251-9_14. ISBN 978-1-59745-251-9. PMID 19378150.
Gribskov M; McLachlan AD; Eisenberg D (July 1987). "Profile analysis: detection of distantly related proteins". Proc. Natl. Acad. Sci. U.S.A. 84 (13): 4355–8. Bibcode:1987PNAS...84.4355G. doi:10.1073/pnas.84.13.4355. PMC 305087. PMID 3474607.
Krogh A; Brown M; Mian IS; Sjölander K; Haussler D (February 1994). "Hidden Markov models in computational biology. Applications to protein modeling". J. Mol. Biol. 235 (5): 1501–31. doi:10.1006/jmbi.1994.1104. PMID 8107089. S2CID 2160404.
Ye X; Wang G; Altschul SF (December 2011). "An assessment of substitution scores for protein profile-profile comparison". Bioinformatics. 27 (24): 3356–63. doi:10.1093/bioinformatics/btr565. PMC 3232366. PMID 21998158.
Wooley, JC; Godzik, A; Friedberg, I (Feb 26, 2010). "A primer on metagenomics". PLOS Comput Biol. 6 (2) e1000667. Bibcode:2010PLSCB...6E0667W. doi:10.1371/journal.pcbi.1000667. PMC 2829047. PMID 20195499.
Stanke, M; Waack, S (Oct 19, 2003). "Gene prediction with a hidden Markov model and a new intron submodel". Bioinformatics. 19 Suppl 2 (2): 215–25. doi:10.1093/bioinformatics/btg1080. PMID 14534192.
Alipanahi, B; Delong, A; Weirauch, MT; Frey, BJ (Aug 2015). "Predicting the sequence specificities of DNA- and RNA-binding proteins by deep learning". Nat Biotechnol. 33 (8): 831–8. doi:10.1038/nbt.3300. PMID 26213851.
Abe, N; Dror, I; Yang, L; Slattery, M; Zhou, T; Bussemaker, HJ; Rohs R, R; Mann, RS (Apr 9, 2015). "Deconvolving the recognition of DNA shape from sequence". Cell. 161 (2): 307–18. doi:10.1016/j.cell.2015.02.008. PMC 4422406. PMID 25843630.
Moult J; Hubbard T; Bryant SH; Fidelis K; Pedersen JT (1997). "Critical assessment of methods of protein structure prediction (CASP): round II". Proteins. Suppl 1 (S1): 2–6. doi:10.1002/(SICI)1097-0134(1997)1+<2::AID-PROT2>3.0.CO;2-T. PMID 9485489. S2CID 26823924.

galaxyproject.org (Global: low place; English: low place)

training.galaxyproject.org

Batut, Bérénice; Doyle, Maria; Cormier, Alexandre; Bretaudeau, Anthony; Leroi, Laura; Corre, Erwan; Robin, Stéphanie; nil, gallantries; Hyde, Cameron (3 November 2023). "Quality Control (Galaxy Training Materials)". Galaxy Training!. Retrieved 26 April 2024.
Batut, Bérénice; Freeberg, Mallory; et al. (17 March 2024). "Reference-based RNA-Seq data analysis (Galaxy Training Materials)". Galaxy Training!. Retrieved 26 April 2024.

hdl.handle.net (Global: 66^th place; English: 34^th place)

Young, M.D.; Wakefield, M.J; et al. (February 2010). "Gene ontology analysis for RNA-seq: accounting for selection bias". Genome Biology. 11 (2): R14. doi:10.1186/gb-2010-11-2-r14. hdl:11343/56416. PMC 2872874. PMID 20132535.

nf-co.re (Global: low place; English: low place)

"Quantitative mass spectrometry workflow". nf-core.

nih.gov (Global: 5^th place; English: 5^th place)

