Sequence motif (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Sequence motif" in English language version.

refsWebsite

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18nih.gov

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9doi.org

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5harvard.edu

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3worldcat.org

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1jstor.org

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1ebi.ac.uk

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1semanticscholar.org

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1stanford.edu

179^th place

183^rd place

doi.org

Dlakić, Mensur; Harrington, Rodney E. (1996). "The Effects of Sequence Context on DNA Curvature". Proceedings of the National Academy of Sciences of the United States of America. 93 (9): 3847–3852. Bibcode:1996PNAS...93.3847D. doi:10.1073/pnas.93.9.3847. ISSN 0027-8424. JSTOR 39155. PMC 39447. PMID 8632978.
Bailey TL, Williams N, Misleh C, Li WW (July 2006). "MEME: discovering and analyzing DNA and protein sequence motifs". Nucleic Acids Research. 34 (Web Server issue): W369-73. doi:10.1093/nar/gkl198. PMC 1538909. PMID 16845028.
Weirauch MT, Cote A, Norel R, Annala M, Zhao Y, Riley TR, et al. (February 2013). "Evaluation of methods for modeling transcription factor sequence specificity". Nature Biotechnology. 31 (2): 126–34. doi:10.1038/nbt.2486. PMC 3687085. PMID 23354101.
Akiyama Y, Hosoya T, Poole AM, Hotta Y (December 1996). "The gcm-motif: a novel DNA-binding motif conserved in Drosophila and mammals". Proceedings of the National Academy of Sciences of the United States of America. 93 (25): 14912–6. Bibcode:1996PNAS...9314912A. doi:10.1073/pnas.93.25.14912. PMC 26236. PMID 8962155.
Siddharthan R, Siggia ED, van Nimwegen E (December 2005). "PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny". PLOS Computational Biology. 1 (7): e67. Bibcode:2005PLSCB...1...67S. doi:10.1371/journal.pcbi.0010067. PMC 1309704. PMID 16477324.
Wong KC (October 2017). "MotifHyades: expectation maximization for de novo DNA motif pair discovery on paired sequences". Bioinformatics. 33 (19): 3028–3035. doi:10.1093/bioinformatics/btx381. PMID 28633280.
Wong KC (September 2018). "DNA Motif Recognition Modeling from Protein Sequences". iScience. 7: 198–211. Bibcode:2018iSci....7..198W. doi:10.1016/j.isci.2018.09.003. PMC 6153143. PMID 30267681.
Miller, Andrew K.; Print, Cristin G.; Nielsen, Poul M. F.; Crampin, Edmund J. (2010-11-18). "A Bayesian search for transcriptional motifs". PLOS ONE. 5 (11): e13897. Bibcode:2010PLoSO...513897M. doi:10.1371/journal.pone.0013897. ISSN 1932-6203. PMC 2987817. PMID 21124986.
Che, Dongsheng; Song, Yinglei; Rasheed, Khaled (2005-06-25). "MDGA: Motif discovery using a genetic algorithm". Proceedings of the 7th annual conference on Genetic and evolutionary computation. GECCO '05. New York, NY, USA: Association for Computing Machinery. pp. 447–452. doi:10.1145/1068009.1068080. ISBN 978-1-59593-010-1. S2CID 7892935.

ebi.ac.uk

"Modelling in Pfam". Pfam. Retrieved 14 December 2023.

harvard.edu

ui.adsabs.harvard.edu

Dlakić, Mensur; Harrington, Rodney E. (1996). "The Effects of Sequence Context on DNA Curvature". Proceedings of the National Academy of Sciences of the United States of America. 93 (9): 3847–3852. Bibcode:1996PNAS...93.3847D. doi:10.1073/pnas.93.9.3847. ISSN 0027-8424. JSTOR 39155. PMC 39447. PMID 8632978.
Akiyama Y, Hosoya T, Poole AM, Hotta Y (December 1996). "The gcm-motif: a novel DNA-binding motif conserved in Drosophila and mammals". Proceedings of the National Academy of Sciences of the United States of America. 93 (25): 14912–6. Bibcode:1996PNAS...9314912A. doi:10.1073/pnas.93.25.14912. PMC 26236. PMID 8962155.
Siddharthan R, Siggia ED, van Nimwegen E (December 2005). "PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny". PLOS Computational Biology. 1 (7): e67. Bibcode:2005PLSCB...1...67S. doi:10.1371/journal.pcbi.0010067. PMC 1309704. PMID 16477324.
Wong KC (September 2018). "DNA Motif Recognition Modeling from Protein Sequences". iScience. 7: 198–211. Bibcode:2018iSci....7..198W. doi:10.1016/j.isci.2018.09.003. PMC 6153143. PMID 30267681.
Miller, Andrew K.; Print, Cristin G.; Nielsen, Poul M. F.; Crampin, Edmund J. (2010-11-18). "A Bayesian search for transcriptional motifs". PLOS ONE. 5 (11): e13897. Bibcode:2010PLoSO...513897M. doi:10.1371/journal.pone.0013897. ISSN 1932-6203. PMC 2987817. PMID 21124986.

