TEV protease (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "TEV protease" in English language version.

refsWebsite

Global rank English rank

31nih.gov

4^th place

21doi.org

2^nd place

6harvard.edu

18^th place

17^th place

2semanticscholar.org

11^th place

8^th place

1uniprot.org

5,673^rd place

6,418^th place

1psu.edu

207^th place

136^th place

1worldcat.org

5^th place

doi.org

Rawlings ND, Barrett AJ, Bateman A (January 2012). "MEROPS: the database of proteolytic enzymes, their substrates and inhibitors". Nucleic Acids Res. 40 (Database issue): D343–50. doi:10.1093/nar/gkr987. PMC 3245014. PMID 22086950.
Kapust RB, Waugh DS (July 2000). "Controlled intracellular processing of fusion proteins by TEV protease". Protein Expr. Purif. 19 (2): 312–8. doi:10.1006/prep.2000.1251. PMID 10873547.
Carrington JC, Dougherty WG (May 1988). "A viral cleavage site cassette: identification of amino acid sequences required for tobacco etch virus polyprotein processing". Proc. Natl. Acad. Sci. U.S.A. 85 (10): 3391–5. Bibcode:1988PNAS...85.3391C. doi:10.1073/pnas.85.10.3391. PMC 280215. PMID 3285343.
Phan J, Zdanov A, Evdokimov AG, Tropea JE, Peters HK, Kapust RB, Li M, Wlodawer A, Waugh DS (December 2002). "Structural basis for the substrate specificity of tobacco etch virus protease". J. Biol. Chem. 277 (52): 50564–72. doi:10.1074/jbc.M207224200. PMID 12377789.
Bazan JF, Fletterick RJ (November 1988). "Viral cysteine proteases are homologous to the trypsin-like family of serine proteases: structural and functional implications". Proc. Natl. Acad. Sci. U.S.A. 85 (21): 7872–6. Bibcode:1988PNAS...85.7872B. doi:10.1073/pnas.85.21.7872. PMC 282299. PMID 3186696.
Dougherty WG, Parks TD, Cary SM, Bazan JF, Fletterick RJ (September 1989). "Characterization of the catalytic residues of the tobacco etch virus 49-kDa proteinase". Virology. 172 (1): 302–10. doi:10.1016/0042-6822(89)90132-3. PMID 2475971.
Tyndall JD, Nall T, Fairlie DP (March 2005). "Proteases universally recognize beta strands in their active sites". Chem. Rev. 105 (3): 973–99. doi:10.1021/cr040669e. PMID 15755082.
Dougherty WG, Cary SM, Parks TD (August 1989). "Molecular genetic analysis of a plant virus polyprotein cleavage site: a model". Virology. 171 (2): 356–64. doi:10.1016/0042-6822(89)90603-X. PMID 2669323.
Kapust, Rachel B.; Tözsér, József; Copeland, Terry D.; Waugh, David S. (2002-06-28). "The P1' specificity of tobacco etch virus protease". Biochemical and Biophysical Research Communications. 294 (5): 949–955. CiteSeerX 10.1.1.375.4271. doi:10.1016/S0006-291X(02)00574-0. ISSN 0006-291X. PMID 12074568.
Boulware KT, Jabaiah A, Daugherty PS (June 2010). "Evolutionary optimization of peptide substrates for proteases that exhibit rapid hydrolysis kinetics". Biotechnol. Bioeng. 106 (3): 339–46. doi:10.1002/bit.22693. PMID 20148412. S2CID 205499859.
Kostallas G, Löfdahl PÅ, Samuelson P (2011). "Substrate profiling of tobacco etch virus protease using a novel fluorescence-assisted whole-cell assay". PLOS ONE. 6 (1): e16136. Bibcode:2011PLoSO...616136K. doi:10.1371/journal.pone.0016136. PMC 3022733. PMID 21267463.
