Stein Aerts (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Stein Aerts" in English language version.

refsWebsite

Global rank English rank

21nih.gov

4^th place

12doi.org

2^nd place

12worldcat.org

5^th place

5aertslab.org

low place

4harvard.edu

18^th place

17^th place

3semanticscholar.org

11^th place

8^th place

2kuleuven.be

4,725^th place

3,556^th place

1hbvl.be

7,838^th place

low place

1phys.org

1,283^rd place

1,130^th place

1genengnews.com

low place

6,625^th place

1flycellatlas.org

low place

1vib.be

low place

1github.com

383^rd place

320^th place

1embo.org

low place

1ulb.be

low place

1azfoundation.be

low place

aertslab.org

Aerts, lab. "Stein Aerts Lab - VIB - KULeuven". aertslab.org. Retrieved 2022-05-04.
"Stein Aerts Lab - VIB - KULeuven". aertslab.org. Retrieved 2022-05-03.
name, Your. "Stein Aerts Lab - VIB - KULeuven". aertslab.org. Retrieved 2022-05-03.

toucan.aertslab.org

"TOUCAN - Regulatory Sequence Analysis - Gene Regulation Bioinformatics". toucan.aertslab.org. Retrieved 2022-05-04.

mendelcraft.aertslab.org

"MendelCraft". mendelcraft.aertslab.org. Retrieved 2022-05-03.

azfoundation.be

AstraZenecaFoundation. "Award winners - AZ Foundation & FWO/F.R.S.-FNRS". Retrieved 3 May 2022.

