Substitution matrix (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Substitution matrix" in English language version.

refsWebsite

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7doi.org

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7nih.gov

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1cambridge.org

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1worldcat.org

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1psu.edu

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1harvard.edu

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1semanticscholar.org

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cambridge.org

ebooks.cambridge.org

Xiong, Jin (2006). Essential Bioinformatics. Cambridge: Cambridge University Press. doi:10.1017/cbo9780511806087.004. ISBN 978-0-511-80608-7.

doi.org

Xiong, Jin (2006). Essential Bioinformatics. Cambridge: Cambridge University Press. doi:10.1017/cbo9780511806087.004. ISBN 978-0-511-80608-7.
Whelan, Simon; Goldman, Nick (1 May 2001). "A General Empirical Model of Protein Evolution Derived from Multiple Protein Families Using a Maximum-Likelihood Approach". Molecular Biology and Evolution. 18 (5): 691–699. doi:10.1093/oxfordjournals.molbev.a003851. ISSN 0737-4038. PMID 11319253.
Müller, T; Rahmann, S; Rehmsmeier, M (2001). "Non-symmetric score matrices and the detection of homologous transmembrane proteins". Bioinformatics. 17 (Suppl 1): S182–9. doi:10.1093/bioinformatics/17.suppl_1.s182. PMID 11473008.
Rice, DW; Eisenberg, D (1997). "A 3D-1D substitution matrix for protein fold recognition that includes predicted secondary structure of the sequence". Journal of Molecular Biology. 267 (4): 1026–38. CiteSeerX 10.1.1.44.1143. doi:10.1006/jmbi.1997.0924. PMID 9135128.
Gong, Sungsam; Blundell, Tom L. (2008). Levitt, Michael (ed.). "Discarding functional residues from the substitution table improves predictions of active sites within three-dimensional structures". PLOS Computational Biology. 4 (10): e1000179. Bibcode:2008PLSCB...4E0179G. doi:10.1371/journal.pcbi.1000179. PMC 2527532. PMID 18833291.
Goonesekere, NC; Lee, B (2008). "Context-specific amino acid substitution matrices and their use in the detection of protein homologs". Proteins. 71 (2): 910–9. doi:10.1002/prot.21775. PMID 18004781. S2CID 27443393.
Huang, YM; Bystroff, C (2006). "Improved pairwise alignments of proteins in the Twilight Zone using local structure predictions". Bioinformatics. 22 (4): 413–22. doi:10.1093/bioinformatics/bti828. PMID 16352653.

harvard.edu

ui.adsabs.harvard.edu

Gong, Sungsam; Blundell, Tom L. (2008). Levitt, Michael (ed.). "Discarding functional residues from the substitution table improves predictions of active sites within three-dimensional structures". PLOS Computational Biology. 4 (10): e1000179. Bibcode:2008PLSCB...4E0179G. doi:10.1371/journal.pcbi.1000179. PMC 2527532. PMID 18833291.

nih.gov

pubmed.ncbi.nlm.nih.gov

Whelan, Simon; Goldman, Nick (1 May 2001). "A General Empirical Model of Protein Evolution Derived from Multiple Protein Families Using a Maximum-Likelihood Approach". Molecular Biology and Evolution. 18 (5): 691–699. doi:10.1093/oxfordjournals.molbev.a003851. ISSN 0737-4038. PMID 11319253.
Müller, T; Rahmann, S; Rehmsmeier, M (2001). "Non-symmetric score matrices and the detection of homologous transmembrane proteins". Bioinformatics. 17 (Suppl 1): S182–9. doi:10.1093/bioinformatics/17.suppl_1.s182. PMID 11473008.
Rice, DW; Eisenberg, D (1997). "A 3D-1D substitution matrix for protein fold recognition that includes predicted secondary structure of the sequence". Journal of Molecular Biology. 267 (4): 1026–38. CiteSeerX 10.1.1.44.1143. doi:10.1006/jmbi.1997.0924. PMID 9135128.
Gong, Sungsam; Blundell, Tom L. (2008). Levitt, Michael (ed.). "Discarding functional residues from the substitution table improves predictions of active sites within three-dimensional structures". PLOS Computational Biology. 4 (10): e1000179. Bibcode:2008PLSCB...4E0179G. doi:10.1371/journal.pcbi.1000179. PMC 2527532. PMID 18833291.
Goonesekere, NC; Lee, B (2008). "Context-specific amino acid substitution matrices and their use in the detection of protein homologs". Proteins. 71 (2): 910–9. doi:10.1002/prot.21775. PMID 18004781. S2CID 27443393.
Huang, YM; Bystroff, C (2006). "Improved pairwise alignments of proteins in the Twilight Zone using local structure predictions". Bioinformatics. 22 (4): 413–22. doi:10.1093/bioinformatics/bti828. PMID 16352653.

ncbi.nlm.nih.gov

Gong, Sungsam; Blundell, Tom L. (2008). Levitt, Michael (ed.). "Discarding functional residues from the substitution table improves predictions of active sites within three-dimensional structures". PLOS Computational Biology. 4 (10): e1000179. Bibcode:2008PLSCB...4E0179G. doi:10.1371/journal.pcbi.1000179. PMC 2527532. PMID 18833291.

psu.edu

citeseerx.ist.psu.edu

Rice, DW; Eisenberg, D (1997). "A 3D-1D substitution matrix for protein fold recognition that includes predicted secondary structure of the sequence". Journal of Molecular Biology. 267 (4): 1026–38. CiteSeerX 10.1.1.44.1143. doi:10.1006/jmbi.1997.0924. PMID 9135128.

semanticscholar.org

api.semanticscholar.org

Goonesekere, NC; Lee, B (2008). "Context-specific amino acid substitution matrices and their use in the detection of protein homologs". Proteins. 71 (2): 910–9. doi:10.1002/prot.21775. PMID 18004781. S2CID 27443393.

worldcat.org

search.worldcat.org

Whelan, Simon; Goldman, Nick (1 May 2001). "A General Empirical Model of Protein Evolution Derived from Multiple Protein Families Using a Maximum-Likelihood Approach". Molecular Biology and Evolution. 18 (5): 691–699. doi:10.1093/oxfordjournals.molbev.a003851. ISSN 0737-4038. PMID 11319253.