Transcription (biology) (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Transcription (biology)" in English language version.

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92nih.gov

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58doi.org

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14harvard.edu

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10semanticscholar.org

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3books.google.com

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3web.archive.org

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2worldcat.org

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1sdsu.edu

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1sigmaaldrich.com

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1nobelprize.org

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1dissercat.com

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books.google.com

Clark, David P. (2005-06-24). Molecular Biology. Elsevier. p. 134. ISBN 978-0-08-045421-4.
Milo, Ron; Philips, Rob (2015). "4. Rates and Duration: Central dogma: Which is faster:transcription or translation?". Cell Biology by the Numbers. CRC Press. pp. 231–6. ISBN 978-1-317-23069-4. OCLC 1105558425.
Clark, David P. (2005-06-24). Molecular Biology. Elsevier. p. 63. ISBN 978-0-08-045421-4.

dissercat.com

Kolesnikova IN (2000). "Some patterns of apoptosis mechanism during HIV-infection". Dissertation (in Russian). Archived from the original on July 10, 2011. Retrieved February 20, 2011.

doi.org

Koonin EV, Gorbalenya AE, Chumakov KM (July 1989). "Tentative identification of RNA-dependent RNA polymerases of dsRNA viruses and their relationship to positive strand RNA viral polymerases". FEBS Letters. 252 (1–2): 42–6. Bibcode:1989FEBSL.252...42K. doi:10.1016/0014-5793(89)80886-5. PMID 2759231. S2CID 36482110.
Haberle V, Stark A (October 2018). "Eukaryotic core promoters and the functional basis of transcription initiation". Nat Rev Mol Cell Biol. 19 (10): 621–637. doi:10.1038/s41580-018-0028-8. PMC 6205604. PMID 29946135.
Verheul TC, van Hijfte L, Perenthaler E, Barakat TS (2020). "The Why of YY1: Mechanisms of Transcriptional Regulation by Yin Yang 1". Front Cell Dev Biol. 8: 592164. doi:10.3389/fcell.2020.592164. PMC 7554316. PMID 33102493.
Spitz F, Furlong EE (September 2012). "Transcription factors: from enhancer binding to developmental control". Nat Rev Genet. 13 (9): 613–26. doi:10.1038/nrg3207. PMID 22868264. S2CID 205485256.
Beagan JA, Pastuzyn ED, Fernandez LR, Guo MH, Feng K, Titus KR, Chandrashekar H, Shepherd JD, Phillips-Cremins JE (June 2020). "Three-dimensional genome restructuring across timescales of activity-induced neuronal gene expression". Nat Neurosci. 23 (6): 707–717. doi:10.1038/s41593-020-0634-6. PMC 7558717. PMID 32451484.
Schoenfelder S, Fraser P (August 2019). "Long-range enhancer-promoter contacts in gene expression control". Nat Rev Genet. 20 (8): 437–455. doi:10.1038/s41576-019-0128-0. PMID 31086298. S2CID 152283312.
Pennacchio LA, Bickmore W, Dean A, Nobrega MA, Bejerano G (April 2013). "Enhancers: five essential questions". Nat Rev Genet. 14 (4): 288–95. doi:10.1038/nrg3458. PMC 4445073. PMID 23503198.
Weintraub AS, Li CH, Zamudio AV, Sigova AA, Hannett NM, Day DS, Abraham BJ, Cohen MA, Nabet B, Buckley DL, Guo YE, Hnisz D, Jaenisch R, Bradner JE, Gray NS, Young RA (December 2017). "YY1 Is a Structural Regulator of Enhancer-Promoter Loops". Cell. 171 (7): 1573–88.e28. doi:10.1016/j.cell.2017.11.008. PMC 5785279. PMID 29224777.
Lambert SA, Jolma A, Campitelli LF, Das PK, Yin Y, Albu M, Chen X, Taipale J, Hughes TR, Weirauch MT (February 2018). "The Human Transcription Factors". Cell. 172 (4): 650–665. doi:10.1016/j.cell.2018.01.029. PMID 29425488.