Parks TD, Leuther KK, Howard ED, Johnston SA, Dougherty WG (February 1994). "Release of proteins and peptides from fusion proteins using a recombinant plant virus proteinase". Anal. Biochem. 216 (2): 413–7. doi:10.1006/abio.1994.1060. PMID 8179197.
Yi L, Gebhard MC, Li Q, Taft JM, Georgiou G, Iverson BL (April 2013). "Engineering of TEV protease variants by yeast ER sequestration screening (YESS) of combinatorial libraries". Proc. Natl. Acad. Sci. U.S.A. 110 (18): 7229–34. Bibcode:2013PNAS..110.7229Y. doi:10.1073/pnas.1215994110. PMC 3645551. PMID 23589865.
Renicke C, Spadaccini R, Taxis C (2013). "A tobacco etch virus protease with increased substrate tolerance at the P1' position". PLOS ONE. 8 (6): e67915. Bibcode:2013PLoSO...867915R. doi:10.1371/journal.pone.0067915. PMC 3691164. PMID 23826349.
Verhoeven KD, Altstadt OC, Savinov SN (March 2012). "Intracellular detection and evolution of site-specific proteases using a genetic selection system". Appl. Biochem. Biotechnol. 166 (5): 1340–54. doi:10.1007/s12010-011-9522-6. PMID 22270548. S2CID 36583382.
Kapust RB, Tözsér J, Fox JD, Anderson DE, Cherry S, Copeland TD, Waugh DS (December 2001). "Tobacco etch virus protease: mechanism of autolysis and rational design of stable mutants with wild-type catalytic proficiency". Protein Eng. 14 (12): 993–1000. doi:10.1093/protein/14.12.993. PMID 11809930.
Raran-Kurussi S, Tözsér J, Cherry S, Tropea JE, Waugh DS (15 May 2013). "Differential temperature dependence of tobacco etch virus and rhinovirus 3C proteases". Analytical Biochemistry. 436 (2): 142–144. doi:10.1016/j.ab.2013.01.031. PMC 4196241. PMID 23395976.
Nallamsetty S, Kapust RB, Tözsér J, Cherry S, Tropea JE, Copeland TD, Waugh DS (November 2004). "Efficient site-specific processing of fusion proteins by tobacco vein mottling virus protease in vivo and in vitro". Protein Expr. Purif. 38 (1): 108–115. doi:10.1016/j.pep.2004.08.016. PMID 15477088.
Cabrita LD, Gilis D, Robertson AL, Dehouck Y, Rooman M, Bottomley SP (2007). "Enhancing the stability and solubility of TEV protease using in silico design". Protein Sci. 16 (11): 2360–7. doi:10.1110/ps.072822507. PMC 2211701. PMID 17905838.
Correnti CE, Gewe MM, Mehlin C, Bandaranayake AD, Johnsen WA, Rupert PB, Brusniak MY, Clarke M, Burke SE, De Van Der Schueren W, Pilat K, Turnbaugh SM, May D, Watson A, Chan MK, Bahl CD, Olson JM, Strong RK (2018). "Screening, large-scale production and structure-based classification of cystine-dense peptides". Nat Struct Mol Biol. 25 (3): 270–278. doi:10.1038/s41594-018-0033-9. PMC 5840021. PMID 29483648.
Keeble AH, Turkki P, Stokes S, Khairil Anuar IN, Rahikainen R, Hytönen VP, Howarth M (December 2019). "Approaching infinite affinity through engineering of peptide-protein interaction". Proceedings of the National Academy of Sciences of the United States of America. 116 (52): 26523–26533. Bibcode:2019PNAS..11626523K. doi:10.1073/pnas.1909653116. PMC 6936558. PMID 31822621.

