Single-molecule real-time sequencing (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Single-molecule real-time sequencing" in English language version.

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1flxlexblog.wordpress.com

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arxiv.org

Koren S, Harhay GP, Smith TP, et al. (2013). "Reducing assembly complexity of microbial genomes with single-molecule sequencing". Genome Biol. 14 (9): R101. arXiv:1304.3752. Bibcode:2013arXiv1304.3752K. doi:10.1186/gb-2013-14-9-r101. PMC 4053942. PMID 24034426.

bio-itworld.com

"PacBio Announces Sequel Sequencing System". Bio-IT World. 30 Sep 2015. Archived from the original on 29 July 2020. Retrieved 16 November 2015.
"PacBio Launches Sequel II System". Bio-IT World. 26 Apr 2019.

cshl.edu

schatzlab.cshl.edu

Schatz M (7 Sep 2011). "SMRT-assembly approaches" (PDF). schatzlab.cshl.edu (PacBio Users Meeting).

doi.org

Levene MJ, Korlach J, Turner SW, et al. (2003). "Zero-Mode Waveguides for Single-Molecule Analysis at High Concentrations". Science. 299 (5607): 682–6. Bibcode:2003Sci...299..682L. doi:10.1126/science.1079700. PMID 12560545. S2CID 6060239.
Eid J, Fehr A, Gray J, et al. (2009). "Real-Time DNA Sequencing from Single Polymerase Molecules". Science. 323 (5910): 133–8. Bibcode:2009Sci...323..133E. doi:10.1126/science.1162986. PMID 19023044. S2CID 54488479.
Korlach J, Marks PJ, Cicero RL, et al. (2008). "Selective aluminum passivation for targeted immobilization of single DNA polymerase molecules in zero-mode waveguide nanostructures". PNAS. 105 (4): 1176–81. Bibcode:2008PNAS..105.1176K. doi:10.1073/pnas.0710982105. PMC 2234111. PMID 18216253.
Foquet M, Samiee KT, Kong X, et al. (2008). "Improved fabrication of zero-mode waveguides for single-molecule detection". J. Appl. Phys. 103 (3): 034301–034301–9. Bibcode:2008JAP...103c4301F. doi:10.1063/1.2831366. S2CID 38892226.
Zhu, Paul; Craighead, Harold G. (2012-06-09). "Zero-Mode Waveguides for Single-Molecule Analysis". Annual Review of Biophysics. 41 (1). Annual Reviews: 269–293. doi:10.1146/annurev-biophys-050511-102338. ISSN 1936-122X. PMID 22577821.
Baibakov, Mikhail; Barulin, Aleksandr; Roy, Prithu; Claude, Jean-Benoît; Patra, Satyajit; Wenger, Jérôme (1999-02-22). "Zero-mode waveguides can be made better: fluorescence enhancement with rectangular aluminum nanoapertures from the visible to the deep ultraviolet". Nanoscale Advances. 2 (9): 4153–4160. doi:10.1039/D0NA00366B. PMC 9417158. PMID 36132755.
Pollock, Jolinda; Glendinning, Laura; Wisedchanwet, Trong; Watson, Mick (2018). "The Madness of Microbiome: Attempting To Find Consensus "Best Practice" for 16S Microbiome Studies". Applied and Environmental Microbiology. 84 (7): e02627-17. Bibcode:2018ApEnM..84E2627P. doi:10.1128/AEM.02627-17. PMC 5861821. PMID 29427429.
Chaisson MJ, Huddleston J, Dennis MY, et al. (2014). "Resolving the complexity of the human genome using single-molecule sequencing". Nature. 517 (7536): 608–11. Bibcode:2015Natur.517..608C. doi:10.1038/nature13907. PMC 4317254. PMID 25383537.
Rasko DA, Webster DR, Sahl JW, et al. (2011). "Origins of the E. coli Strain Causing an Outbreak of Hemolytic–Uremic Syndrome in Germany". N. Engl. J. Med. 365 (8): 709–17. doi:10.1056/NEJMoa1106920. PMC 3168948. PMID 21793740.
Chin CS, Sorenson J, Harris JB, et al. (2011). "The Origin of the Haitian Cholera Outbreak Strain". N. Engl. J. Med. 364 (1): 33–42. doi:10.1056/NEJMoa1012928. PMC 3030187. PMID 21142692.