Grossman SR, Engreitz J, Ray JP, Nguyen TH, Hacohen N, Lander ES (July 2018). "Positional specificity of different transcription factor classes within enhancers". Proc Natl Acad Sci U S A. 115 (30): E7222–30. Bibcode:2018PNAS..115E7222G. doi:10.1073/pnas.1804663115. PMC 6065035. PMID 29987030.
Allen BL, Taatjes DJ (March 2015). "The Mediator complex: a central integrator of transcription". Nat Rev Mol Cell Biol. 16 (3): 155–66. doi:10.1038/nrm3951. PMC 4963239. PMID 25693131.
Mikhaylichenko O, Bondarenko V, Harnett D, Schor IE, Males M, Viales RR, Furlong EE (January 2018). "The degree of enhancer or promoter activity is reflected by the levels and directionality of eRNA transcription". Genes Dev. 32 (1): 42–57. doi:10.1101/gad.308619.117. PMC 5828394. PMID 29378788.
Li QJ, Yang SH, Maeda Y, Sladek FM, Sharrocks AD, Martins-Green M (January 2003). "MAP kinase phosphorylation-dependent activation of Elk-1 leads to activation of the co-activator p300". EMBO J. 22 (2): 281–91. doi:10.1093/emboj/cdg028. PMC 140103. PMID 12514134.
Carullo NV, Phillips I RA, Simon RC, Soto SA, Hinds JE, Salisbury AJ, Revanna JS, Bunner KD, Ianov L, Sultan FA, Savell KE, Gersbach CA, Day JJ (September 2020). "Enhancer RNAs predict enhancer-gene regulatory links and are critical for enhancer function in neuronal systems". Nucleic Acids Res. 48 (17): 9550–70. doi:10.1093/nar/gkaa671. PMC 7515708. PMID 32810208.
Lövkvist C, Dodd IB, Sneppen K, Haerter JO (June 2016). "DNA methylation in human epigenomes depends on local topology of CpG sites". Nucleic Acids Res. 44 (11): 5123–32. doi:10.1093/nar/gkw124. PMC 4914085. PMID 26932361.
Jabbari K, Bernardi G (May 2004). "Cytosine methylation and CpG, TpG (CpA) and TpA frequencies". Gene. 333: 143–9. doi:10.1016/j.gene.2004.02.043. PMID 15177689.
Steinhaus R, Gonzalez T, Seelow D, Robinson PN (June 2020). "Pervasive and CpG-dependent promoter-like characteristics of transcribed enhancers". Nucleic Acids Res. 48 (10): 5306–17. doi:10.1093/nar/gkaa223. PMC 7261191. PMID 32338759.
Bird A (January 2002). "DNA methylation patterns and epigenetic memory". Genes Dev. 16 (1): 6–21. doi:10.1101/gad.947102. PMID 11782440.
Du Q, Luu PL, Stirzaker C, Clark SJ (2015). "Methyl-CpG-binding domain proteins: readers of the epigenome". Epigenomics. 7 (6): 1051–73. doi:10.2217/epi.15.39. PMID 25927341.
Vaquerizas JM, Kummerfeld SK, Teichmann SA, Luscombe NM (April 2009). "A census of human transcription factors: function, expression and evolution". Nat. Rev. Genet. 10 (4): 252–63. doi:10.1038/nrg2538. PMID 19274049. S2CID 3207586.
Sun Z, Xu X, He J, Murray A, Sun MA, Wei X, Wang X, McCoig E, Xie E, Jiang X, Li L, Zhu J, Chen J, Morozov A, Pickrell AM, Theus MH, Xie H (August 2019). "EGR1 recruits TET1 to shape the brain methylome during development and upon neuronal activity". Nat Commun. 10 (1): 3892. Bibcode:2019NatCo..10.3892S. doi:10.1038/s41467-019-11905-3. PMC 6715719. PMID 31467272.
Kubosaki A, Tomaru Y, Tagami M, Arner E, Miura H, Suzuki T, Suzuki M, Suzuki H, Hayashizaki Y (2009). "Genome-wide investigation of in vivo EGR-1 binding sites in monocytic differentiation". Genome Biol. 10 (4): R41. doi:10.1186/gb-2009-10-4-r41. PMC 2688932. PMID 19374776.
Bayraktar G, Kreutz MR (April 2018). "Neuronal DNA Methyltransferases: Epigenetic Mediators between Synaptic Activity and Gene Expression?". Neuroscientist. 24 (2): 171–185. doi:10.1177/1073858417707457. PMC 5846851. PMID 28513272.
Oliveira AM, Hemstedt TJ, Bading H (July 2012). "Rescue of aging-associated decline in Dnmt3a2 expression restores cognitive abilities". Nat Neurosci. 15 (8): 1111–3. doi:10.1038/nn.3151. PMID 22751036. S2CID 10590208.
Dhayalan A, Rajavelu A, Rathert P, Tamas R, Jurkowska RZ, Ragozin S, Jeltsch A (August 2010). "The Dnmt3a PWWP domain reads histone 3 lysine 36 trimethylation and guides DNA methylation". J Biol Chem. 285 (34): 26114–20. doi:10.1074/jbc.M109.089433. PMC 2924014. PMID 20547484.