harvard.edu

ui.adsabs.harvard.edu

Carrington JC, Dougherty WG (May 1988). "A viral cleavage site cassette: identification of amino acid sequences required for tobacco etch virus polyprotein processing". Proc. Natl. Acad. Sci. U.S.A. 85 (10): 3391–5. Bibcode:1988PNAS...85.3391C. doi:10.1073/pnas.85.10.3391. PMC 280215. PMID 3285343.
Bazan JF, Fletterick RJ (November 1988). "Viral cysteine proteases are homologous to the trypsin-like family of serine proteases: structural and functional implications". Proc. Natl. Acad. Sci. U.S.A. 85 (21): 7872–6. Bibcode:1988PNAS...85.7872B. doi:10.1073/pnas.85.21.7872. PMC 282299. PMID 3186696.
Kostallas G, Löfdahl PÅ, Samuelson P (2011). "Substrate profiling of tobacco etch virus protease using a novel fluorescence-assisted whole-cell assay". PLOS ONE. 6 (1): e16136. Bibcode:2011PLoSO...616136K. doi:10.1371/journal.pone.0016136. PMC 3022733. PMID 21267463.
Yi L, Gebhard MC, Li Q, Taft JM, Georgiou G, Iverson BL (April 2013). "Engineering of TEV protease variants by yeast ER sequestration screening (YESS) of combinatorial libraries". Proc. Natl. Acad. Sci. U.S.A. 110 (18): 7229–34. Bibcode:2013PNAS..110.7229Y. doi:10.1073/pnas.1215994110. PMC 3645551. PMID 23589865.
Renicke C, Spadaccini R, Taxis C (2013). "A tobacco etch virus protease with increased substrate tolerance at the P1' position". PLOS ONE. 8 (6): e67915. Bibcode:2013PLoSO...867915R. doi:10.1371/journal.pone.0067915. PMC 3691164. PMID 23826349.
Keeble AH, Turkki P, Stokes S, Khairil Anuar IN, Rahikainen R, Hytönen VP, Howarth M (December 2019). "Approaching infinite affinity through engineering of peptide-protein interaction". Proceedings of the National Academy of Sciences of the United States of America. 116 (52): 26523–26533. Bibcode:2019PNAS..11626523K. doi:10.1073/pnas.1909653116. PMC 6936558. PMID 31822621.