Ribeiro FJ, Przybylski D, Yin S, et al. (2012). "Finished bacterial genomes from shotgun sequence data". Genome Res. 22 (11): 2270–7. doi:10.1101/gr.141515.112. PMC 3483556. PMID 22829535.
Bashir A, Klammer A, Robins WP, et al. (2012). "A hybrid approach for the automated finishing of bacterial genomes". Nat. Biotechnol. 30 (7): 701–7. doi:10.1038/nbt.2288. PMC 3731737. PMID 22750883.
Koren S, Schatz MC, Walenz BP, et al. (2012). "Hybrid error correction and de novo assembly of single-molecule sequencing reads". Nat. Biotechnol. 30 (7): 693–700. doi:10.1038/nbt.2280. PMC 3707490. PMID 22750884.
Koren S, Harhay GP, Smith TP, et al. (2013). "Reducing assembly complexity of microbial genomes with single-molecule sequencing". Genome Biol. 14 (9): R101. arXiv:1304.3752. Bibcode:2013arXiv1304.3752K. doi:10.1186/gb-2013-14-9-r101. PMC 4053942. PMID 24034426.
Smith CC, Wang Q, Chin CS, et al. (2012). "Validation of ITD mutations in FLT3 as a therapeutic target in human acute myeloid leukaemia". Nature. 485 (7397): 260–3. Bibcode:2012Natur.485..260S. doi:10.1038/nature11016. PMC 3390926. PMID 22504184.
Carneiro MO, Russ C, Ross MG, et al. (2012). "Pacific Biosciences Sequencing Technology for Genotyping and Variation Discovery in Human Data". BMC Genom. 13 (1): 375. doi:10.1186/1471-2164-13-375. PMC 3443046. PMID 22863213.
Flusberg BA, Webster DR, Lee JH, et al. (2010). "Direct detection of DNA methylation during single-molecule, real-time sequencing". Nat. Methods. 7 (6): 461–5. doi:10.1038/nmeth.1459. PMC 2879396. PMID 20453866.
Clark TA, Murray IA, Morgan RD, et al. (2012). "Characterization of DNA Methyltransferase Specificities Using Single-Molecule, Real-Time DNA Sequencing". Nucleic Acids Res. 40 (4): e29. doi:10.1093/nar/gkr1146. PMC 3287169. PMID 22156058.
Song CX, Clark TA, Lu XY, et al. (2011). "Sensitive and Specific Single-Molecule Sequencing of 5-hydroxymethylcytosine". Nat Methods. 9 (1): 75–7. doi:10.1038/nmeth.1779. PMC 3646335. PMID 22101853.
Clark TA, Spittle KE, Turner SW, et al. (2011). "Direct Detection and Sequencing of Damaged DNA Bases". Genome Integr. 2 (1): 10. doi:10.1186/2041-9414-2-10. PMC 3264494. PMID 22185597.
Murray IA, Clark TA, Morgan RD, et al. (2012). "The Methylomes of Six Bacteria". Nucleic Acids Res. 40 (22): 11450–62. doi:10.1093/nar/gks891. PMC 3526280. PMID 23034806.
Fang G, Munera D, Friedman DI, et al. (2012). "Genome-wide Mapping of Methylated Adenine Residues in Pathogenic Escherichia Coli Using Single-Molecule Real-Time Sequencing". Nat. Biotechnol. 30 (12): 1232–9. doi:10.1038/nbt.2432. PMC 3879109. PMID 23138224.
Sharon D, Tilgner H, Grubert F, et al. (2013). "A Single-Molecule Long-Read Survey of the Human Transcriptome". Nat. Biotechnol. 31 (11): 1009–14. doi:10.1038/nbt.2705. PMC 4075632. PMID 24108091.
Au KF, Sebastiano V, Afshar PT, et al. (2013). "Characterization of the human ESC transcriptome by hybrid sequencing". PNAS. 110 (50): E4821–30. Bibcode:2013PNAS..110E4821A. doi:10.1073/pnas.1320101110. PMC 3864310. PMID 24282307.
Ardui S, Ameur A, Vermeesch JR, et al. (2018). "Single Molecule Real-Time (SMRT) Sequencing Comes of Age: Applications and Utilities for Medical Diagnostics". Nucleic Acids Res. 46 (5): 2159–68. doi:10.1093/nar/gky066. PMC 5861413. PMID 29401301.
Wilbe M, Gudmundsson S, Johansson J, et al. (2017). "A Novel Approach Using Long-Read Sequencing and ddPCR to Investigate Gonadal Mosaicism and Estimate Recurrence Risk in Two Families With Developmental Disorders". Prenatal Diagnosis. 37 (11): 1146–54. doi:10.1002/pd.5156. PMC 5725701. PMID 28921562.