jstor.org

Dlakić, Mensur; Harrington, Rodney E. (1996). "The Effects of Sequence Context on DNA Curvature". Proceedings of the National Academy of Sciences of the United States of America. 93 (9): 3847–3852. Bibcode:1996PNAS...93.3847D. doi:10.1073/pnas.93.9.3847. ISSN 0027-8424. JSTOR 39155. PMC 39447. PMID 8632978.

nih.gov

pubmed.ncbi.nlm.nih.gov

Dlakić, Mensur; Harrington, Rodney E. (1996). "The Effects of Sequence Context on DNA Curvature". Proceedings of the National Academy of Sciences of the United States of America. 93 (9): 3847–3852. Bibcode:1996PNAS...93.3847D. doi:10.1073/pnas.93.9.3847. ISSN 0027-8424. JSTOR 39155. PMC 39447. PMID 8632978.
Hashim, Fatma A.; Mabrouk, Mai S.; Al-Atabany, Walid (2019). "Review of Different Sequence Motif Finding Algorithms". Avicenna Journal of Medical Biotechnology. 11 (2): 130–148. ISSN 2008-2835. PMC 6490410. PMID 31057715.
Bailey TL, Williams N, Misleh C, Li WW (July 2006). "MEME: discovering and analyzing DNA and protein sequence motifs". Nucleic Acids Research. 34 (Web Server issue): W369-73. doi:10.1093/nar/gkl198. PMC 1538909. PMID 16845028.
Weirauch MT, Cote A, Norel R, Annala M, Zhao Y, Riley TR, et al. (February 2013). "Evaluation of methods for modeling transcription factor sequence specificity". Nature Biotechnology. 31 (2): 126–34. doi:10.1038/nbt.2486. PMC 3687085. PMID 23354101.
Akiyama Y, Hosoya T, Poole AM, Hotta Y (December 1996). "The gcm-motif: a novel DNA-binding motif conserved in Drosophila and mammals". Proceedings of the National Academy of Sciences of the United States of America. 93 (25): 14912–6. Bibcode:1996PNAS...9314912A. doi:10.1073/pnas.93.25.14912. PMC 26236. PMID 8962155.
Siddharthan R, Siggia ED, van Nimwegen E (December 2005). "PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny". PLOS Computational Biology. 1 (7): e67. Bibcode:2005PLSCB...1...67S. doi:10.1371/journal.pcbi.0010067. PMC 1309704. PMID 16477324.
Wong KC (October 2017). "MotifHyades: expectation maximization for de novo DNA motif pair discovery on paired sequences". Bioinformatics. 33 (19): 3028–3035. doi:10.1093/bioinformatics/btx381. PMID 28633280.
Wong KC (September 2018). "DNA Motif Recognition Modeling from Protein Sequences". iScience. 7: 198–211. Bibcode:2018iSci....7..198W. doi:10.1016/j.isci.2018.09.003. PMC 6153143. PMID 30267681.
Miller, Andrew K.; Print, Cristin G.; Nielsen, Poul M. F.; Crampin, Edmund J. (2010-11-18). "A Bayesian search for transcriptional motifs". PLOS ONE. 5 (11): e13897. Bibcode:2010PLoSO...513897M. doi:10.1371/journal.pone.0013897. ISSN 1932-6203. PMC 2987817. PMID 21124986.
Matsuda H, Taniguchi F, Hashimoto A (1997). "An approach to detection of protein structural motifs using an encoding scheme of backbone conformations" (PDF). Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing: 280–91. PMID 9390299.