nih.gov

pubmed.ncbi.nlm.nih.gov

Rawlings ND, Barrett AJ, Bateman A (January 2012). "MEROPS: the database of proteolytic enzymes, their substrates and inhibitors". Nucleic Acids Res. 40 (Database issue): D343–50. doi:10.1093/nar/gkr987. PMC 3245014. PMID 22086950.
Kapust RB, Waugh DS (July 2000). "Controlled intracellular processing of fusion proteins by TEV protease". Protein Expr. Purif. 19 (2): 312–8. doi:10.1006/prep.2000.1251. PMID 10873547.
Carrington JC, Dougherty WG (May 1988). "A viral cleavage site cassette: identification of amino acid sequences required for tobacco etch virus polyprotein processing". Proc. Natl. Acad. Sci. U.S.A. 85 (10): 3391–5. Bibcode:1988PNAS...85.3391C. doi:10.1073/pnas.85.10.3391. PMC 280215. PMID 3285343.
Phan J, Zdanov A, Evdokimov AG, Tropea JE, Peters HK, Kapust RB, Li M, Wlodawer A, Waugh DS (December 2002). "Structural basis for the substrate specificity of tobacco etch virus protease". J. Biol. Chem. 277 (52): 50564–72. doi:10.1074/jbc.M207224200. PMID 12377789.
Bazan JF, Fletterick RJ (November 1988). "Viral cysteine proteases are homologous to the trypsin-like family of serine proteases: structural and functional implications". Proc. Natl. Acad. Sci. U.S.A. 85 (21): 7872–6. Bibcode:1988PNAS...85.7872B. doi:10.1073/pnas.85.21.7872. PMC 282299. PMID 3186696.
Dougherty WG, Parks TD, Cary SM, Bazan JF, Fletterick RJ (September 1989). "Characterization of the catalytic residues of the tobacco etch virus 49-kDa proteinase". Virology. 172 (1): 302–10. doi:10.1016/0042-6822(89)90132-3. PMID 2475971.
Tyndall JD, Nall T, Fairlie DP (March 2005). "Proteases universally recognize beta strands in their active sites". Chem. Rev. 105 (3): 973–99. doi:10.1021/cr040669e. PMID 15755082.
Dougherty WG, Cary SM, Parks TD (August 1989). "Molecular genetic analysis of a plant virus polyprotein cleavage site: a model". Virology. 171 (2): 356–64. doi:10.1016/0042-6822(89)90603-X. PMID 2669323.
Kapust, Rachel B.; Tözsér, József; Copeland, Terry D.; Waugh, David S. (2002-06-28). "The P1' specificity of tobacco etch virus protease". Biochemical and Biophysical Research Communications. 294 (5): 949–955. CiteSeerX 10.1.1.375.4271. doi:10.1016/S0006-291X(02)00574-0. ISSN 0006-291X. PMID 12074568.
Boulware KT, Jabaiah A, Daugherty PS (June 2010). "Evolutionary optimization of peptide substrates for proteases that exhibit rapid hydrolysis kinetics". Biotechnol. Bioeng. 106 (3): 339–46. doi:10.1002/bit.22693. PMID 20148412. S2CID 205499859.
Kostallas G, Löfdahl PÅ, Samuelson P (2011). "Substrate profiling of tobacco etch virus protease using a novel fluorescence-assisted whole-cell assay". PLOS ONE. 6 (1): e16136. Bibcode:2011PLoSO...616136K. doi:10.1371/journal.pone.0016136. PMC 3022733. PMID 21267463.
Parks TD, Leuther KK, Howard ED, Johnston SA, Dougherty WG (February 1994). "Release of proteins and peptides from fusion proteins using a recombinant plant virus proteinase". Anal. Biochem. 216 (2): 413–7. doi:10.1006/abio.1994.1060. PMID 8179197.
Yi L, Gebhard MC, Li Q, Taft JM, Georgiou G, Iverson BL (April 2013). "Engineering of TEV protease variants by yeast ER sequestration screening (YESS) of combinatorial libraries". Proc. Natl. Acad. Sci. U.S.A. 110 (18): 7229–34. Bibcode:2013PNAS..110.7229Y. doi:10.1073/pnas.1215994110. PMC 3645551. PMID 23589865.
Renicke C, Spadaccini R, Taxis C (2013). "A tobacco etch virus protease with increased substrate tolerance at the P1' position". PLOS ONE. 8 (6): e67915. Bibcode:2013PLoSO...867915R. doi:10.1371/journal.pone.0067915. PMC 3691164. PMID 23826349.
Verhoeven KD, Altstadt OC, Savinov SN (March 2012). "Intracellular detection and evolution of site-specific proteases using a genetic selection system". Appl. Biochem. Biotechnol. 166 (5): 1340–54. doi:10.1007/s12010-011-9522-6. PMID 22270548. S2CID 36583382.
Kapust RB, Tözsér J, Fox JD, Anderson DE, Cherry S, Copeland TD, Waugh DS (December 2001). "Tobacco etch virus protease: mechanism of autolysis and rational design of stable mutants with wild-type catalytic proficiency". Protein Eng. 14 (12): 993–1000. doi:10.1093/protein/14.12.993. PMID 11809930.
Raran-Kurussi S, Tözsér J, Cherry S, Tropea JE, Waugh DS (15 May 2013). "Differential temperature dependence of tobacco etch virus and rhinovirus 3C proteases". Analytical Biochemistry. 436 (2): 142–144. doi:10.1016/j.ab.2013.01.031. PMC 4196241. PMID 23395976.
Nallamsetty S, Kapust RB, Tözsér J, Cherry S, Tropea JE, Copeland TD, Waugh DS (November 2004). "Efficient site-specific processing of fusion proteins by tobacco vein mottling virus protease in vivo and in vitro". Protein Expr. Purif. 38 (1): 108–115. doi:10.1016/j.pep.2004.08.016. PMID 15477088.
Cabrita LD, Gilis D, Robertson AL, Dehouck Y, Rooman M, Bottomley SP (2007). "Enhancing the stability and solubility of TEV protease using in silico design". Protein Sci. 16 (11): 2360–7. doi:10.1110/ps.072822507. PMC 2211701. PMID 17905838.
Correnti CE, Gewe MM, Mehlin C, Bandaranayake AD, Johnsen WA, Rupert PB, Brusniak MY, Clarke M, Burke SE, De Van Der Schueren W, Pilat K, Turnbaugh SM, May D, Watson A, Chan MK, Bahl CD, Olson JM, Strong RK (2018). "Screening, large-scale production and structure-based classification of cystine-dense peptides". Nat Struct Mol Biol. 25 (3): 270–278. doi:10.1038/s41594-018-0033-9. PMC 5840021. PMID 29483648.
Keeble AH, Turkki P, Stokes S, Khairil Anuar IN, Rahikainen R, Hytönen VP, Howarth M (December 2019). "Approaching infinite affinity through engineering of peptide-protein interaction". Proceedings of the National Academy of Sciences of the United States of America. 116 (52): 26523–26533. Bibcode:2019PNAS..11626523K. doi:10.1073/pnas.1909653116. PMC 6936558. PMID 31822621.