pubmed.ncbi.nlm.nih.gov

Sanger F; Tuppy H (September 1951). "The amino-acid sequence in the phenylalanyl chain of insulin. I. The identification of lower peptides from partial hydrolysates". Biochem. J. 49 (4): 463–81. doi:10.1042/bj0490463. PMC 1197535. PMID 14886310.
SANGER F; TUPPY H (September 1951). "The amino-acid sequence in the phenylalanyl chain of insulin. 2. The investigation of peptides from enzymic hydrolysates". Biochem. J. 49 (4): 481–90. doi:10.1042/bj0490481. PMC 1197536. PMID 14886311.
Sanger, F; Nicklen, S; Coulson, AR (December 1977). "DNA sequencing with chain-terminating inhibitors". Proc Natl Acad Sci U S A. 74 (12): 441–448. Bibcode:1977PNAS...74.5463S. doi:10.1073/pnas.74.12.5463. PMC 431765. PMID 271968.
Sanger, F; Air, GM; Barrell, BG; Brown, NL; Coulson, AR; Fiddes, CA; Hutchison, CA; Slocombe, PM; Smith, M (February 1977). "Nucleotide sequence of bacteriophage phi X174 DNA". Nature. 265 (5596): 687–695. Bibcode:1977Natur.265..687S. doi:10.1038/265687a0. PMID 870828. S2CID 4206886.
Levitt M (May 2001). "The birth of computational structural biology". Nature Structural & Molecular Biology. 8 (5): 392–3. doi:10.1038/87545. PMID 11323711. S2CID 6519868.
Levitt M (November 1969). "Detailed molecular model for transfer ribonucleic acid". Nature. 224 (5221): 759–63. Bibcode:1969Natur.224..759L. doi:10.1038/224759a0. PMID 5361649. S2CID 983981.
Needleman SB; Wunsch CD (March 1970). "A general method applicable to the search for similarities in the amino acid sequence of two proteins". J. Mol. Biol. 48 (3): 443–53. doi:10.1016/0022-2836(70)90057-4. PMID 5420325.
Sanger F, Air GM, Barrell BG, et al. (February 1977). "Nucleotide sequence of bacteriophage phi X174 DNA". Nature. 265 (5596): 687–95. Bibcode:1977Natur.265..687S. doi:10.1038/265687a0. PMID 870828. S2CID 4206886.
Holley, RW; Apgar, J; Everett, GA; Madison, JT; Marquisee, M; Merrill, SH; Penswick, JR; Zamir, A (May 1965). "Structure of a Ribonucleic Acid". Science. 147 (3664): 1462–1465. Bibcode:1965Sci...147.1462H. doi:10.1126/science.147.3664.1462. PMID 14263761. S2CID 40989800.
Hiltemann, Saskia; Rasche, Helena; et al. (January 2023). "Galaxy Training: A Powerful Framework for Teaching!". PLOS Computational Biology. 19 (1) e1010752. Bibcode:2023PLSCB..19E0752H. doi:10.1371/journal.pcbi.1010752. PMC 9829167. PMID 36622853.
Batut, Bérénice; et al. (2018). "Community-Driven Data Analysis Training for Biology". Cell Systems. 6 (6): 752–758.e1. doi:10.1016/j.cels.2018.05.012. PMC 6296361. PMID 29953864.
Bolger, Anthony M.; Lohse, Marc; Usadel, Bjoern (April 2014). "Trimmomatic: a flexible trimmer for Illumina sequence data". Bioinformatics. 30 (15): 2114–2120. doi:10.1093/bioinformatics/btu170. PMC 4103590. PMID 24695404.
Li, Heng; Durbin, Richard (July 2009). "Fast and accurate short read alignment with Burrows–Wheeler transform". Bioinformatics. 25 (14): 1754–1760. doi:10.1093/bioinformatics/btp324. PMC 2705234. PMID 19451168.
Li, Heng (March 2016). "Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences". Bioinformatics. 32 (14): 2103–2110. doi:10.1093/bioinformatics/btw152. PMC 4937194. PMID 27153593.
Dobin, Alexander; Davis, Carrie A.; et al. (October 2012). "STAR: ultrafast universal RNA-seq aligner". Bioinformatics. 29 (1): 15–21. doi:10.1093/bioinformatics/bts635. PMC 3530905. PMID 23104886.
McKenna, Aaron; Hanna, Matthew; et al. (July 2010). "The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data". Genome Research. 20 (9): 1297–1303. doi:10.1101/gr.107524.110. PMC 2928508. PMID 20644199.
Poplin, R; Chang, PC; et al. (September 2018). "A universal SNP and small-indel variant caller using deep neural networks". Nature Biotechnology. 36 (10): 983–987. doi:10.1038/nbt.4235. PMID 30247488.