flxlexblog.wordpress.com

lexnederbragt (19 Jun 2013). "Longing for the longest reads: PacBio and BluePippin". In between lines of code.

genengnews.com

Gao H, Green SJ, Jafari N, et al. (2012). "Tech Tips: Next-Generation Sequencing". Genetic Engineering & Biotechnology News. 32 (8).

genomeweb.com

Karow J (3 May 2011). "PacBio Ships First Two Commercial Systems; Order Backlog Grows to 44". GenomeWeb.
Karow J (7 Dec 2010). "PacBio Reveals Beta System Specs for RS; Says Commercial Release is on Track for First Half of 2011". GenomeWeb.
Karow J (10 Jan 2012). "After a Year of Testing, Two Early PacBio Customers Expect More Routine Use of RS Sequencer in 2012". GenomeWeb.
Heger M (13 Nov 2012). "PacBio's XL Chemistry Increases Read Lengths and Throughput; CSHL Tests the Tech on Rice Genome". GenomeWeb.
Heger M (5 Mar 2013). "PacBio Users Report Progress in Long Reads for Plant Genome Assembly, Tricky Regions of Human Genome". GenomeWeb.
"New Products: PacBio's RS II; Cufflinks". GenomeWeb. 16 Apr 2013.
Heger M (1 Oct 2015). "PacBio Launches Higher-Throughput, Lower-Cost Single-Molecule Sequencing System". GenomeWeb.
Heger M (7 Mar 2019). "PacBio Shares Early-Access Customer Experiences, New Applications for Sequel II". GenomeWeb.

harvard.edu

ui.adsabs.harvard.edu

Levene MJ, Korlach J, Turner SW, et al. (2003). "Zero-Mode Waveguides for Single-Molecule Analysis at High Concentrations". Science. 299 (5607): 682–6. Bibcode:2003Sci...299..682L. doi:10.1126/science.1079700. PMID 12560545. S2CID 6060239.
Eid J, Fehr A, Gray J, et al. (2009). "Real-Time DNA Sequencing from Single Polymerase Molecules". Science. 323 (5910): 133–8. Bibcode:2009Sci...323..133E. doi:10.1126/science.1162986. PMID 19023044. S2CID 54488479.
Korlach J, Marks PJ, Cicero RL, et al. (2008). "Selective aluminum passivation for targeted immobilization of single DNA polymerase molecules in zero-mode waveguide nanostructures". PNAS. 105 (4): 1176–81. Bibcode:2008PNAS..105.1176K. doi:10.1073/pnas.0710982105. PMC 2234111. PMID 18216253.
Foquet M, Samiee KT, Kong X, et al. (2008). "Improved fabrication of zero-mode waveguides for single-molecule detection". J. Appl. Phys. 103 (3): 034301–034301–9. Bibcode:2008JAP...103c4301F. doi:10.1063/1.2831366. S2CID 38892226.
Pollock, Jolinda; Glendinning, Laura; Wisedchanwet, Trong; Watson, Mick (2018). "The Madness of Microbiome: Attempting To Find Consensus "Best Practice" for 16S Microbiome Studies". Applied and Environmental Microbiology. 84 (7): e02627-17. Bibcode:2018ApEnM..84E2627P. doi:10.1128/AEM.02627-17. PMC 5861821. PMID 29427429.
Chaisson MJ, Huddleston J, Dennis MY, et al. (2014). "Resolving the complexity of the human genome using single-molecule sequencing". Nature. 517 (7536): 608–11. Bibcode:2015Natur.517..608C. doi:10.1038/nature13907. PMC 4317254. PMID 25383537.
Koren S, Harhay GP, Smith TP, et al. (2013). "Reducing assembly complexity of microbial genomes with single-molecule sequencing". Genome Biol. 14 (9): R101. arXiv:1304.3752. Bibcode:2013arXiv1304.3752K. doi:10.1186/gb-2013-14-9-r101. PMC 4053942. PMID 24034426.
Smith CC, Wang Q, Chin CS, et al. (2012). "Validation of ITD mutations in FLT3 as a therapeutic target in human acute myeloid leukaemia". Nature. 485 (7397): 260–3. Bibcode:2012Natur.485..260S. doi:10.1038/nature11016. PMC 3390926. PMID 22504184.
Au KF, Sebastiano V, Afshar PT, et al. (2013). "Characterization of the human ESC transcriptome by hybrid sequencing". PNAS. 110 (50): E4821–30. Bibcode:2013PNAS..110E4821A. doi:10.1073/pnas.1320101110. PMC 3864310. PMID 24282307.

