TIM barrel (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "TIM barrel" in English language version.

refsWebsite

Global rank English rank

60nih.gov

4^th place

44doi.org

2^nd place

9harvard.edu

18^th place

17^th place

3semanticscholar.org

11^th place

8^th place

1acs.org

1,248^th place

1,104^th place

1caltech.edu

887^th place

714^th place

1uliege.be

low place

1handle.net

102^nd place

76^th place

acs.org

cen.acs.org

Borman S (2015). "Protein designers roll out a barrel". Chemical & Engineering News. Vol. 93, no. 47. p. 6.

caltech.edu

authors.library.caltech.edu

Offredi F, Dubail F, Kischel P, Sarinski K, Stern AS, Van de Weerdt C, et al. (January 2003). "De novo backbone and sequence design of an idealized alpha/beta-barrel protein: evidence of stable tertiary structure" (PDF). Journal of Molecular Biology. 325 (1): 163–74. doi:10.1016/S0022-2836(02)01206-8. PMID 12473459.

doi.org

Wierenga RK (March 2001). "The TIM-barrel fold: a versatile framework for efficient enzymes". FEBS Letters. 492 (3): 193–8. Bibcode:2001FEBSL.492..193W. doi:10.1016/s0014-5793(01)02236-0. PMID 11257493. S2CID 42044123.
Banner DW, Bloomer AC, Petsko GA, Phillips DC, Pogson CI, Wilson IA, et al. (June 1975). "Structure of chicken muscle triose phosphate isomerase determined crystallographically at 2.5 angstrom resolution using amino acid sequence data". Nature. 255 (5510): 609–14. doi:10.1038/255609a0. PMID 1134550. S2CID 4195346.
Jansen R, Gerstein M (March 2000). "Analysis of the yeast transcriptome with structural and functional categories: characterizing highly expressed proteins". Nucleic Acids Research. 28 (6): 1481–8. doi:10.1093/nar/28.6.1481. PMC 111042. PMID 10684945.
Nagano N, Hutchinson EG, Thornton JM (October 1999). "Barrel structures in proteins: automatic identification and classification including a sequence analysis of TIM barrels". Protein Science. 8 (10): 2072–84. doi:10.1110/ps.8.10.2072. PMC 2144152. PMID 10548053.
Nagano N, Orengo CA, Thornton JM (August 2002). "One fold with many functions: the evolutionary relationships between TIM barrel families based on their sequences, structures and functions". Journal of Molecular Biology. 321 (5): 741–65. doi:10.1016/s0022-2836(02)00649-6. PMID 12206759.
Livesay DR, La D (May 2005). "The evolutionary origins and catalytic importance of conserved electrostatic networks within TIM-barrel proteins". Protein Science. 14 (5): 1158–70. doi:10.1110/ps.041221105. PMC 2253277. PMID 15840824.
Chung SY, Subbiah S (October 1996). "A structural explanation for the twilight zone of protein sequence homology". Structure. 4 (10): 1123–7. doi:10.1016/s0969-2126(96)00119-0. PMID 8939745.
Vijayabaskar MS, Vishveshwara S (2012). "Insights into the fold organization of TIM barrel from interaction energy based structure networks". PLOS Computational Biology. 8 (5): e1002505. Bibcode:2012PLSCB...8E2505V. doi:10.1371/journal.pcbi.1002505. PMC 3355060. PMID 22615547.
Farber GK, Petsko GA (June 1990). "The evolution of alpha/beta barrel enzymes". Trends in Biochemical Sciences. 15 (6): 228–34. doi:10.1016/0968-0004(90)90035-A. PMID 2200166.
Reardon D, Farber GK (April 1995). "The structure and evolution of alpha/beta barrel proteins". FASEB Journal. 9 (7): 497–503. doi:10.1096/fasebj.9.7.7737457. PMID 7737457. S2CID 23208817.
Lang D, Thoma R, Henn-Sax M, Sterner R, Wilmanns M (September 2000). "Structural evidence for evolution of the beta/alpha barrel scaffold by gene duplication and fusion". Science. 289 (5484): 1546–50. Bibcode:2000Sci...289.1546L. doi:10.1126/science.289.5484.1546. PMID 10968789.
Söding J, Remmert M, Biegert A (July 2006). "HHrep: de novo protein repeat detection and the origin of TIM barrels". Nucleic Acids Research. 34 (Web Server issue): W137-42. doi:10.1093/nar/gkl130. PMC 1538828. PMID 16844977.
Seitz T, Bocola M, Claren J, Sterner R (September 2007). "Stabilisation of a (βα)8-barrel protein designed from identical half barrels". Journal of Molecular Biology. 372 (1): 114–29. doi:10.1016/j.jmb.2007.06.036. PMID 17631894.
Höcker B, Lochner A, Seitz T, Claren J, Sterner R (February 2009). "High-resolution crystal structure of an artificial (βα)(8)-barrel protein designed from identical half-barrels". Biochemistry. 48 (6): 1145–7. doi:10.1021/bi802125b. PMID 19166324.