doi.org

Marx, Vivien (2019-05-01). "Stein Aerts". Nature Methods. 16 (5): 355. doi:10.1038/s41592-019-0397-8. ISSN 1548-7105. PMID 30971811. S2CID 106411505.
Aerts, Stein; Thijs, Gert; Coessens, Bert; Staes, Mik; Moreau, Yves; De Moor, Bart (2003-03-15). "Toucan: deciphering the cis-regulatory logic of coregulated genes". Nucleic Acids Research. 31 (6): 1753–1764. doi:10.1093/nar/gkg268. ISSN 1362-4962. PMC 152870. PMID 12626717.
Aerts, Stein; Van Loo, Peter; Thijs, Gert; Mayer, Herbert; de Martin, Rainer; Moreau, Yves; De Moor, Bart (2005-07-01). "TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis". Nucleic Acids Research. 33 (Web Server issue): W393–396. doi:10.1093/nar/gki354. ISSN 1362-4962. PMC 1160115. PMID 15980497.
Aerts, Stein; Lambrechts, Diether; Maity, Sunit; Van Loo, Peter; Coessens, Bert; De Smet, Frederik; Tranchevent, Leon-Charles; De Moor, Bart; Marynen, Peter; Hassan, Bassem; Carmeliet, Peter (May 2006). "Gene prioritization through genomic data fusion". Nature Biotechnology. 24 (5): 537–544. doi:10.1038/nbt1203. ISSN 1087-0156. PMID 16680138. S2CID 2303897.
Janky, Rekin's; Verfaillie, Annelien; Imrichová, Hana; Van de Sande, Bram; Standaert, Laura; Christiaens, Valerie; Hulselmans, Gert; Herten, Koen; Naval Sanchez, Marina; Potier, Delphine; Svetlichnyy, Dmitry (July 2014). "iRegulon: from a gene list to a gene regulatory network using large motif and track collections". PLOS Computational Biology. 10 (7): e1003731. Bibcode:2014PLSCB..10E3731J. doi:10.1371/journal.pcbi.1003731. ISSN 1553-7358. PMC 4109854. PMID 25058159.
Aibar, Sara; González-Blas, Carmen Bravo; Moerman, Thomas; Huynh-Thu, Vân Anh; Imrichova, Hana; Hulselmans, Gert; Rambow, Florian; Marine, Jean-Christophe; Geurts, Pierre; Aerts, Jan; van den Oord, Joost (November 2017). "SCENIC: single-cell regulatory network inference and clustering". Nature Methods. 14 (11): 1083–1086. doi:10.1038/nmeth.4463. ISSN 1548-7105. PMC 5937676. PMID 28991892.
Bravo González-Blas, Carmen; Minnoye, Liesbeth; Papasokrati, Dafni; Aibar, Sara; Hulselmans, Gert; Christiaens, Valerie; Davie, Kristofer; Wouters, Jasper; Aerts, Stein (May 2019). "cisTopic: cis-regulatory topic modeling on single-cell ATAC-seq data". Nature Methods. 16 (5): 397–400. doi:10.1038/s41592-019-0367-1. ISSN 1548-7105. PMC 6517279. PMID 30962623.
Minnoye, Liesbeth; Taskiran, Ibrahim Ihsan; Mauduit, David; Fazio, Maurizio; Van Aerschot, Linde; Hulselmans, Gert; Christiaens, Valerie; Makhzami, Samira; Seltenhammer, Monika; Karras, Panagiotis; Primot, Aline (December 2020). "Cross-species analysis of enhancer logic using deep learning". Genome Research. 30 (12): 1815–1834. doi:10.1101/gr.260844.120. ISSN 1549-5469. PMC 7706731. PMID 32732264.
Janssens, Jasper; Aibar, Sara; Taskiran, Ibrahim Ihsan; Ismail, Joy N.; Gomez, Alicia Estacio; Aughey, Gabriel; Spanier, Katina I.; De Rop, Florian V.; González-Blas, Carmen Bravo; Dionne, Marc; Grimes, Krista (January 2022). "Decoding gene regulation in the fly brain". Nature. 601 (7894): 630–636. Bibcode:2022Natur.601..630J. doi:10.1038/s41586-021-04262-z. ISSN 1476-4687. PMID 34987221. S2CID 245771324.
Davie, Kristofer; Janssens, Jasper; Koldere, Duygu; De Waegeneer, Maxime; Pech, Uli; Kreft, Łukasz; Aibar, Sara; Makhzami, Samira; Christiaens, Valerie; Bravo González-Blas, Carmen; Poovathingal, Suresh (2018-08-09). "A Single-Cell Transcriptome Atlas of the Aging Drosophila Brain". Cell. 174 (4): 982–998.e20. doi:10.1016/j.cell.2018.05.057. ISSN 1097-4172. PMC 6086935. PMID 29909982.
Li, Hongjie; Janssens, Jasper; De Waegeneer, Maxime; Kolluru, Sai Saroja; Davie, Kristofer; Gardeux, Vincent; Saelens, Wouter; David, Fabrice P. A.; Brbić, Maria; Spanier, Katina; Leskovec, Jure (2022-03-04). "Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly". Science. 375 (6584): eabk2432. doi:10.1126/science.abk2432. ISSN 1095-9203. PMC 8944923. PMID 35239393.
Rajewsky, Nikolaus; Almouzni, Geneviève; Gorski, Stanislaw A.; Aerts, Stein; Amit, Ido; Bertero, Michela G.; Bock, Christoph; Bredenoord, Annelien L.; Cavalli, Giacomo; Chiocca, Susanna; Clevers, Hans (November 2020). "LifeTime and improving European healthcare through cell-based interceptive medicine". Nature. 587 (7834): 377–386. Bibcode:2020Natur.587..377R. doi:10.1038/s41586-020-2715-9. ISSN 1476-4687. PMC 7656507. PMID 32894860.

embo.org

people.embo.org

"Find people in the EMBO Communities". people.embo.org. Retrieved 2023-06-22.

flycellatlas.org

"FLY CELL ATLAS". FLY CELL ATLAS. Retrieved 2022-05-03.

genengnews.com

Sterling, John (2022-01-06). / "AI Used to Study Cell Diversity in the Brain of Drosophila melanogaster". GEN - Genetic Engineering and Biotechnology News. Retrieved 2022-05-03.

github.com

"aertslab". GitHub. Retrieved 2022-05-03.