ndsu.edu

"Pacific Biosciences Develops Transformative DNA Sequencing Technology" (PDF). Pacific Biosciences Technology Backgrounder. 2008.

nextgenseek.com

"PacBio Launches PacBio RS II Sequencer". Next Gen Seek. 11 Apr 2013. Archived from the original on 19 December 2019. Retrieved 18 April 2013.

nih.gov

pubmed.ncbi.nlm.nih.gov

Levene MJ, Korlach J, Turner SW, et al. (2003). "Zero-Mode Waveguides for Single-Molecule Analysis at High Concentrations". Science. 299 (5607): 682–6. Bibcode:2003Sci...299..682L. doi:10.1126/science.1079700. PMID 12560545. S2CID 6060239.
Eid J, Fehr A, Gray J, et al. (2009). "Real-Time DNA Sequencing from Single Polymerase Molecules". Science. 323 (5910): 133–8. Bibcode:2009Sci...323..133E. doi:10.1126/science.1162986. PMID 19023044. S2CID 54488479.
Korlach J, Marks PJ, Cicero RL, et al. (2008). "Selective aluminum passivation for targeted immobilization of single DNA polymerase molecules in zero-mode waveguide nanostructures". PNAS. 105 (4): 1176–81. Bibcode:2008PNAS..105.1176K. doi:10.1073/pnas.0710982105. PMC 2234111. PMID 18216253.
Zhu, Paul; Craighead, Harold G. (2012-06-09). "Zero-Mode Waveguides for Single-Molecule Analysis". Annual Review of Biophysics. 41 (1). Annual Reviews: 269–293. doi:10.1146/annurev-biophys-050511-102338. ISSN 1936-122X. PMID 22577821.
Baibakov, Mikhail; Barulin, Aleksandr; Roy, Prithu; Claude, Jean-Benoît; Patra, Satyajit; Wenger, Jérôme (1999-02-22). "Zero-mode waveguides can be made better: fluorescence enhancement with rectangular aluminum nanoapertures from the visible to the deep ultraviolet". Nanoscale Advances. 2 (9): 4153–4160. doi:10.1039/D0NA00366B. PMC 9417158. PMID 36132755.
Pollock, Jolinda; Glendinning, Laura; Wisedchanwet, Trong; Watson, Mick (2018). "The Madness of Microbiome: Attempting To Find Consensus "Best Practice" for 16S Microbiome Studies". Applied and Environmental Microbiology. 84 (7): e02627-17. Bibcode:2018ApEnM..84E2627P. doi:10.1128/AEM.02627-17. PMC 5861821. PMID 29427429.
Chaisson MJ, Huddleston J, Dennis MY, et al. (2014). "Resolving the complexity of the human genome using single-molecule sequencing". Nature. 517 (7536): 608–11. Bibcode:2015Natur.517..608C. doi:10.1038/nature13907. PMC 4317254. PMID 25383537.
Rasko DA, Webster DR, Sahl JW, et al. (2011). "Origins of the E. coli Strain Causing an Outbreak of Hemolytic–Uremic Syndrome in Germany". N. Engl. J. Med. 365 (8): 709–17. doi:10.1056/NEJMoa1106920. PMC 3168948. PMID 21793740.
Chin CS, Sorenson J, Harris JB, et al. (2011). "The Origin of the Haitian Cholera Outbreak Strain". N. Engl. J. Med. 364 (1): 33–42. doi:10.1056/NEJMoa1012928. PMC 3030187. PMID 21142692.
Ribeiro FJ, Przybylski D, Yin S, et al. (2012). "Finished bacterial genomes from shotgun sequence data". Genome Res. 22 (11): 2270–7. doi:10.1101/gr.141515.112. PMC 3483556. PMID 22829535.
Bashir A, Klammer A, Robins WP, et al. (2012). "A hybrid approach for the automated finishing of bacterial genomes". Nat. Biotechnol. 30 (7): 701–7. doi:10.1038/nbt.2288. PMC 3731737. PMID 22750883.