Höcker B, Claren J, Sterner R, Makar AB, McMartin KE, Palese M, Tephly TR (June 1975). "Formate assay in body fluids: application in methanol poisoning". Biochemical Medicine. 13 (2): 117–26. doi:10.1016/0006-2944(75)90147-7. PMC 534502. PMID 15539462.
Claren J, Malisi C, Höcker B, Sterner R (March 2009). "Establishing wild-type levels of catalytic activity on natural and artificial (beta alpha)8-barrel protein scaffolds". Proceedings of the National Academy of Sciences of the United States of America. 106 (10): 3704–9. Bibcode:2009PNAS..106.3704C. doi:10.1073/pnas.0810342106. PMC 2656144. PMID 19237570.
Bharat TA, Eisenbeis S, Zeth K, Höcker B (July 2008). "A beta alpha-barrel built by the combination of fragments from different folds". Proceedings of the National Academy of Sciences of the United States of America. 105 (29): 9942–7. Bibcode:2008PNAS..105.9942B. doi:10.1073/pnas.0802202105. PMC 2481348. PMID 18632584.
Eisenbeis S, Proffitt W, Coles M, Truffault V, Shanmugaratnam S, Meiler J, Höcker B (March 2012). "Potential of fragment recombination for rational design of proteins". Journal of the American Chemical Society. 134 (9): 4019–22. doi:10.1021/ja211657k. PMID 22329686.
Fortenberry C, Bowman EA, Proffitt W, Dorr B, Combs S, Harp J, et al. (November 2011). "Exploring symmetry as an avenue to the computational design of large protein domains". Journal of the American Chemical Society. 133 (45): 18026–9. doi:10.1021/ja210593m. PMC 3781211. PMID 21978247.
Huang PS, Feldmeier K, Parmeggiani F, Velasco DA, Höcker B, Baker D (January 2016). "De novo design of a four-fold symmetric TIM-barrel protein with atomic-level accuracy". Nature Chemical Biology. 12 (1): 29–34. doi:10.1038/nchembio.1966. PMC 4684731. PMID 26595462.
Nagarajan D, Deka G, Rao M (August 2015). "Design of symmetric TIM barrel proteins from first principles". BMC Biochemistry. 16 (1): 18. doi:10.1186/s12858-015-0047-4. PMC 4531894. PMID 26264284.
Murzin AG, Lesk AM, Chothia C (March 1994). "Principles determining the structure of beta-sheet barrels in proteins. I. A theoretical analysis". Journal of Molecular Biology. 236 (5): 1369–81. doi:10.1016/0022-2836(94)90064-7. PMID 8126726.
Brändén CI (1991). "The TIM barrel—the most frequently occurring folding motif in proteins". Current Opinion in Structural Biology. 1 (6): 978–983. doi:10.1016/0959-440x(91)90094-a.
Barber MJ, Neame PJ, Lim LW, White S, Matthews FS (April 1992). "Correlation of x-ray deduced and experimental amino acid sequences of trimethylamine dehydrogenase". The Journal of Biological Chemistry. 267 (10): 6611–9. doi:10.1016/S0021-9258(19)50471-9. PMID 1551870.
Forsyth WR, Bilsel O, Gu Z, Matthews CR (September 2007). "Topology and sequence in the folding of a TIM barrel protein: global analysis highlights partitioning between transient off-pathway and stable on-pathway folding intermediates in the complex folding mechanism of a (βα)8 barrel of unknown function from B. subtilis". Journal of Molecular Biology. 372 (1): 236–53. doi:10.1016/j.jmb.2007.06.018. PMID 17619021.
Carstensen L, Sperl JM, Bocola M, List F, Schmid FX, Sterner R (August 2012). "Conservation of the folding mechanism between designed primordial (βα)8-barrel proteins and their modern descendant". Journal of the American Chemical Society. 134 (30): 12786–91. doi:10.1021/ja304951v. PMID 22758610.
Gu Z, Rao MK, Forsyth WR, Finke JM, Matthews CR (November 2007). "Structural analysis of kinetic folding intermediates for a TIM barrel protein, indole-3-glycerol phosphate synthase, by hydrogen exchange mass spectrometry and Gō model simulation". Journal of Molecular Biology. 374 (2): 528–46. doi:10.1016/j.jmb.2007.09.024. PMC 2735044. PMID 17942114.
Halloran KT, Wang Y, Arora K, Chakravarthy S, Irving TC, Bilsel O, et al. (August 2019). "Frustration and folding of a TIM barrel protein". Proceedings of the National Academy of Sciences of the United States of America. 116 (33): 16378–16383. Bibcode:2019PNAS..11616378H. doi:10.1073/pnas.1900880116. PMC 6697809. PMID 31346089.