Sedlazeck, F.J.; Rescheneder, P; et al. (April 2018). "Accurate detection of complex structural variations using single-molecule sequencing". Nature Methods. 15 (6): 461–468. doi:10.1038/s41592-018-0001-7. PMC 5990442. PMID 29713083.
Cingolani, P; Platts, A; et al. (April 2012). "A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff". Fly. 6 (2): 80–92. doi:10.4161/fly.19695. PMC 3679285. PMID 22728672.
Anders, Simon; Pyl, Paul Theodore; Huber, Wolfgang (January 2015). "HTSeq—a Python framework to work with high-throughput sequencing data". Bioinformatics. 31 (2): 166–169. doi:10.1093/bioinformatics/btu638. PMC 4287950. PMID 25260700.
Love, M.I.; Huber, W.; Anders, S. (December 2014). "Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2". Genome Biology. 15 (12): 550. doi:10.1186/s13059-014-0550-8. PMC 4302049. PMID 25516281.
Young, M.D.; Wakefield, M.J; et al. (February 2010). "Gene ontology analysis for RNA-seq: accounting for selection bias". Genome Biology. 11 (2): R14. doi:10.1186/gb-2010-11-2-r14. hdl:11343/56416. PMC 2872874. PMID 20132535.
Luo, Weijun; Brouwer, Cory (June 2013). "Pathview: an R/Bioconductor package for pathway-based data integration and visualization". Bioinformatics. 29 (14): 1830–1831. doi:10.1093/bioinformatics/btt285. PMC 3702256. PMID 23740750.
Wang, Jun; Kong, Lei; et al. (July 2012). "A brief introduction to web-based genome browsers". Briefings in Bioinformatics. 14 (2): 131–143. doi:10.1093/bib/bbs029. PMID 22764121.
Pevsner, J. (February 2009). "Analysis of Genomic DNA with the UCSC Genome Browser". Bioinformatics for DNA Sequence Analysis. Methods in Molecular Biology. Vol. 537. Humana Press. pp. 277–301. doi:10.1007/978-1-59745-251-9_14. ISBN 978-1-59745-251-9. PMID 19378150.
Gribskov M; McLachlan AD; Eisenberg D (July 1987). "Profile analysis: detection of distantly related proteins". Proc. Natl. Acad. Sci. U.S.A. 84 (13): 4355–8. Bibcode:1987PNAS...84.4355G. doi:10.1073/pnas.84.13.4355. PMC 305087. PMID 3474607.
Brown M; Hughey R; Krogh A; Mian IS; Sjölander K; Haussler D (1993). "Using Dirichlet mixture priors to derive hidden Markov models for protein families". Proc Int Conf Intell Syst Mol Biol. 1: 47–55. PMID 7584370.
Krogh A; Brown M; Mian IS; Sjölander K; Haussler D (February 1994). "Hidden Markov models in computational biology. Applications to protein modeling". J. Mol. Biol. 235 (5): 1501–31. doi:10.1006/jmbi.1994.1104. PMID 8107089. S2CID 2160404.
Ye X; Wang G; Altschul SF (December 2011). "An assessment of substitution scores for protein profile-profile comparison". Bioinformatics. 27 (24): 3356–63. doi:10.1093/bioinformatics/btr565. PMC 3232366. PMID 21998158.
Wooley, JC; Godzik, A; Friedberg, I (Feb 26, 2010). "A primer on metagenomics". PLOS Comput Biol. 6 (2) e1000667. Bibcode:2010PLSCB...6E0667W. doi:10.1371/journal.pcbi.1000667. PMC 2829047. PMID 20195499.
Stanke, M; Waack, S (Oct 19, 2003). "Gene prediction with a hidden Markov model and a new intron submodel". Bioinformatics. 19 Suppl 2 (2): 215–25. doi:10.1093/bioinformatics/btg1080. PMID 14534192.
Alipanahi, B; Delong, A; Weirauch, MT; Frey, BJ (Aug 2015). "Predicting the sequence specificities of DNA- and RNA-binding proteins by deep learning". Nat Biotechnol. 33 (8): 831–8. doi:10.1038/nbt.3300. PMID 26213851.
Abe, N; Dror, I; Yang, L; Slattery, M; Zhou, T; Bussemaker, HJ; Rohs R, R; Mann, RS (Apr 9, 2015). "Deconvolving the recognition of DNA shape from sequence". Cell. 161 (2): 307–18. doi:10.1016/j.cell.2015.02.008. PMC 4422406. PMID 25843630.
Moult J; Hubbard T; Bryant SH; Fidelis K; Pedersen JT (1997). "Critical assessment of methods of protein structure prediction (CASP): round II". Proteins. Suppl 1 (S1): 2–6. doi:10.1002/(SICI)1097-0134(1997)1+<2::AID-PROT2>3.0.CO;2-T. PMID 9485489. S2CID 26823924.

