Single-cell analysis (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Single-cell analysis" in English language version.

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107nih.gov

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71doi.org

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1fluidmems.com

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1proteomicsnews.blogspot.com

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1pinellolab.org

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arxiv.org (Global: 69^th place; English: 59^th place)

Slavov N (June 2020). "Single-cell protein analysis by mass spectrometry". Current Opinion in Chemical Biology. 60: 1–9. arXiv:2004.02069. doi:10.1016/j.cbpa.2020.04.018. ISSN 1367-5931. PMC 7767890. PMID 32599342. S2CID 219966629.

doi.org (Global: 2^nd place; English: 2^nd place)

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Slavov N (June 2020). "Single-cell protein analysis by mass spectrometry". Current Opinion in Chemical Biology. 60: 1–9. arXiv:2004.02069. doi:10.1016/j.cbpa.2020.04.018. ISSN 1367-5931. PMC 7767890. PMID 32599342. S2CID 219966629.
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Slavov N (January 2020). "Unpicking the proteome in single cells". Science. 367 (6477): 512–513. Bibcode:2020Sci...367..512S. doi:10.1126/science.aaz6695. PMC 7029782. PMID 32001644.
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Borgström E, Paterlini M, Mold JE, Frisen J, Lundeberg J (2017). "Comparison of whole genome amplification techniques for human single cell exome sequencing". PLOS ONE. 12 (2) e0171566. Bibcode:2017PLoSO..1271566B. doi:10.1371/journal.pone.0171566. PMC 5313163. PMID 28207771.
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Vander Plaetsen AS, Deleye L, Cornelis S, Tilleman L, Van Nieuwerburgh F, Deforce D (December 2017). "STR profiling and Copy Number Variation analysis on single, preserved cells using current Whole Genome Amplification methods". Scientific Reports. 7 (1) 17189. Bibcode:2017NatSR...717189V. doi:10.1038/s41598-017-17525-5. PMC 5719346. PMID 29215049.
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Ozadam H, Tonn T, Han CM, Segura A, Hoskins I, Rao S, et al. (June 2023). "Single-cell quantification of ribosome occupancy in early mouse development". Nature. 618 (7967): 1057–1064. Bibcode:2023Natur.618.1057O. doi:10.1038/s41586-023-06228-9. PMC 10307641. PMID 37344592.
Levy E, Slavov N (October 2018). "Single cell protein analysis for systems biology". Essays in Biochemistry. 62 (4): 595–605. doi:10.1042/EBC20180014. PMC 6204083. PMID 30072488.
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Giedt RJ, Pathania D, Carlson JC, McFarland PJ, Del Castillo AF, Juric D, et al. (October 2018). "Single-cell barcode analysis provides a rapid readout of cellular signaling pathways in clinical specimens". Nature Communications. 9 (1) 4550. Bibcode:2018NatCo...9.4550G. doi:10.1038/s41467-018-07002-6. PMC 6208406. PMID 30382095.
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Chen AT, Franks A, Slavov N (July 2019). Cox J (ed.). "DART-ID increases single-cell proteome coverage". PLOS Computational Biology. 15 (7) e1007082. Bibcode:2019PLSCB..15E7082C. doi:10.1371/journal.pcbi.1007082. PMC 6625733. PMID 31260443.
Huffman RG, Leduc A, Wichmann C, di Gioia M, Borriello F, Specht H, et al. (2022-03-18). "Prioritized single-cell proteomics reveals molecular and functional polarization across primary macrophages". bioRxiv 2022.03.16.484655. doi:10.1101/2022.03.16.484655. S2CID 247599981.
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Tang H, Ali A, Abdelazem E, Ottenhoff TH, Heeren RM, Mashaghi A (August 2023). "Random forest and live single‐cell metabolomics reveal metabolic profiles of human macrophages upon polarization". Biotechnology and Bioengineering. 120 (8): 2314–2325. doi:10.1002/bit.28494. hdl:1887/3633712.
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fluidmems.com (Global: low place; English: low place)

"MMS". MMS. Retrieved 2024-05-15.