Chan YH, Venev SV, Zeldovich KB, Matthews CR (March 2017). "Correlation of fitness landscapes from three orthologous TIM barrels originates from sequence and structure constraints". Nature Communications. 8: 14614. Bibcode:2017NatCo...814614C. doi:10.1038/ncomms14614. PMC 5343507. PMID 28262665.
Hietpas RT, Jensen JD, Bolon DN (May 2011). "Experimental illumination of a fitness landscape". Proceedings of the National Academy of Sciences of the United States of America. 108 (19): 7896–901. doi:10.1073/pnas.1016024108. PMC 3093508. PMID 21464309.
Ochoa-Leyva A, Soberón X, Sánchez F, Argüello M, Montero-Morán G, Saab-Rincón G (April 2009). "Protein design through systematic catalytic loop exchange in the (beta/alpha)8 fold". Journal of Molecular Biology. 387 (4): 949–64. doi:10.1016/j.jmb.2009.02.022. PMID 19233201.
Ochoa-Leyva A, Barona-Gómez F, Saab-Rincón G, Verdel-Aranda K, Sánchez F, Soberón X (August 2011). "Exploring the Structure-Function Loop Adaptability of a (β/α)(8)-Barrel Enzyme through Loop Swapping and Hinge Variability". Journal of Molecular Biology. 411 (1): 143–57. doi:10.1016/j.jmb.2011.05.027. PMID 21635898.
Brändén CI (1991). "The TIM barrel—the most frequently occurring folding motif in proteins". Current Opinion in Structural Biology. 1 (6): 978–983. doi:10.1016/0959-440x(91)90094-a.
Copley RR, Bork P (November 2000). "Homology among (βα)(8) barrels: implications for the evolution of metabolic pathways". Journal of Molecular Biology. 303 (4): 627–41. doi:10.1006/jmbi.2000.4152. PMID 11054297.
Wymer N, Buchanan LV, Henderson D, Mehta N, Botting CH, Pocivavsek L, et al. (January 2001). "Directed evolution of a new catalytic site in 2-keto-3-deoxy-6-phosphogluconate aldolase from Escherichia coli". Structure. 9 (1): 1–9. doi:10.1016/S0969-2126(00)00555-4. PMID 11342129.
Goraj K, Renard A, Martial JA (March 1990). "Synthesis, purification and initial structural characterization of octarellin, a de novo polypeptide modelled on the alpha/beta-barrel proteins". Protein Engineering. 3 (4): 259–66. doi:10.1093/protein/3.4.259. PMID 2188263.
Beauregard M, Goraj K, Goffin V, Heremans K, Goormaghtigh E, Ruysschaert JM, Martial JA (October 1991). "Spectroscopic investigation of structure in octarellin (a de novo protein designed to adopt the alpha/beta-barrel packing)". Protein Engineering. 4 (7): 745–9. doi:10.1093/protein/4.7.745. PMID 1798699.
Houbrechts A, Moreau B, Abagyan R, Mainfroid V, Préaux G, Lamproye A, et al. (March 1995). "Second-generation octarellins: two new de novo (beta/alpha)8 polypeptides designed for investigating the influence of beta-residue packing on the alpha/beta-barrel structure stability". Protein Engineering. 8 (3): 249–59. doi:10.1093/protein/8.3.249. PMID 7479687.
Offredi F, Dubail F, Kischel P, Sarinski K, Stern AS, Van de Weerdt C, et al. (January 2003). "De novo backbone and sequence design of an idealized alpha/beta-barrel protein: evidence of stable tertiary structure" (PDF). Journal of Molecular Biology. 325 (1): 163–74. doi:10.1016/S0022-2836(02)01206-8. PMID 12473459.
Figueroa M, Oliveira N, Lejeune A, Kaufmann KW, Dorr BM, Matagne A, et al. (2013). "Octarellin VI: using rosetta to design a putative artificial (β/α)8 protein". PLOS ONE. 8 (8): e71858. Bibcode:2013PLoSO...871858F. doi:10.1371/journal.pone.0071858. PMC 3747059. PMID 23977165.
Figueroa M, Sleutel M, Vandevenne M, Parvizi G, Attout S, Jacquin O, et al. (July 2016). "The unexpected structure of the designed protein Octarellin V.1 forms a challenge for protein structure prediction tools". Journal of Structural Biology. 195 (1): 19–30. doi:10.1016/j.jsb.2016.05.004. hdl:2268/199167. PMID 27181418.
Nanda V (January 2016). "Protein Design: Getting to the bottom of the TIM barrel". Nature Chemical Biology. 12 (1): 2–3. doi:10.1038/nchembio.1987. PMID 26678608.
Kaufmann KW, Lemmon GH, Deluca SL, Sheehan JH, Meiler J (April 2010). "Practically useful: what the Rosetta protein modeling suite can do for you". Biochemistry. 49 (14): 2987–98. doi:10.1021/bi902153g. PMC 2850155. PMID 20235548.
Koga N, Tatsumi-Koga R, Liu G, Xiao R, Acton TB, Montelione GT, Baker D (November 2012). "Principles for designing ideal protein structures". Nature. 491 (7423): 222–7. Bibcode:2012Natur.491..222K. doi:10.1038/nature11600. PMC 3705962. PMID 23135467.