harvard.edu

ui.adsabs.harvard.edu

Janky, Rekin's; Verfaillie, Annelien; Imrichová, Hana; Van de Sande, Bram; Standaert, Laura; Christiaens, Valerie; Hulselmans, Gert; Herten, Koen; Naval Sanchez, Marina; Potier, Delphine; Svetlichnyy, Dmitry (July 2014). "iRegulon: from a gene list to a gene regulatory network using large motif and track collections". PLOS Computational Biology. 10 (7): e1003731. Bibcode:2014PLSCB..10E3731J. doi:10.1371/journal.pcbi.1003731. ISSN 1553-7358. PMC 4109854. PMID 25058159.
Janssens, Jasper; Aibar, Sara; Taskiran, Ibrahim Ihsan; Ismail, Joy N.; Gomez, Alicia Estacio; Aughey, Gabriel; Spanier, Katina I.; De Rop, Florian V.; González-Blas, Carmen Bravo; Dionne, Marc; Grimes, Krista (January 2022). "Decoding gene regulation in the fly brain". Nature. 601 (7894): 630–636. Bibcode:2022Natur.601..630J. doi:10.1038/s41586-021-04262-z. ISSN 1476-4687. PMID 34987221. S2CID 245771324.
Rajewsky, Nikolaus; Almouzni, Geneviève; Gorski, Stanislaw A.; Aerts, Stein; Amit, Ido; Bertero, Michela G.; Bock, Christoph; Bredenoord, Annelien L.; Cavalli, Giacomo; Chiocca, Susanna; Clevers, Hans (November 2020). "LifeTime and improving European healthcare through cell-based interceptive medicine". Nature. 587 (7834): 377–386. Bibcode:2020Natur.587..377R. doi:10.1038/s41586-020-2715-9. ISSN 1476-4687. PMC 7656507. PMID 32894860.

hms.harvard.edu

"Tiny Hero, Big Map". hms.harvard.edu. 9 March 2022. Retrieved 2022-05-03.

hbvl.be

"Limburgse topwetenschapper Stein Aerts: "Eigenlijk is dit een onmogelijke job"". www.hbvl.be (in Flemish). 6 November 2018. Retrieved 2022-05-03.

kuleuven.be

gbiomed.kuleuven.be

"ModuleSearcher". gbiomed.kuleuven.be. Retrieved 2022-05-04.

kuleuven.be

"ERC-2016 Consolidator Grants for Stein Aerts, Phillip Lemey and Tom Van Doorsselaere". www.kuleuven.be. Retrieved 2022-05-03.