handle.net (Global: 102^nd place; English: 76^th place)

hdl.handle.net

Tang H, Ali A, Abdelazem E, Ottenhoff TH, Heeren RM, Mashaghi A (August 2023). "Random forest and live single‐cell metabolomics reveal metabolic profiles of human macrophages upon polarization". Biotechnology and Bioengineering. 120 (8): 2314–2325. doi:10.1002/bit.28494. hdl:1887/3633712.

harvard.edu (Global: 18^th place; English: 17^th place)

ui.adsabs.harvard.edu

Habibi I, Cheong R, Lipniacki T, Levchenko A, Emamian ES, Abdi A (April 2017). "Computation and measurement of cell decision making errors using single cell data". PLOS Computational Biology. 13 (4) e1005436. Bibcode:2017PLSCB..13E5436H. doi:10.1371/journal.pcbi.1005436. PMC 5397092. PMID 28379950.
Zheng GX, Terry JM, Belgrader P, Ryvkin P, Bent ZW, Wilson R, et al. (January 2017). "Massively parallel digital transcriptional profiling of single cells". Nature Communications. 8 14049. Bibcode:2017NatCo...814049Z. doi:10.1038/ncomms14049. PMC 5241818. PMID 28091601.
Comi TJ, Do TD, Rubakhin SS, Sweedler JV (March 2017). "Categorizing Cells on the Basis of their Chemical Profiles: Progress in Single-Cell Mass Spectrometry". Journal of the American Chemical Society. 139 (11): 3920–3929. Bibcode:2017JAChS.139.3920C. doi:10.1021/jacs.6b12822. PMC 5364434. PMID 28135079.
Zhang L, Vertes A (April 2018). "Single-Cell Mass Spectrometry Approaches to Explore Cellular Heterogeneity". Angewandte Chemie. 57 (17): 4466–4477. Bibcode:2018ACIE...57.4466Z. doi:10.1002/anie.201709719. PMID 29218763. S2CID 4928231.
Slavov N (January 2020). "Unpicking the proteome in single cells". Science. 367 (6477): 512–513. Bibcode:2020Sci...367..512S. doi:10.1126/science.aaz6695. PMC 7029782. PMID 32001644.
Borgström E, Paterlini M, Mold JE, Frisen J, Lundeberg J (2017). "Comparison of whole genome amplification techniques for human single cell exome sequencing". PLOS ONE. 12 (2) e0171566. Bibcode:2017PLoSO..1271566B. doi:10.1371/journal.pone.0171566. PMC 5313163. PMID 28207771.
Vander Plaetsen AS, Deleye L, Cornelis S, Tilleman L, Van Nieuwerburgh F, Deforce D (December 2017). "STR profiling and Copy Number Variation analysis on single, preserved cells using current Whole Genome Amplification methods". Scientific Reports. 7 (1) 17189. Bibcode:2017NatSR...717189V. doi:10.1038/s41598-017-17525-5. PMC 5719346. PMID 29215049.
Ozadam H, Tonn T, Han CM, Segura A, Hoskins I, Rao S, et al. (June 2023). "Single-cell quantification of ribosome occupancy in early mouse development". Nature. 618 (7967): 1057–1064. Bibcode:2023Natur.618.1057O. doi:10.1038/s41586-023-06228-9. PMC 10307641. PMID 37344592.
Giedt RJ, Pathania D, Carlson JC, McFarland PJ, Del Castillo AF, Juric D, et al. (October 2018). "Single-cell barcode analysis provides a rapid readout of cellular signaling pathways in clinical specimens". Nature Communications. 9 (1) 4550. Bibcode:2018NatCo...9.4550G. doi:10.1038/s41467-018-07002-6. PMC 6208406. PMID 30382095.
Chen AT, Franks A, Slavov N (July 2019). Cox J (ed.). "DART-ID increases single-cell proteome coverage". PLOS Computational Biology. 15 (7) e1007082. Bibcode:2019PLSCB..15E7082C. doi:10.1371/journal.pcbi.1007082. PMC 6625733. PMID 31260443.
Bergman HM, Lanekoff I (2017). "Profiling and quantifying endogenous molecules in single cells using nano-DESI MS". The Analyst. 142 (19): 3639–3647. Bibcode:2017Ana...142.3639B. doi:10.1039/C7AN00885F. ISSN 0003-2654. PMID 28835951.
Pareek V, Tian H, Winograd N, Benkovic SJ (April 2020). "Metabolomics and mass spectrometry imaging reveal channeled de novo purine synthesis in cells". Science. 368 (6488): 283–290. Bibcode:2020Sci...368..283P. doi:10.1126/science.aaz6465. PMC 7494208. PMID 32299949.
Zhang L, Foreman DP, Grant PA, Shrestha B, Moody SA, Villiers F, et al. (October 2014). "In situ metabolic analysis of single plant cells by capillary microsampling and electrospray ionization mass spectrometry with ion mobility separation". The Analyst. 139 (20): 5079–85. Bibcode:2014Ana...139.5079Z. doi:10.1039/C4AN01018C. PMID 25109271.
Duncan KD, Fyrestam J, Lanekoff I (January 2019). "Advances in mass spectrometry based single-cell metabolomics". The Analyst. 144 (3): 782–793. Bibcode:2019Ana...144..782D. doi:10.1039/C8AN01581C. PMID 30426983.
Chen H, Albergante L, Hsu JY, Lareau CA, Lo Bosco G, Guan J, et al. (April 2019). "Single-cell trajectories reconstruction, exploration and mapping of omics data with STREAM". Nature Communications. 10 (1) 1903. Bibcode:2019NatCo..10.1903C. doi:10.1038/s41467-019-09670-4. PMC 6478907. PMID 31015418.