handle.net

hdl.handle.net

Figueroa M, Sleutel M, Vandevenne M, Parvizi G, Attout S, Jacquin O, et al. (July 2016). "The unexpected structure of the designed protein Octarellin V.1 forms a challenge for protein structure prediction tools". Journal of Structural Biology. 195 (1): 19–30. doi:10.1016/j.jsb.2016.05.004. hdl:2268/199167. PMID 27181418.

harvard.edu

ui.adsabs.harvard.edu

Wierenga RK (March 2001). "The TIM-barrel fold: a versatile framework for efficient enzymes". FEBS Letters. 492 (3): 193–8. Bibcode:2001FEBSL.492..193W. doi:10.1016/s0014-5793(01)02236-0. PMID 11257493. S2CID 42044123.
Vijayabaskar MS, Vishveshwara S (2012). "Insights into the fold organization of TIM barrel from interaction energy based structure networks". PLOS Computational Biology. 8 (5): e1002505. Bibcode:2012PLSCB...8E2505V. doi:10.1371/journal.pcbi.1002505. PMC 3355060. PMID 22615547.
Lang D, Thoma R, Henn-Sax M, Sterner R, Wilmanns M (September 2000). "Structural evidence for evolution of the beta/alpha barrel scaffold by gene duplication and fusion". Science. 289 (5484): 1546–50. Bibcode:2000Sci...289.1546L. doi:10.1126/science.289.5484.1546. PMID 10968789.
Claren J, Malisi C, Höcker B, Sterner R (March 2009). "Establishing wild-type levels of catalytic activity on natural and artificial (beta alpha)8-barrel protein scaffolds". Proceedings of the National Academy of Sciences of the United States of America. 106 (10): 3704–9. Bibcode:2009PNAS..106.3704C. doi:10.1073/pnas.0810342106. PMC 2656144. PMID 19237570.
Bharat TA, Eisenbeis S, Zeth K, Höcker B (July 2008). "A beta alpha-barrel built by the combination of fragments from different folds". Proceedings of the National Academy of Sciences of the United States of America. 105 (29): 9942–7. Bibcode:2008PNAS..105.9942B. doi:10.1073/pnas.0802202105. PMC 2481348. PMID 18632584.
Halloran KT, Wang Y, Arora K, Chakravarthy S, Irving TC, Bilsel O, et al. (August 2019). "Frustration and folding of a TIM barrel protein". Proceedings of the National Academy of Sciences of the United States of America. 116 (33): 16378–16383. Bibcode:2019PNAS..11616378H. doi:10.1073/pnas.1900880116. PMC 6697809. PMID 31346089.
Chan YH, Venev SV, Zeldovich KB, Matthews CR (March 2017). "Correlation of fitness landscapes from three orthologous TIM barrels originates from sequence and structure constraints". Nature Communications. 8: 14614. Bibcode:2017NatCo...814614C. doi:10.1038/ncomms14614. PMC 5343507. PMID 28262665.
Figueroa M, Oliveira N, Lejeune A, Kaufmann KW, Dorr BM, Matagne A, et al. (2013). "Octarellin VI: using rosetta to design a putative artificial (β/α)8 protein". PLOS ONE. 8 (8): e71858. Bibcode:2013PLoSO...871858F. doi:10.1371/journal.pone.0071858. PMC 3747059. PMID 23977165.
Koga N, Tatsumi-Koga R, Liu G, Xiao R, Acton TB, Montelione GT, Baker D (November 2012). "Principles for designing ideal protein structures". Nature. 491 (7423): 222–7. Bibcode:2012Natur.491..222K. doi:10.1038/nature11600. PMC 3705962. PMID 23135467.