Manzo M, Wirz J, Ambrosi C, Villaseñor R, Roschitzki B, Baubec T (December 2017). "Isoform-specific localization of DNMT3A regulates DNA methylation fidelity at bivalent CpG islands". EMBO J. 36 (23): 3421–34. doi:10.15252/embj.201797038. PMC 5709737. PMID 29074627.
Dukatz M, Holzer K, Choudalakis M, Emperle M, Lungu C, Bashtrykov P, Jeltsch A (December 2019). "H3K36me2/3 Binding and DNA Binding of the DNA Methyltransferase DNMT3A PWWP Domain Both Contribute to its Chromatin Interaction". J Mol Biol. 431 (24): 5063–74. doi:10.1016/j.jmb.2019.09.006. PMID 31634469. S2CID 204832601.
Bayraktar G, Yuanxiang P, Confettura AD, Gomes GM, Raza SA, Stork O, Tajima S, Suetake I, Karpova A, Yildirim F, Kreutz MR (November 2020). "Synaptic control of DNA methylation involves activity-dependent degradation of DNMT3A1 in the nucleus". Neuropsychopharmacology. 45 (12): 2120–30. doi:10.1038/s41386-020-0780-2. PMC 7547096. PMID 32726795.
Pakay, Julian; Duivenvoorden, Hendrika; Shafee, Thomas; Clarke, Kaitlin (2023). Threshold Concepts in Biochemistry. La Trobe eBureau. doi:10.26826/1017. ISBN 978-0-6484681-9-6. S2CID 258899183.
Boutard, Magali (2016). "Global repositioning of transcription start sites in a plant-fermenting bacterium". Nature Communications. 7: 13783. Bibcode:2016NatCo...713783B. doi:10.1038/ncomms13783. PMC 5171806. PMID 27982035.
Roeder, Robert G. (1991). "The complexities of eukaryotic transcription initiation: regulation of preinitiation complex assembly". Trends in Biochemical Sciences. 16 (11): 402–8. doi:10.1016/0968-0004(91)90164-Q. PMID 1776168.
Goldman SR, Ebright RH, Nickels BE (May 2009). "Direct detection of abortive RNA transcripts in vivo". Science. 324 (5929): 927–8. Bibcode:2009Sci...324..927G. doi:10.1126/science.1169237. PMC 2718712. PMID 19443781.
Revyakin A, Liu C, Ebright RH, Strick TR (November 2006). "Abortive initiation and productive initiation by RNA polymerase involve DNA scrunching". Science. 314 (5802): 1139–43. Bibcode:2006Sci...314.1139R. doi:10.1126/science.1131398. PMC 2754787. PMID 17110577.
Raffaelle M, Kanin EI, Vogt J, Burgess RR, Ansari AZ (November 2005). "Holoenzyme switching and stochastic release of sigma factors from RNA polymerase in vivo". Molecular Cell. 20 (3): 357–66. doi:10.1016/j.molcel.2005.10.011. PMID 16285918.
Mandal SS, Chu C, Wada T, Handa H, Shatkin AJ, Reinberg D (May 2004). "Functional interactions of RNA-capping enzyme with factors that positively and negatively regulate promoter escape by RNA polymerase II". Proceedings of the National Academy of Sciences of the United States of America. 101 (20): 7572–7. Bibcode:2004PNAS..101.7572M. doi:10.1073/pnas.0401493101. PMC 419647. PMID 15136722.
Goodrich JA, Tjian R (April 1994). "Transcription factors IIE and IIH and ATP hydrolysis direct promoter clearance by RNA polymerase II". Cell. 77 (1): 145–56. doi:10.1016/0092-8674(94)90242-9. PMID 8156590. S2CID 24602504.
Hodges C, Bintu L, Lubkowska L, Kashlev M, Bustamante C (July 2009). "Nucleosomal fluctuations govern the transcription dynamics of RNA polymerase II". Science. 325 (5940): 626–8. Bibcode:2009Sci...325..626H. doi:10.1126/science.1172926. PMC 2775800. PMID 19644123.
Fitz V, Shin J, Ehrlich C, Farnung L, Cramer P, Zaburdaev V, Grill SW (2016). "Nucleosomal arrangement affects single-molecule transcription dynamics". Proceedings of the National Academy of Sciences. 113 (45): 12733–12738. Bibcode:2016PNAS..11312733F. doi:10.1073/pnas.1602764113. PMC 5111697. PMID 27791062.
Aymard F, Bugler B, Schmidt CK, Guillou E, Caron P, Briois S, Iacovoni JS, Daburon V, Miller KM, Jackson SP, Legube G (April 2014). "Transcriptionally active chromatin recruits homologous recombination at DNA double-strand breaks". Nat Struct Mol Biol. 21 (4): 366–74. doi:10.1038/nsmb.2796. PMC 4300393. PMID 24658350.