Koren S, Schatz MC, Walenz BP, et al. (2012). "Hybrid error correction and de novo assembly of single-molecule sequencing reads". Nat. Biotechnol. 30 (7): 693–700. doi:10.1038/nbt.2280. PMC 3707490. PMID 22750884.
Koren S, Harhay GP, Smith TP, et al. (2013). "Reducing assembly complexity of microbial genomes with single-molecule sequencing". Genome Biol. 14 (9): R101. arXiv:1304.3752. Bibcode:2013arXiv1304.3752K. doi:10.1186/gb-2013-14-9-r101. PMC 4053942. PMID 24034426.
Smith CC, Wang Q, Chin CS, et al. (2012). "Validation of ITD mutations in FLT3 as a therapeutic target in human acute myeloid leukaemia". Nature. 485 (7397): 260–3. Bibcode:2012Natur.485..260S. doi:10.1038/nature11016. PMC 3390926. PMID 22504184.
Carneiro MO, Russ C, Ross MG, et al. (2012). "Pacific Biosciences Sequencing Technology for Genotyping and Variation Discovery in Human Data". BMC Genom. 13 (1): 375. doi:10.1186/1471-2164-13-375. PMC 3443046. PMID 22863213.
Flusberg BA, Webster DR, Lee JH, et al. (2010). "Direct detection of DNA methylation during single-molecule, real-time sequencing". Nat. Methods. 7 (6): 461–5. doi:10.1038/nmeth.1459. PMC 2879396. PMID 20453866.
Clark TA, Murray IA, Morgan RD, et al. (2012). "Characterization of DNA Methyltransferase Specificities Using Single-Molecule, Real-Time DNA Sequencing". Nucleic Acids Res. 40 (4): e29. doi:10.1093/nar/gkr1146. PMC 3287169. PMID 22156058.
Song CX, Clark TA, Lu XY, et al. (2011). "Sensitive and Specific Single-Molecule Sequencing of 5-hydroxymethylcytosine". Nat Methods. 9 (1): 75–7. doi:10.1038/nmeth.1779. PMC 3646335. PMID 22101853.
Clark TA, Spittle KE, Turner SW, et al. (2011). "Direct Detection and Sequencing of Damaged DNA Bases". Genome Integr. 2 (1): 10. doi:10.1186/2041-9414-2-10. PMC 3264494. PMID 22185597.
Murray IA, Clark TA, Morgan RD, et al. (2012). "The Methylomes of Six Bacteria". Nucleic Acids Res. 40 (22): 11450–62. doi:10.1093/nar/gks891. PMC 3526280. PMID 23034806.
Fang G, Munera D, Friedman DI, et al. (2012). "Genome-wide Mapping of Methylated Adenine Residues in Pathogenic Escherichia Coli Using Single-Molecule Real-Time Sequencing". Nat. Biotechnol. 30 (12): 1232–9. doi:10.1038/nbt.2432. PMC 3879109. PMID 23138224.
Sharon D, Tilgner H, Grubert F, et al. (2013). "A Single-Molecule Long-Read Survey of the Human Transcriptome". Nat. Biotechnol. 31 (11): 1009–14. doi:10.1038/nbt.2705. PMC 4075632. PMID 24108091.
Au KF, Sebastiano V, Afshar PT, et al. (2013). "Characterization of the human ESC transcriptome by hybrid sequencing". PNAS. 110 (50): E4821–30. Bibcode:2013PNAS..110E4821A. doi:10.1073/pnas.1320101110. PMC 3864310. PMID 24282307.
Ardui S, Ameur A, Vermeesch JR, et al. (2018). "Single Molecule Real-Time (SMRT) Sequencing Comes of Age: Applications and Utilities for Medical Diagnostics". Nucleic Acids Res. 46 (5): 2159–68. doi:10.1093/nar/gky066. PMC 5861413. PMID 29401301.
Wilbe M, Gudmundsson S, Johansson J, et al. (2017). "A Novel Approach Using Long-Read Sequencing and ddPCR to Investigate Gonadal Mosaicism and Estimate Recurrence Risk in Two Families With Developmental Disorders". Prenatal Diagnosis. 37 (11): 1146–54. doi:10.1002/pd.5156. PMC 5725701. PMID 28921562.