nih.gov

pubmed.ncbi.nlm.nih.gov

Wierenga RK (March 2001). "The TIM-barrel fold: a versatile framework for efficient enzymes". FEBS Letters. 492 (3): 193–8. Bibcode:2001FEBSL.492..193W. doi:10.1016/s0014-5793(01)02236-0. PMID 11257493. S2CID 42044123.
Banner DW, Bloomer AC, Petsko GA, Phillips DC, Pogson CI, Wilson IA, et al. (June 1975). "Structure of chicken muscle triose phosphate isomerase determined crystallographically at 2.5 angstrom resolution using amino acid sequence data". Nature. 255 (5510): 609–14. doi:10.1038/255609a0. PMID 1134550. S2CID 4195346.
Jansen R, Gerstein M (March 2000). "Analysis of the yeast transcriptome with structural and functional categories: characterizing highly expressed proteins". Nucleic Acids Research. 28 (6): 1481–8. doi:10.1093/nar/28.6.1481. PMC 111042. PMID 10684945.
Nagano N, Hutchinson EG, Thornton JM (October 1999). "Barrel structures in proteins: automatic identification and classification including a sequence analysis of TIM barrels". Protein Science. 8 (10): 2072–84. doi:10.1110/ps.8.10.2072. PMC 2144152. PMID 10548053.
Nagano N, Orengo CA, Thornton JM (August 2002). "One fold with many functions: the evolutionary relationships between TIM barrel families based on their sequences, structures and functions". Journal of Molecular Biology. 321 (5): 741–65. doi:10.1016/s0022-2836(02)00649-6. PMID 12206759.
Livesay DR, La D (May 2005). "The evolutionary origins and catalytic importance of conserved electrostatic networks within TIM-barrel proteins". Protein Science. 14 (5): 1158–70. doi:10.1110/ps.041221105. PMC 2253277. PMID 15840824.
Chung SY, Subbiah S (October 1996). "A structural explanation for the twilight zone of protein sequence homology". Structure. 4 (10): 1123–7. doi:10.1016/s0969-2126(96)00119-0. PMID 8939745.
Vijayabaskar MS, Vishveshwara S (2012). "Insights into the fold organization of TIM barrel from interaction energy based structure networks". PLOS Computational Biology. 8 (5): e1002505. Bibcode:2012PLSCB...8E2505V. doi:10.1371/journal.pcbi.1002505. PMC 3355060. PMID 22615547.
Farber GK, Petsko GA (June 1990). "The evolution of alpha/beta barrel enzymes". Trends in Biochemical Sciences. 15 (6): 228–34. doi:10.1016/0968-0004(90)90035-A. PMID 2200166.
Reardon D, Farber GK (April 1995). "The structure and evolution of alpha/beta barrel proteins". FASEB Journal. 9 (7): 497–503. doi:10.1096/fasebj.9.7.7737457. PMID 7737457. S2CID 23208817.
Lang D, Thoma R, Henn-Sax M, Sterner R, Wilmanns M (September 2000). "Structural evidence for evolution of the beta/alpha barrel scaffold by gene duplication and fusion". Science. 289 (5484): 1546–50. Bibcode:2000Sci...289.1546L. doi:10.1126/science.289.5484.1546. PMID 10968789.
Söding J, Remmert M, Biegert A (July 2006). "HHrep: de novo protein repeat detection and the origin of TIM barrels". Nucleic Acids Research. 34 (Web Server issue): W137-42. doi:10.1093/nar/gkl130. PMC 1538828. PMID 16844977.
Seitz T, Bocola M, Claren J, Sterner R (September 2007). "Stabilisation of a (βα)8-barrel protein designed from identical half barrels". Journal of Molecular Biology. 372 (1): 114–29. doi:10.1016/j.jmb.2007.06.036. PMID 17631894.