nih.gov

pubmed.ncbi.nlm.nih.gov

Marx, Vivien (2019-05-01). "Stein Aerts". Nature Methods. 16 (5): 355. doi:10.1038/s41592-019-0397-8. ISSN 1548-7105. PMID 30971811. S2CID 106411505.
Aerts, Stein; Thijs, Gert; Coessens, Bert; Staes, Mik; Moreau, Yves; De Moor, Bart (2003-03-15). "Toucan: deciphering the cis-regulatory logic of coregulated genes". Nucleic Acids Research. 31 (6): 1753–1764. doi:10.1093/nar/gkg268. ISSN 1362-4962. PMC 152870. PMID 12626717.
Aerts, Stein; Van Loo, Peter; Thijs, Gert; Mayer, Herbert; de Martin, Rainer; Moreau, Yves; De Moor, Bart (2005-07-01). "TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis". Nucleic Acids Research. 33 (Web Server issue): W393–396. doi:10.1093/nar/gki354. ISSN 1362-4962. PMC 1160115. PMID 15980497.
Aerts, Stein; Lambrechts, Diether; Maity, Sunit; Van Loo, Peter; Coessens, Bert; De Smet, Frederik; Tranchevent, Leon-Charles; De Moor, Bart; Marynen, Peter; Hassan, Bassem; Carmeliet, Peter (May 2006). "Gene prioritization through genomic data fusion". Nature Biotechnology. 24 (5): 537–544. doi:10.1038/nbt1203. ISSN 1087-0156. PMID 16680138. S2CID 2303897.
Janky, Rekin's; Verfaillie, Annelien; Imrichová, Hana; Van de Sande, Bram; Standaert, Laura; Christiaens, Valerie; Hulselmans, Gert; Herten, Koen; Naval Sanchez, Marina; Potier, Delphine; Svetlichnyy, Dmitry (July 2014). "iRegulon: from a gene list to a gene regulatory network using large motif and track collections". PLOS Computational Biology. 10 (7): e1003731. Bibcode:2014PLSCB..10E3731J. doi:10.1371/journal.pcbi.1003731. ISSN 1553-7358. PMC 4109854. PMID 25058159.
Aibar, Sara; González-Blas, Carmen Bravo; Moerman, Thomas; Huynh-Thu, Vân Anh; Imrichova, Hana; Hulselmans, Gert; Rambow, Florian; Marine, Jean-Christophe; Geurts, Pierre; Aerts, Jan; van den Oord, Joost (November 2017). "SCENIC: single-cell regulatory network inference and clustering". Nature Methods. 14 (11): 1083–1086. doi:10.1038/nmeth.4463. ISSN 1548-7105. PMC 5937676. PMID 28991892.
Bravo González-Blas, Carmen; Minnoye, Liesbeth; Papasokrati, Dafni; Aibar, Sara; Hulselmans, Gert; Christiaens, Valerie; Davie, Kristofer; Wouters, Jasper; Aerts, Stein (May 2019). "cisTopic: cis-regulatory topic modeling on single-cell ATAC-seq data". Nature Methods. 16 (5): 397–400. doi:10.1038/s41592-019-0367-1. ISSN 1548-7105. PMC 6517279. PMID 30962623.
Minnoye, Liesbeth; Taskiran, Ibrahim Ihsan; Mauduit, David; Fazio, Maurizio; Van Aerschot, Linde; Hulselmans, Gert; Christiaens, Valerie; Makhzami, Samira; Seltenhammer, Monika; Karras, Panagiotis; Primot, Aline (December 2020). "Cross-species analysis of enhancer logic using deep learning". Genome Research. 30 (12): 1815–1834. doi:10.1101/gr.260844.120. ISSN 1549-5469. PMC 7706731. PMID 32732264.
Janssens, Jasper; Aibar, Sara; Taskiran, Ibrahim Ihsan; Ismail, Joy N.; Gomez, Alicia Estacio; Aughey, Gabriel; Spanier, Katina I.; De Rop, Florian V.; González-Blas, Carmen Bravo; Dionne, Marc; Grimes, Krista (January 2022). "Decoding gene regulation in the fly brain". Nature. 601 (7894): 630–636. Bibcode:2022Natur.601..630J. doi:10.1038/s41586-021-04262-z. ISSN 1476-4687. PMID 34987221. S2CID 245771324.
Davie, Kristofer; Janssens, Jasper; Koldere, Duygu; De Waegeneer, Maxime; Pech, Uli; Kreft, Łukasz; Aibar, Sara; Makhzami, Samira; Christiaens, Valerie; Bravo González-Blas, Carmen; Poovathingal, Suresh (2018-08-09). "A Single-Cell Transcriptome Atlas of the Aging Drosophila Brain". Cell. 174 (4): 982–998.e20. doi:10.1016/j.cell.2018.05.057. ISSN 1097-4172. PMC 6086935. PMID 29909982.
Li, Hongjie; Janssens, Jasper; De Waegeneer, Maxime; Kolluru, Sai Saroja; Davie, Kristofer; Gardeux, Vincent; Saelens, Wouter; David, Fabrice P. A.; Brbić, Maria; Spanier, Katina; Leskovec, Jure (2022-03-04). "Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly". Science. 375 (6584): eabk2432. doi:10.1126/science.abk2432. ISSN 1095-9203. PMC 8944923. PMID 35239393.
Rajewsky, Nikolaus; Almouzni, Geneviève; Gorski, Stanislaw A.; Aerts, Stein; Amit, Ido; Bertero, Michela G.; Bock, Christoph; Bredenoord, Annelien L.; Cavalli, Giacomo; Chiocca, Susanna; Clevers, Hans (November 2020). "LifeTime and improving European healthcare through cell-based interceptive medicine". Nature. 587 (7834): 377–386. Bibcode:2020Natur.587..377R. doi:10.1038/s41586-020-2715-9. ISSN 1476-4687. PMC 7656507. PMID 32894860.