ncbi.nlm.nih.gov

Korlach J, Marks PJ, Cicero RL, et al. (2008). "Selective aluminum passivation for targeted immobilization of single DNA polymerase molecules in zero-mode waveguide nanostructures". PNAS. 105 (4): 1176–81. Bibcode:2008PNAS..105.1176K. doi:10.1073/pnas.0710982105. PMC 2234111. PMID 18216253.
Baibakov, Mikhail; Barulin, Aleksandr; Roy, Prithu; Claude, Jean-Benoît; Patra, Satyajit; Wenger, Jérôme (1999-02-22). "Zero-mode waveguides can be made better: fluorescence enhancement with rectangular aluminum nanoapertures from the visible to the deep ultraviolet". Nanoscale Advances. 2 (9): 4153–4160. doi:10.1039/D0NA00366B. PMC 9417158. PMID 36132755.
Pollock, Jolinda; Glendinning, Laura; Wisedchanwet, Trong; Watson, Mick (2018). "The Madness of Microbiome: Attempting To Find Consensus "Best Practice" for 16S Microbiome Studies". Applied and Environmental Microbiology. 84 (7): e02627-17. Bibcode:2018ApEnM..84E2627P. doi:10.1128/AEM.02627-17. PMC 5861821. PMID 29427429.
Chaisson MJ, Huddleston J, Dennis MY, et al. (2014). "Resolving the complexity of the human genome using single-molecule sequencing". Nature. 517 (7536): 608–11. Bibcode:2015Natur.517..608C. doi:10.1038/nature13907. PMC 4317254. PMID 25383537.
Rasko DA, Webster DR, Sahl JW, et al. (2011). "Origins of the E. coli Strain Causing an Outbreak of Hemolytic–Uremic Syndrome in Germany". N. Engl. J. Med. 365 (8): 709–17. doi:10.1056/NEJMoa1106920. PMC 3168948. PMID 21793740.
Chin CS, Sorenson J, Harris JB, et al. (2011). "The Origin of the Haitian Cholera Outbreak Strain". N. Engl. J. Med. 364 (1): 33–42. doi:10.1056/NEJMoa1012928. PMC 3030187. PMID 21142692.
Ribeiro FJ, Przybylski D, Yin S, et al. (2012). "Finished bacterial genomes from shotgun sequence data". Genome Res. 22 (11): 2270–7. doi:10.1101/gr.141515.112. PMC 3483556. PMID 22829535.
Bashir A, Klammer A, Robins WP, et al. (2012). "A hybrid approach for the automated finishing of bacterial genomes". Nat. Biotechnol. 30 (7): 701–7. doi:10.1038/nbt.2288. PMC 3731737. PMID 22750883.
Koren S, Schatz MC, Walenz BP, et al. (2012). "Hybrid error correction and de novo assembly of single-molecule sequencing reads". Nat. Biotechnol. 30 (7): 693–700. doi:10.1038/nbt.2280. PMC 3707490. PMID 22750884.
Koren S, Harhay GP, Smith TP, et al. (2013). "Reducing assembly complexity of microbial genomes with single-molecule sequencing". Genome Biol. 14 (9): R101. arXiv:1304.3752. Bibcode:2013arXiv1304.3752K. doi:10.1186/gb-2013-14-9-r101. PMC 4053942. PMID 24034426.
Smith CC, Wang Q, Chin CS, et al. (2012). "Validation of ITD mutations in FLT3 as a therapeutic target in human acute myeloid leukaemia". Nature. 485 (7397): 260–3. Bibcode:2012Natur.485..260S. doi:10.1038/nature11016. PMC 3390926. PMID 22504184.