Höcker B, Lochner A, Seitz T, Claren J, Sterner R (February 2009). "High-resolution crystal structure of an artificial (βα)(8)-barrel protein designed from identical half-barrels". Biochemistry. 48 (6): 1145–7. doi:10.1021/bi802125b. PMID 19166324.
Höcker B, Claren J, Sterner R, Makar AB, McMartin KE, Palese M, Tephly TR (June 1975). "Formate assay in body fluids: application in methanol poisoning". Biochemical Medicine. 13 (2): 117–26. doi:10.1016/0006-2944(75)90147-7. PMC 534502. PMID 15539462.
Claren J, Malisi C, Höcker B, Sterner R (March 2009). "Establishing wild-type levels of catalytic activity on natural and artificial (beta alpha)8-barrel protein scaffolds". Proceedings of the National Academy of Sciences of the United States of America. 106 (10): 3704–9. Bibcode:2009PNAS..106.3704C. doi:10.1073/pnas.0810342106. PMC 2656144. PMID 19237570.
Bharat TA, Eisenbeis S, Zeth K, Höcker B (July 2008). "A beta alpha-barrel built by the combination of fragments from different folds". Proceedings of the National Academy of Sciences of the United States of America. 105 (29): 9942–7. Bibcode:2008PNAS..105.9942B. doi:10.1073/pnas.0802202105. PMC 2481348. PMID 18632584.
Eisenbeis S, Proffitt W, Coles M, Truffault V, Shanmugaratnam S, Meiler J, Höcker B (March 2012). "Potential of fragment recombination for rational design of proteins". Journal of the American Chemical Society. 134 (9): 4019–22. doi:10.1021/ja211657k. PMID 22329686.
Fortenberry C, Bowman EA, Proffitt W, Dorr B, Combs S, Harp J, et al. (November 2011). "Exploring symmetry as an avenue to the computational design of large protein domains". Journal of the American Chemical Society. 133 (45): 18026–9. doi:10.1021/ja210593m. PMC 3781211. PMID 21978247.
Huang PS, Feldmeier K, Parmeggiani F, Velasco DA, Höcker B, Baker D (January 2016). "De novo design of a four-fold symmetric TIM-barrel protein with atomic-level accuracy". Nature Chemical Biology. 12 (1): 29–34. doi:10.1038/nchembio.1966. PMC 4684731. PMID 26595462.
Nagarajan D, Deka G, Rao M (August 2015). "Design of symmetric TIM barrel proteins from first principles". BMC Biochemistry. 16 (1): 18. doi:10.1186/s12858-015-0047-4. PMC 4531894. PMID 26264284.
Murzin AG, Lesk AM, Chothia C (March 1994). "Principles determining the structure of beta-sheet barrels in proteins. I. A theoretical analysis". Journal of Molecular Biology. 236 (5): 1369–81. doi:10.1016/0022-2836(94)90064-7. PMID 8126726.
Barber MJ, Neame PJ, Lim LW, White S, Matthews FS (April 1992). "Correlation of x-ray deduced and experimental amino acid sequences of trimethylamine dehydrogenase". The Journal of Biological Chemistry. 267 (10): 6611–9. doi:10.1016/S0021-9258(19)50471-9. PMID 1551870.
Forsyth WR, Bilsel O, Gu Z, Matthews CR (September 2007). "Topology and sequence in the folding of a TIM barrel protein: global analysis highlights partitioning between transient off-pathway and stable on-pathway folding intermediates in the complex folding mechanism of a (βα)8 barrel of unknown function from B. subtilis". Journal of Molecular Biology. 372 (1): 236–53. doi:10.1016/j.jmb.2007.06.018. PMID 17619021.