ncbi.nlm.nih.gov

Aerts, Stein; Thijs, Gert; Coessens, Bert; Staes, Mik; Moreau, Yves; De Moor, Bart (2003-03-15). "Toucan: deciphering the cis-regulatory logic of coregulated genes". Nucleic Acids Research. 31 (6): 1753–1764. doi:10.1093/nar/gkg268. ISSN 1362-4962. PMC 152870. PMID 12626717.
Aerts, Stein; Van Loo, Peter; Thijs, Gert; Mayer, Herbert; de Martin, Rainer; Moreau, Yves; De Moor, Bart (2005-07-01). "TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis". Nucleic Acids Research. 33 (Web Server issue): W393–396. doi:10.1093/nar/gki354. ISSN 1362-4962. PMC 1160115. PMID 15980497.
Janky, Rekin's; Verfaillie, Annelien; Imrichová, Hana; Van de Sande, Bram; Standaert, Laura; Christiaens, Valerie; Hulselmans, Gert; Herten, Koen; Naval Sanchez, Marina; Potier, Delphine; Svetlichnyy, Dmitry (July 2014). "iRegulon: from a gene list to a gene regulatory network using large motif and track collections". PLOS Computational Biology. 10 (7): e1003731. Bibcode:2014PLSCB..10E3731J. doi:10.1371/journal.pcbi.1003731. ISSN 1553-7358. PMC 4109854. PMID 25058159.
Aibar, Sara; González-Blas, Carmen Bravo; Moerman, Thomas; Huynh-Thu, Vân Anh; Imrichova, Hana; Hulselmans, Gert; Rambow, Florian; Marine, Jean-Christophe; Geurts, Pierre; Aerts, Jan; van den Oord, Joost (November 2017). "SCENIC: single-cell regulatory network inference and clustering". Nature Methods. 14 (11): 1083–1086. doi:10.1038/nmeth.4463. ISSN 1548-7105. PMC 5937676. PMID 28991892.
Bravo González-Blas, Carmen; Minnoye, Liesbeth; Papasokrati, Dafni; Aibar, Sara; Hulselmans, Gert; Christiaens, Valerie; Davie, Kristofer; Wouters, Jasper; Aerts, Stein (May 2019). "cisTopic: cis-regulatory topic modeling on single-cell ATAC-seq data". Nature Methods. 16 (5): 397–400. doi:10.1038/s41592-019-0367-1. ISSN 1548-7105. PMC 6517279. PMID 30962623.
Minnoye, Liesbeth; Taskiran, Ibrahim Ihsan; Mauduit, David; Fazio, Maurizio; Van Aerschot, Linde; Hulselmans, Gert; Christiaens, Valerie; Makhzami, Samira; Seltenhammer, Monika; Karras, Panagiotis; Primot, Aline (December 2020). "Cross-species analysis of enhancer logic using deep learning". Genome Research. 30 (12): 1815–1834. doi:10.1101/gr.260844.120. ISSN 1549-5469. PMC 7706731. PMID 32732264.
Davie, Kristofer; Janssens, Jasper; Koldere, Duygu; De Waegeneer, Maxime; Pech, Uli; Kreft, Łukasz; Aibar, Sara; Makhzami, Samira; Christiaens, Valerie; Bravo González-Blas, Carmen; Poovathingal, Suresh (2018-08-09). "A Single-Cell Transcriptome Atlas of the Aging Drosophila Brain". Cell. 174 (4): 982–998.e20. doi:10.1016/j.cell.2018.05.057. ISSN 1097-4172. PMC 6086935. PMID 29909982.
Li, Hongjie; Janssens, Jasper; De Waegeneer, Maxime; Kolluru, Sai Saroja; Davie, Kristofer; Gardeux, Vincent; Saelens, Wouter; David, Fabrice P. A.; Brbić, Maria; Spanier, Katina; Leskovec, Jure (2022-03-04). "Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly". Science. 375 (6584): eabk2432. doi:10.1126/science.abk2432. ISSN 1095-9203. PMC 8944923. PMID 35239393.
Rajewsky, Nikolaus; Almouzni, Geneviève; Gorski, Stanislaw A.; Aerts, Stein; Amit, Ido; Bertero, Michela G.; Bock, Christoph; Bredenoord, Annelien L.; Cavalli, Giacomo; Chiocca, Susanna; Clevers, Hans (November 2020). "LifeTime and improving European healthcare through cell-based interceptive medicine". Nature. 587 (7834): 377–386. Bibcode:2020Natur.587..377R. doi:10.1038/s41586-020-2715-9. ISSN 1476-4687. PMC 7656507. PMID 32894860.