dash.harvard.edu

Chen KH, Boettiger AN, Moffitt JR, Wang S, Zhuang X (April 2015). "RNA imaging. Spatially resolved, highly multiplexed RNA profiling in single cells" (PDF). Science. 348 (6233) aaa6090. doi:10.1126/science.aaa6090. PMC 4662681. PMID 25858977.

mdc-berlin.de (Global: low place; English: low place)

edoc.mdc-berlin.de

Haghverdi L, Büttner M, Wolf FA, Buettner F, Theis FJ (October 2016). "Diffusion pseudotime robustly reconstructs lineage branching" (PDF). Nature Methods. 13 (10): 845–8. doi:10.1038/nmeth.3971. PMID 27571553. S2CID 3594049.

nih.gov (Global: 4^th place; English: 4^th place)

pubmed.ncbi.nlm.nih.gov

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Specht H, Slavov N (August 2018). "Transformative Opportunities for Single-Cell Proteomics". Journal of Proteome Research. 17 (8): 2565–2571. doi:10.1021/acs.jproteome.8b00257. PMC 6089608. PMID 29945450.
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Lee JH (July 2017). "De Novo Gene Expression Reconstruction in Space". Trends in Molecular Medicine. 23 (7): 583–593. doi:10.1016/j.molmed.2017.05.004. PMC 5514424. PMID 28571832.
Gross A, Schoendube J, Zimmermann S, Steeb M, Zengerle R, Koltay P (July 2015). "Technologies for Single-Cell Isolation". International Journal of Molecular Sciences. 16 (8): 16897–919. doi:10.3390/ijms160816897. PMC 4581176. PMID 26213926.
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Chen KH, Boettiger AN, Moffitt JR, Wang S, Zhuang X (April 2015). "RNA imaging. Spatially resolved, highly multiplexed RNA profiling in single cells" (PDF). Science. 348 (6233) aaa6090. doi:10.1126/science.aaa6090. PMC 4662681. PMID 25858977.
Ozadam H, Tonn T, Han CM, Segura A, Hoskins I, Rao S, et al. (June 2023). "Single-cell quantification of ribosome occupancy in early mouse development". Nature. 618 (7967): 1057–1064. Bibcode:2023Natur.618.1057O. doi:10.1038/s41586-023-06228-9. PMC 10307641. PMID 37344592.
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Huffman RG, Chen A, Specht H, Slavov N (June 2019). "DO-MS: Data-Driven Optimization of Mass Spectrometry Methods". Journal of Proteome Research. 18 (6): 2493–2500. doi:10.1021/acs.jproteome.9b00039. PMC 6737531. PMID 31081635.
Chen AT, Franks A, Slavov N (July 2019). Cox J (ed.). "DART-ID increases single-cell proteome coverage". PLOS Computational Biology. 15 (7) e1007082. Bibcode:2019PLSCB..15E7082C. doi:10.1371/journal.pcbi.1007082. PMC 6625733. PMID 31260443.
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"Framework for multiplicative scaling of single-cell proteomics". Nature Biotechnology. 41 (1): 23–24. July 2022. doi:10.1038/s41587-022-01411-1. PMID 35851377. S2CID 250642572.
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Smits AH, Lindeboom RG, Perino M, van Heeringen SJ, Veenstra GJ, Vermeulen M (September 2014). "Global absolute quantification reveals tight regulation of protein expression in single Xenopus eggs". Nucleic Acids Research. 42 (15): 9880–91. doi:10.1093/nar/gku661. PMC 4150773. PMID 25056316.
Bergman HM, Lanekoff I (2017). "Profiling and quantifying endogenous molecules in single cells using nano-DESI MS". The Analyst. 142 (19): 3639–3647. Bibcode:2017Ana...142.3639B. doi:10.1039/C7AN00885F. ISSN 0003-2654. PMID 28835951.
Taylor MJ, Liyu A, Vertes A, Anderton CR (September 2021). "Ambient Single-Cell Analysis and Native Tissue Imaging Using Laser-Ablation Electrospray Ionization Mass Spectrometry with Increased Spatial Resolution". Journal of the American Society for Mass Spectrometry. 32 (9): 2490–2494. doi:10.1021/jasms.1c00149. OSTI 1824325. PMID 34374553. S2CID 236968123.
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ncbi.nlm.nih.gov