ncbi.nlm.nih.gov

Sanger F; Tuppy H (September 1951). "The amino-acid sequence in the phenylalanyl chain of insulin. I. The identification of lower peptides from partial hydrolysates". Biochem. J. 49 (4): 463–81. doi:10.1042/bj0490463. PMC 1197535. PMID 14886310.
SANGER F; TUPPY H (September 1951). "The amino-acid sequence in the phenylalanyl chain of insulin. 2. The investigation of peptides from enzymic hydrolysates". Biochem. J. 49 (4): 481–90. doi:10.1042/bj0490481. PMC 1197536. PMID 14886311.
Sanger, F; Nicklen, S; Coulson, AR (December 1977). "DNA sequencing with chain-terminating inhibitors". Proc Natl Acad Sci U S A. 74 (12): 441–448. Bibcode:1977PNAS...74.5463S. doi:10.1073/pnas.74.12.5463. PMC 431765. PMID 271968.
Hiltemann, Saskia; Rasche, Helena; et al. (January 2023). "Galaxy Training: A Powerful Framework for Teaching!". PLOS Computational Biology. 19 (1) e1010752. Bibcode:2023PLSCB..19E0752H. doi:10.1371/journal.pcbi.1010752. PMC 9829167. PMID 36622853.
Batut, Bérénice; et al. (2018). "Community-Driven Data Analysis Training for Biology". Cell Systems. 6 (6): 752–758.e1. doi:10.1016/j.cels.2018.05.012. PMC 6296361. PMID 29953864.
Bolger, Anthony M.; Lohse, Marc; Usadel, Bjoern (April 2014). "Trimmomatic: a flexible trimmer for Illumina sequence data". Bioinformatics. 30 (15): 2114–2120. doi:10.1093/bioinformatics/btu170. PMC 4103590. PMID 24695404.
Li, Heng; Durbin, Richard (July 2009). "Fast and accurate short read alignment with Burrows–Wheeler transform". Bioinformatics. 25 (14): 1754–1760. doi:10.1093/bioinformatics/btp324. PMC 2705234. PMID 19451168.
Li, Heng (March 2016). "Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences". Bioinformatics. 32 (14): 2103–2110. doi:10.1093/bioinformatics/btw152. PMC 4937194. PMID 27153593.
Dobin, Alexander; Davis, Carrie A.; et al. (October 2012). "STAR: ultrafast universal RNA-seq aligner". Bioinformatics. 29 (1): 15–21. doi:10.1093/bioinformatics/bts635. PMC 3530905. PMID 23104886.
McKenna, Aaron; Hanna, Matthew; et al. (July 2010). "The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data". Genome Research. 20 (9): 1297–1303. doi:10.1101/gr.107524.110. PMC 2928508. PMID 20644199.
Sedlazeck, F.J.; Rescheneder, P; et al. (April 2018). "Accurate detection of complex structural variations using single-molecule sequencing". Nature Methods. 15 (6): 461–468. doi:10.1038/s41592-018-0001-7. PMC 5990442. PMID 29713083.
Cingolani, P; Platts, A; et al. (April 2012). "A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff". Fly. 6 (2): 80–92. doi:10.4161/fly.19695. PMC 3679285. PMID 22728672.
Anders, Simon; Pyl, Paul Theodore; Huber, Wolfgang (January 2015). "HTSeq—a Python framework to work with high-throughput sequencing data". Bioinformatics. 31 (2): 166–169. doi:10.1093/bioinformatics/btu638. PMC 4287950. PMID 25260700.
Love, M.I.; Huber, W.; Anders, S. (December 2014). "Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2". Genome Biology. 15 (12): 550. doi:10.1186/s13059-014-0550-8. PMC 4302049. PMID 25516281.
Young, M.D.; Wakefield, M.J; et al. (February 2010). "Gene ontology analysis for RNA-seq: accounting for selection bias". Genome Biology. 11 (2): R14. doi:10.1186/gb-2010-11-2-r14. hdl:11343/56416. PMC 2872874. PMID 20132535.
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worldcat.org (Global: 4^th place; English: 4^th place)

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Durbin, Richard M.; Eddy, Sean R.; Krogh, Anders; Mitchison, Graeme (1998), Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids (1st ed.), Cambridge, New York: Cambridge University Press, ISBN 0-521-62971-3, OCLC 593254083

Sequence analysis (English Wikipedia)

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