phys.org

Leuven, K. U. "Computer program detects differences between human cells". phys.org. Retrieved 2022-05-03.

semanticscholar.org

api.semanticscholar.org

Marx, Vivien (2019-05-01). "Stein Aerts". Nature Methods. 16 (5): 355. doi:10.1038/s41592-019-0397-8. ISSN 1548-7105. PMID 30971811. S2CID 106411505.
Aerts, Stein; Lambrechts, Diether; Maity, Sunit; Van Loo, Peter; Coessens, Bert; De Smet, Frederik; Tranchevent, Leon-Charles; De Moor, Bart; Marynen, Peter; Hassan, Bassem; Carmeliet, Peter (May 2006). "Gene prioritization through genomic data fusion". Nature Biotechnology. 24 (5): 537–544. doi:10.1038/nbt1203. ISSN 1087-0156. PMID 16680138. S2CID 2303897.
Janssens, Jasper; Aibar, Sara; Taskiran, Ibrahim Ihsan; Ismail, Joy N.; Gomez, Alicia Estacio; Aughey, Gabriel; Spanier, Katina I.; De Rop, Florian V.; González-Blas, Carmen Bravo; Dionne, Marc; Grimes, Krista (January 2022). "Decoding gene regulation in the fly brain". Nature. 601 (7894): 630–636. Bibcode:2022Natur.601..630J. doi:10.1038/s41586-021-04262-z. ISSN 1476-4687. PMID 34987221. S2CID 245771324.

ulb.be

actus.ulb.be

ULB (25 January 2022). "Francqui Chair 2021 - "Decoding gene regulation in the single-cell era"".

vib.be

press.vib.be

"The fruit fly: tiny research hero now fully mapped". press.vib.be. 3 March 2022. Retrieved 2022-05-03.