Wang D, Bodovitz S (June 2010). "Single cell analysis: the new frontier in 'omics'". Trends in Biotechnology. 28 (6): 281–90. doi:10.1016/j.tibtech.2010.03.002. PMC 2876223. PMID 20434785.
Habibi I, Cheong R, Lipniacki T, Levchenko A, Emamian ES, Abdi A (April 2017). "Computation and measurement of cell decision making errors using single cell data". PLOS Computational Biology. 13 (4) e1005436. Bibcode:2017PLSCB..13E5436H. doi:10.1371/journal.pcbi.1005436. PMC 5397092. PMID 28379950.
Merouane A, Rey-Villamizar N, Lu Y, Liadi I, Romain G, Lu J, et al. (October 2015). "Automated profiling of individual cell-cell interactions from high-throughput time-lapse imaging microscopy in nanowell grids (TIMING)". Bioinformatics. 31 (19): 3189–97. doi:10.1093/bioinformatics/btv355. PMC 4693004. PMID 26059718.
Altschuler SJ, Wu LF (May 2010). "Cellular heterogeneity: do differences make a difference?". Cell. 141 (4): 559–63. doi:10.1016/j.cell.2010.04.033. PMC 2918286. PMID 20478246.
Hu P, Zhang W, Xin H, Deng G (2016-10-25). "Single Cell Isolation and Analysis". Frontiers in Cell and Developmental Biology. 4: 116. doi:10.3389/fcell.2016.00116. PMC 5078503. PMID 27826548.
Mora-Castilla S, To C, Vaezeslami S, Morey R, Srinivasan S, Dumdie JN, et al. (August 2016). "Miniaturization Technologies for Efficient Single-Cell Library Preparation for Next-Generation Sequencing". Journal of Laboratory Automation. 21 (4): 557–67. doi:10.1177/2211068216630741. PMC 4948133. PMID 26891732.
Zheng GX, Terry JM, Belgrader P, Ryvkin P, Bent ZW, Wilson R, et al. (January 2017). "Massively parallel digital transcriptional profiling of single cells". Nature Communications. 8 14049. Bibcode:2017NatCo...814049Z. doi:10.1038/ncomms14049. PMC 5241818. PMID 28091601.
Mercatelli D, Balboni N, Palma A, Aleo E, Sanna PP, Perini G, et al. (January 2021). "Single-Cell Gene Network Analysis and Transcriptional Landscape of MYCN-Amplified Neuroblastoma Cell Lines". Biomolecules. 11 (2): 177. doi:10.3390/biom11020177. PMC 7912277. PMID 33525507.
Tsioris K, Torres AJ, Douce TB, Love JC (2014). "A new toolbox for assessing single cells". Annual Review of Chemical and Biomolecular Engineering. 5: 455–77. doi:10.1146/annurev-chembioeng-060713-035958. PMC 4309009. PMID 24910919.
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Slavov N (June 2020). "Single-cell protein analysis by mass spectrometry". Current Opinion in Chemical Biology. 60: 1–9. arXiv:2004.02069. doi:10.1016/j.cbpa.2020.04.018. ISSN 1367-5931. PMC 7767890. PMID 32599342. S2CID 219966629.