Carstensen L, Sperl JM, Bocola M, List F, Schmid FX, Sterner R (August 2012). "Conservation of the folding mechanism between designed primordial (βα)8-barrel proteins and their modern descendant". Journal of the American Chemical Society. 134 (30): 12786–91. doi:10.1021/ja304951v. PMID 22758610.
Gu Z, Rao MK, Forsyth WR, Finke JM, Matthews CR (November 2007). "Structural analysis of kinetic folding intermediates for a TIM barrel protein, indole-3-glycerol phosphate synthase, by hydrogen exchange mass spectrometry and Gō model simulation". Journal of Molecular Biology. 374 (2): 528–46. doi:10.1016/j.jmb.2007.09.024. PMC 2735044. PMID 17942114.
Halloran KT, Wang Y, Arora K, Chakravarthy S, Irving TC, Bilsel O, et al. (August 2019). "Frustration and folding of a TIM barrel protein". Proceedings of the National Academy of Sciences of the United States of America. 116 (33): 16378–16383. Bibcode:2019PNAS..11616378H. doi:10.1073/pnas.1900880116. PMC 6697809. PMID 31346089.
Chan YH, Venev SV, Zeldovich KB, Matthews CR (March 2017). "Correlation of fitness landscapes from three orthologous TIM barrels originates from sequence and structure constraints". Nature Communications. 8: 14614. Bibcode:2017NatCo...814614C. doi:10.1038/ncomms14614. PMC 5343507. PMID 28262665.
Hietpas RT, Jensen JD, Bolon DN (May 2011). "Experimental illumination of a fitness landscape". Proceedings of the National Academy of Sciences of the United States of America. 108 (19): 7896–901. doi:10.1073/pnas.1016024108. PMC 3093508. PMID 21464309.
Ochoa-Leyva A, Soberón X, Sánchez F, Argüello M, Montero-Morán G, Saab-Rincón G (April 2009). "Protein design through systematic catalytic loop exchange in the (beta/alpha)8 fold". Journal of Molecular Biology. 387 (4): 949–64. doi:10.1016/j.jmb.2009.02.022. PMID 19233201.
Ochoa-Leyva A, Barona-Gómez F, Saab-Rincón G, Verdel-Aranda K, Sánchez F, Soberón X (August 2011). "Exploring the Structure-Function Loop Adaptability of a (β/α)(8)-Barrel Enzyme through Loop Swapping and Hinge Variability". Journal of Molecular Biology. 411 (1): 143–57. doi:10.1016/j.jmb.2011.05.027. PMID 21635898.
Copley RR, Bork P (November 2000). "Homology among (βα)(8) barrels: implications for the evolution of metabolic pathways". Journal of Molecular Biology. 303 (4): 627–41. doi:10.1006/jmbi.2000.4152. PMID 11054297.
Wymer N, Buchanan LV, Henderson D, Mehta N, Botting CH, Pocivavsek L, et al. (January 2001). "Directed evolution of a new catalytic site in 2-keto-3-deoxy-6-phosphogluconate aldolase from Escherichia coli". Structure. 9 (1): 1–9. doi:10.1016/S0969-2126(00)00555-4. PMID 11342129.
Goraj K, Renard A, Martial JA (March 1990). "Synthesis, purification and initial structural characterization of octarellin, a de novo polypeptide modelled on the alpha/beta-barrel proteins". Protein Engineering. 3 (4): 259–66. doi:10.1093/protein/3.4.259. PMID 2188263.
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