worldcat.org

Marx, Vivien (2019-05-01). "Stein Aerts". Nature Methods. 16 (5): 355. doi:10.1038/s41592-019-0397-8. ISSN 1548-7105. PMID 30971811. S2CID 106411505.
Aerts, Stein; Thijs, Gert; Coessens, Bert; Staes, Mik; Moreau, Yves; De Moor, Bart (2003-03-15). "Toucan: deciphering the cis-regulatory logic of coregulated genes". Nucleic Acids Research. 31 (6): 1753–1764. doi:10.1093/nar/gkg268. ISSN 1362-4962. PMC 152870. PMID 12626717.
Aerts, Stein; Van Loo, Peter; Thijs, Gert; Mayer, Herbert; de Martin, Rainer; Moreau, Yves; De Moor, Bart (2005-07-01). "TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis". Nucleic Acids Research. 33 (Web Server issue): W393–396. doi:10.1093/nar/gki354. ISSN 1362-4962. PMC 1160115. PMID 15980497.
Aerts, Stein; Lambrechts, Diether; Maity, Sunit; Van Loo, Peter; Coessens, Bert; De Smet, Frederik; Tranchevent, Leon-Charles; De Moor, Bart; Marynen, Peter; Hassan, Bassem; Carmeliet, Peter (May 2006). "Gene prioritization through genomic data fusion". Nature Biotechnology. 24 (5): 537–544. doi:10.1038/nbt1203. ISSN 1087-0156. PMID 16680138. S2CID 2303897.
Janky, Rekin's; Verfaillie, Annelien; Imrichová, Hana; Van de Sande, Bram; Standaert, Laura; Christiaens, Valerie; Hulselmans, Gert; Herten, Koen; Naval Sanchez, Marina; Potier, Delphine; Svetlichnyy, Dmitry (July 2014). "iRegulon: from a gene list to a gene regulatory network using large motif and track collections". PLOS Computational Biology. 10 (7): e1003731. Bibcode:2014PLSCB..10E3731J. doi:10.1371/journal.pcbi.1003731. ISSN 1553-7358. PMC 4109854. PMID 25058159.
Aibar, Sara; González-Blas, Carmen Bravo; Moerman, Thomas; Huynh-Thu, Vân Anh; Imrichova, Hana; Hulselmans, Gert; Rambow, Florian; Marine, Jean-Christophe; Geurts, Pierre; Aerts, Jan; van den Oord, Joost (November 2017). "SCENIC: single-cell regulatory network inference and clustering". Nature Methods. 14 (11): 1083–1086. doi:10.1038/nmeth.4463. ISSN 1548-7105. PMC 5937676. PMID 28991892.
Bravo González-Blas, Carmen; Minnoye, Liesbeth; Papasokrati, Dafni; Aibar, Sara; Hulselmans, Gert; Christiaens, Valerie; Davie, Kristofer; Wouters, Jasper; Aerts, Stein (May 2019). "cisTopic: cis-regulatory topic modeling on single-cell ATAC-seq data". Nature Methods. 16 (5): 397–400. doi:10.1038/s41592-019-0367-1. ISSN 1548-7105. PMC 6517279. PMID 30962623.
Minnoye, Liesbeth; Taskiran, Ibrahim Ihsan; Mauduit, David; Fazio, Maurizio; Van Aerschot, Linde; Hulselmans, Gert; Christiaens, Valerie; Makhzami, Samira; Seltenhammer, Monika; Karras, Panagiotis; Primot, Aline (December 2020). "Cross-species analysis of enhancer logic using deep learning". Genome Research. 30 (12): 1815–1834. doi:10.1101/gr.260844.120. ISSN 1549-5469. PMC 7706731. PMID 32732264.
Janssens, Jasper; Aibar, Sara; Taskiran, Ibrahim Ihsan; Ismail, Joy N.; Gomez, Alicia Estacio; Aughey, Gabriel; Spanier, Katina I.; De Rop, Florian V.; González-Blas, Carmen Bravo; Dionne, Marc; Grimes, Krista (January 2022). "Decoding gene regulation in the fly brain". Nature. 601 (7894): 630–636. Bibcode:2022Natur.601..630J. doi:10.1038/s41586-021-04262-z. ISSN 1476-4687. PMID 34987221. S2CID 245771324.
Davie, Kristofer; Janssens, Jasper; Koldere, Duygu; De Waegeneer, Maxime; Pech, Uli; Kreft, Łukasz; Aibar, Sara; Makhzami, Samira; Christiaens, Valerie; Bravo González-Blas, Carmen; Poovathingal, Suresh (2018-08-09). "A Single-Cell Transcriptome Atlas of the Aging Drosophila Brain". Cell. 174 (4): 982–998.e20. doi:10.1016/j.cell.2018.05.057. ISSN 1097-4172. PMC 6086935. PMID 29909982.
Li, Hongjie; Janssens, Jasper; De Waegeneer, Maxime; Kolluru, Sai Saroja; Davie, Kristofer; Gardeux, Vincent; Saelens, Wouter; David, Fabrice P. A.; Brbić, Maria; Spanier, Katina; Leskovec, Jure (2022-03-04). "Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly". Science. 375 (6584): eabk2432. doi:10.1126/science.abk2432. ISSN 1095-9203. PMC 8944923. PMID 35239393.
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