Specht H, Slavov N (August 2018). "Transformative Opportunities for Single-Cell Proteomics". Journal of Proteome Research. 17 (8): 2565–2571. doi:10.1021/acs.jproteome.8b00257. PMC 6089608. PMID 29945450.
Slavov N (January 2020). "Unpicking the proteome in single cells". Science. 367 (6477): 512–513. Bibcode:2020Sci...367..512S. doi:10.1126/science.aaz6695. PMC 7029782. PMID 32001644.
Lee JH (July 2017). "De Novo Gene Expression Reconstruction in Space". Trends in Molecular Medicine. 23 (7): 583–593. doi:10.1016/j.molmed.2017.05.004. PMC 5514424. PMID 28571832.
Gross A, Schoendube J, Zimmermann S, Steeb M, Zengerle R, Koltay P (July 2015). "Technologies for Single-Cell Isolation". International Journal of Molecular Sciences. 16 (8): 16897–919. doi:10.3390/ijms160816897. PMC 4581176. PMID 26213926.
Babayan A, Alawi M, Gormley M, Müller V, Wikman H, McMullin RP, et al. (August 2017). "Comparative study of whole genome amplification and next generation sequencing performance of single cancer cells". Oncotarget. 8 (34): 56066–56080. doi:10.18632/oncotarget.10701. PMC 5593545. PMID 28915574.
Borgström E, Paterlini M, Mold JE, Frisen J, Lundeberg J (2017). "Comparison of whole genome amplification techniques for human single cell exome sequencing". PLOS ONE. 12 (2) e0171566. Bibcode:2017PLoSO..1271566B. doi:10.1371/journal.pone.0171566. PMC 5313163. PMID 28207771.
Vander Plaetsen AS, Deleye L, Cornelis S, Tilleman L, Van Nieuwerburgh F, Deforce D (December 2017). "STR profiling and Copy Number Variation analysis on single, preserved cells using current Whole Genome Amplification methods". Scientific Reports. 7 (1) 17189. Bibcode:2017NatSR...717189V. doi:10.1038/s41598-017-17525-5. PMC 5719346. PMID 29215049.
Lubeck E, Coskun AF, Zhiyentayev T, Ahmad M, Cai L (April 2014). "Single-cell in situ RNA profiling by sequential hybridization". Nature Methods. 11 (4): 360–1. doi:10.1038/nmeth.2892. PMC 4085791. PMID 24681720.
Chen KH, Boettiger AN, Moffitt JR, Wang S, Zhuang X (April 2015). "RNA imaging. Spatially resolved, highly multiplexed RNA profiling in single cells" (PDF). Science. 348 (6233) aaa6090. doi:10.1126/science.aaa6090. PMC 4662681. PMID 25858977.
Ozadam H, Tonn T, Han CM, Segura A, Hoskins I, Rao S, et al. (June 2023). "Single-cell quantification of ribosome occupancy in early mouse development". Nature. 618 (7967): 1057–1064. Bibcode:2023Natur.618.1057O. doi:10.1038/s41586-023-06228-9. PMC 10307641. PMID 37344592.
Levy E, Slavov N (October 2018). "Single cell protein analysis for systems biology". Essays in Biochemistry. 62 (4): 595–605. doi:10.1042/EBC20180014. PMC 6204083. PMID 30072488.
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