Carneiro MO, Russ C, Ross MG, et al. (2012). "Pacific Biosciences Sequencing Technology for Genotyping and Variation Discovery in Human Data". BMC Genom. 13 (1): 375. doi:10.1186/1471-2164-13-375. PMC 3443046. PMID 22863213.
Flusberg BA, Webster DR, Lee JH, et al. (2010). "Direct detection of DNA methylation during single-molecule, real-time sequencing". Nat. Methods. 7 (6): 461–5. doi:10.1038/nmeth.1459. PMC 2879396. PMID 20453866.
Clark TA, Murray IA, Morgan RD, et al. (2012). "Characterization of DNA Methyltransferase Specificities Using Single-Molecule, Real-Time DNA Sequencing". Nucleic Acids Res. 40 (4): e29. doi:10.1093/nar/gkr1146. PMC 3287169. PMID 22156058.
Song CX, Clark TA, Lu XY, et al. (2011). "Sensitive and Specific Single-Molecule Sequencing of 5-hydroxymethylcytosine". Nat Methods. 9 (1): 75–7. doi:10.1038/nmeth.1779. PMC 3646335. PMID 22101853.
Clark TA, Spittle KE, Turner SW, et al. (2011). "Direct Detection and Sequencing of Damaged DNA Bases". Genome Integr. 2 (1): 10. doi:10.1186/2041-9414-2-10. PMC 3264494. PMID 22185597.
Murray IA, Clark TA, Morgan RD, et al. (2012). "The Methylomes of Six Bacteria". Nucleic Acids Res. 40 (22): 11450–62. doi:10.1093/nar/gks891. PMC 3526280. PMID 23034806.
Fang G, Munera D, Friedman DI, et al. (2012). "Genome-wide Mapping of Methylated Adenine Residues in Pathogenic Escherichia Coli Using Single-Molecule Real-Time Sequencing". Nat. Biotechnol. 30 (12): 1232–9. doi:10.1038/nbt.2432. PMC 3879109. PMID 23138224.
Sharon D, Tilgner H, Grubert F, et al. (2013). "A Single-Molecule Long-Read Survey of the Human Transcriptome". Nat. Biotechnol. 31 (11): 1009–14. doi:10.1038/nbt.2705. PMC 4075632. PMID 24108091.
Au KF, Sebastiano V, Afshar PT, et al. (2013). "Characterization of the human ESC transcriptome by hybrid sequencing". PNAS. 110 (50): E4821–30. Bibcode:2013PNAS..110E4821A. doi:10.1073/pnas.1320101110. PMC 3864310. PMID 24282307.
Ardui S, Ameur A, Vermeesch JR, et al. (2018). "Single Molecule Real-Time (SMRT) Sequencing Comes of Age: Applications and Utilities for Medical Diagnostics". Nucleic Acids Res. 46 (5): 2159–68. doi:10.1093/nar/gky066. PMC 5861413. PMID 29401301.
Wilbe M, Gudmundsson S, Johansson J, et al. (2017). "A Novel Approach Using Long-Read Sequencing and ddPCR to Investigate Gonadal Mosaicism and Estimate Recurrence Risk in Two Families With Developmental Disorders". Prenatal Diagnosis. 37 (11): 1146–54. doi:10.1002/pd.5156. PMC 5725701. PMID 28921562.

pacb.com

"New DNA Polymerase P4 Delivers Higher-Quality Assemblies Using Fewer SMRT Cells". PacBio Blog. 21 Aug 2013.
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