ncbi.nlm.nih.gov

Rawlings ND, Barrett AJ, Bateman A (January 2012). "MEROPS: the database of proteolytic enzymes, their substrates and inhibitors". Nucleic Acids Res. 40 (Database issue): D343–50. doi:10.1093/nar/gkr987. PMC 3245014. PMID 22086950.
Carrington JC, Dougherty WG (May 1988). "A viral cleavage site cassette: identification of amino acid sequences required for tobacco etch virus polyprotein processing". Proc. Natl. Acad. Sci. U.S.A. 85 (10): 3391–5. Bibcode:1988PNAS...85.3391C. doi:10.1073/pnas.85.10.3391. PMC 280215. PMID 3285343.
Bazan JF, Fletterick RJ (November 1988). "Viral cysteine proteases are homologous to the trypsin-like family of serine proteases: structural and functional implications". Proc. Natl. Acad. Sci. U.S.A. 85 (21): 7872–6. Bibcode:1988PNAS...85.7872B. doi:10.1073/pnas.85.21.7872. PMC 282299. PMID 3186696.
Kostallas G, Löfdahl PÅ, Samuelson P (2011). "Substrate profiling of tobacco etch virus protease using a novel fluorescence-assisted whole-cell assay". PLOS ONE. 6 (1): e16136. Bibcode:2011PLoSO...616136K. doi:10.1371/journal.pone.0016136. PMC 3022733. PMID 21267463.
Yi L, Gebhard MC, Li Q, Taft JM, Georgiou G, Iverson BL (April 2013). "Engineering of TEV protease variants by yeast ER sequestration screening (YESS) of combinatorial libraries". Proc. Natl. Acad. Sci. U.S.A. 110 (18): 7229–34. Bibcode:2013PNAS..110.7229Y. doi:10.1073/pnas.1215994110. PMC 3645551. PMID 23589865.
Renicke C, Spadaccini R, Taxis C (2013). "A tobacco etch virus protease with increased substrate tolerance at the P1' position". PLOS ONE. 8 (6): e67915. Bibcode:2013PLoSO...867915R. doi:10.1371/journal.pone.0067915. PMC 3691164. PMID 23826349.
Raran-Kurussi S, Tözsér J, Cherry S, Tropea JE, Waugh DS (15 May 2013). "Differential temperature dependence of tobacco etch virus and rhinovirus 3C proteases". Analytical Biochemistry. 436 (2): 142–144. doi:10.1016/j.ab.2013.01.031. PMC 4196241. PMID 23395976.
Cabrita LD, Gilis D, Robertson AL, Dehouck Y, Rooman M, Bottomley SP (2007). "Enhancing the stability and solubility of TEV protease using in silico design". Protein Sci. 16 (11): 2360–7. doi:10.1110/ps.072822507. PMC 2211701. PMID 17905838.
Correnti CE, Gewe MM, Mehlin C, Bandaranayake AD, Johnsen WA, Rupert PB, Brusniak MY, Clarke M, Burke SE, De Van Der Schueren W, Pilat K, Turnbaugh SM, May D, Watson A, Chan MK, Bahl CD, Olson JM, Strong RK (2018). "Screening, large-scale production and structure-based classification of cystine-dense peptides". Nat Struct Mol Biol. 25 (3): 270–278. doi:10.1038/s41594-018-0033-9. PMC 5840021. PMID 29483648.
Keeble AH, Turkki P, Stokes S, Khairil Anuar IN, Rahikainen R, Hytönen VP, Howarth M (December 2019). "Approaching infinite affinity through engineering of peptide-protein interaction". Proceedings of the National Academy of Sciences of the United States of America. 116 (52): 26523–26533. Bibcode:2019PNAS..11626523K. doi:10.1073/pnas.1909653116. PMC 6936558. PMID 31822621.

psu.edu

citeseerx.ist.psu.edu

Kapust, Rachel B.; Tözsér, József; Copeland, Terry D.; Waugh, David S. (2002-06-28). "The P1' specificity of tobacco etch virus protease". Biochemical and Biophysical Research Communications. 294 (5): 949–955. CiteSeerX 10.1.1.375.4271. doi:10.1016/S0006-291X(02)00574-0. ISSN 0006-291X. PMID 12074568.

semanticscholar.org

api.semanticscholar.org

Boulware KT, Jabaiah A, Daugherty PS (June 2010). "Evolutionary optimization of peptide substrates for proteases that exhibit rapid hydrolysis kinetics". Biotechnol. Bioeng. 106 (3): 339–46. doi:10.1002/bit.22693. PMID 20148412. S2CID 205499859.
Verhoeven KD, Altstadt OC, Savinov SN (March 2012). "Intracellular detection and evolution of site-specific proteases using a genetic selection system". Appl. Biochem. Biotechnol. 166 (5): 1340–54. doi:10.1007/s12010-011-9522-6. PMID 22270548. S2CID 36583382.

uniprot.org

UniProt: TEV polyprotein: "P04517".

worldcat.org

search.worldcat.org

Kapust, Rachel B.; Tözsér, József; Copeland, Terry D.; Waugh, David S. (2002-06-28). "The P1' specificity of tobacco etch virus protease". Biochemical and Biophysical Research Communications. 294 (5): 949–955. CiteSeerX 10.1.1.375.4271. doi:10.1016/S0006-291X(02)00574-0. ISSN 0006-291X. PMID 12074568.