ncbi.nlm.nih.gov

Dlakić, Mensur; Harrington, Rodney E. (1996). "The Effects of Sequence Context on DNA Curvature". Proceedings of the National Academy of Sciences of the United States of America. 93 (9): 3847–3852. Bibcode:1996PNAS...93.3847D. doi:10.1073/pnas.93.9.3847. ISSN 0027-8424. JSTOR 39155. PMC 39447. PMID 8632978.
Hashim, Fatma A.; Mabrouk, Mai S.; Al-Atabany, Walid (2019). "Review of Different Sequence Motif Finding Algorithms". Avicenna Journal of Medical Biotechnology. 11 (2): 130–148. ISSN 2008-2835. PMC 6490410. PMID 31057715.
Bailey TL, Williams N, Misleh C, Li WW (July 2006). "MEME: discovering and analyzing DNA and protein sequence motifs". Nucleic Acids Research. 34 (Web Server issue): W369-73. doi:10.1093/nar/gkl198. PMC 1538909. PMID 16845028.
Weirauch MT, Cote A, Norel R, Annala M, Zhao Y, Riley TR, et al. (February 2013). "Evaluation of methods for modeling transcription factor sequence specificity". Nature Biotechnology. 31 (2): 126–34. doi:10.1038/nbt.2486. PMC 3687085. PMID 23354101.
Akiyama Y, Hosoya T, Poole AM, Hotta Y (December 1996). "The gcm-motif: a novel DNA-binding motif conserved in Drosophila and mammals". Proceedings of the National Academy of Sciences of the United States of America. 93 (25): 14912–6. Bibcode:1996PNAS...9314912A. doi:10.1073/pnas.93.25.14912. PMC 26236. PMID 8962155.
Siddharthan R, Siggia ED, van Nimwegen E (December 2005). "PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny". PLOS Computational Biology. 1 (7): e67. Bibcode:2005PLSCB...1...67S. doi:10.1371/journal.pcbi.0010067. PMC 1309704. PMID 16477324.
Wong KC (September 2018). "DNA Motif Recognition Modeling from Protein Sequences". iScience. 7: 198–211. Bibcode:2018iSci....7..198W. doi:10.1016/j.isci.2018.09.003. PMC 6153143. PMID 30267681.
Miller, Andrew K.; Print, Cristin G.; Nielsen, Poul M. F.; Crampin, Edmund J. (2010-11-18). "A Bayesian search for transcriptional motifs". PLOS ONE. 5 (11): e13897. Bibcode:2010PLoSO...513897M. doi:10.1371/journal.pone.0013897. ISSN 1932-6203. PMC 2987817. PMID 21124986.

semanticscholar.org

api.semanticscholar.org

Che, Dongsheng; Song, Yinglei; Rasheed, Khaled (2005-06-25). "MDGA: Motif discovery using a genetic algorithm". Proceedings of the 7th annual conference on Genetic and evolutionary computation. GECCO '05. New York, NY, USA: Association for Computing Machinery. pp. 447–452. doi:10.1145/1068009.1068080. ISBN 978-1-59593-010-1. S2CID 7892935.

stanford.edu

psb.stanford.edu

Matsuda H, Taniguchi F, Hashimoto A (1997). "An approach to detection of protein structural motifs using an encoding scheme of backbone conformations" (PDF). Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing: 280–91. PMID 9390299.

worldcat.org

Dlakić, Mensur; Harrington, Rodney E. (1996). "The Effects of Sequence Context on DNA Curvature". Proceedings of the National Academy of Sciences of the United States of America. 93 (9): 3847–3852. Bibcode:1996PNAS...93.3847D. doi:10.1073/pnas.93.9.3847. ISSN 0027-8424. JSTOR 39155. PMC 39447. PMID 8632978.
Hashim, Fatma A.; Mabrouk, Mai S.; Al-Atabany, Walid (2019). "Review of Different Sequence Motif Finding Algorithms". Avicenna Journal of Medical Biotechnology. 11 (2): 130–148. ISSN 2008-2835. PMC 6490410. PMID 31057715.
Miller, Andrew K.; Print, Cristin G.; Nielsen, Poul M. F.; Crampin, Edmund J. (2010-11-18). "A Bayesian search for transcriptional motifs". PLOS ONE. 5 (11): e13897. Bibcode:2010PLoSO...513897M. doi:10.1371/journal.pone.0013897. ISSN 1932-6203. PMC 2987817. PMID 21124986.