Ouyang J, Yadav T, Zhang JM, Yang H, Rheinbay E, Guo H, Haber DA, Lan L, Zou L (June 2021). "RNA transcripts stimulate homologous recombination by forming DR-loops". Nature. 594 (7862): 283–8. Bibcode:2021Natur.594..283O. doi:10.1038/s41586-021-03538-8. PMC 8855348. PMID 33981036.
García-Rubio M, Huertas P, González-Barrera S, Aguilera A (October 2003). "Recombinogenic effects of DNA-damaging agents are synergistically increased by transcription in Saccharomyces cerevisiae. New insights into transcription-associated recombination". Genetics. 165 (2): 457–66. doi:10.1093/genetics/165.2.457. PMC 1462770. PMID 14573461.
Richardson JP (September 2002). "Rho-dependent termination and ATPases in transcript termination". Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression. 1577 (2): 251–260. doi:10.1016/S0167-4781(02)00456-6. PMID 12213656.
Lykke-Andersen S, Jensen TH (October 2007). "Overlapping pathways dictate termination of RNA polymerase II transcription". Biochimie. 89 (10): 1177–82. doi:10.1016/j.biochi.2007.05.007. PMID 17629387.
Shi, J; Wen, A; Zhao, M; Jin, S; You, L; Shi, Y; Dong, S; Hua, X; Zhang, Y; Feng, Y (18 November 2020). "Structural basis of Mfd-dependent transcription termination". Nucleic Acids Research. 48 (20): 11762–11772. doi:10.1093/nar/gkaa904. PMC 7672476. PMID 33068413.
Jiang, Y; Liu, M; Spencer, CA; Price, DH (7 May 2004). "Involvement of transcription termination factor 2 in mitotic repression of transcription elongation". Molecular Cell. 14 (3): 375–85. doi:10.1016/s1097-2765(04)00234-5. PMID 15125840.
Marshall, CJ; Qayyum, MZ; Walker, JE; Murakami, KS; Santangelo, TJ (9 August 2022). "The structure and activities of the archaeal transcription termination factor Eta detail vulnerabilities of the transcription elongation complex". Proceedings of the National Academy of Sciences of the United States of America. 119 (32): e2207581119. Bibcode:2022PNAS..11907581M. doi:10.1073/pnas.2207581119. PMC 9371683. PMID 35917344.
Milano L, Gautam A, Caldecott KW (January 2024). "DNA damage and transcription stress". Mol Cell. 84 (1): 70–79. doi:10.1016/j.molcel.2023.11.014. PMID 38103560.
Cramer, P.; Armache, K.-J.; Baumli, S.; Benkert, S.; Brueckner, F.; Buchen, C.; Damsma, G.E.; Dengl, S.; Geiger, S.R.; Jasiak, A.J.; Jawhari, A. (June 2008). "Structure of Eukaryotic RNA Polymerases". Annual Review of Biophysics. 37 (1): 337–352. doi:10.1146/annurev.biophys.37.032807.130008. PMID 18573085.
Datan E, Minn I, Peng X, He QL, Ahn H, Yu B, Pomper MG, Liu JO (2020). "A Glucose-Triptolide Conjugate Selectively Targets Cancer Cells under Hypoxia". iScience. 23 (9): 101536. Bibcode:2020iSci...23j1536D. doi:10.1016/j.isci.2020.101536. PMC 7509213. PMID 33083765.
Saxonov S, Berg P, Brutlag DL (January 2006). "A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters". Proceedings of the National Academy of Sciences of the United States of America. 103 (5): 1412–7. Bibcode:2006PNAS..103.1412S. doi:10.1073/pnas.0510310103. PMC 1345710. PMID 16432200.
Bird A (January 2002). "DNA methylation patterns and epigenetic memory". Genes & Development. 16 (1): 6–21. doi:10.1101/gad.947102. PMID 11782440.
Vogelstein B, Papadopoulos N, Velculescu VE, Zhou S, Diaz LA, Kinzler KW (March 2013). "Cancer genome landscapes". Science. 339 (6127): 1546–58. Bibcode:2013Sci...339.1546V. doi:10.1126/science.1235122. PMC 3749880. PMID 23539594.
Tessitore A, Cicciarelli G, Del Vecchio F, Gaggiano A, Verzella D, Fischietti M, Vecchiotti D, Capece D, Zazzeroni F, Alesse E (2014). "MicroRNAs in the DNA Damage/Repair Network and Cancer". International Journal of Genomics. 2014: 820248. doi:10.1155/2014/820248. PMC 3926391. PMID 24616890.
Papantonis A, Kohro T, Baboo S, Larkin JD, Deng B, Short P, Tsutsumi S, Taylor S, Kanki Y, Kobayashi M, Li G, Poh HM, Ruan X, Aburatani H, Ruan Y, Kodama T, Wada Y, Cook PR (November 2012). "TNFα signals through specialized factories where responsive coding and miRNA genes are transcribed". The EMBO Journal. 31 (23): 4404–14. CiteSeerX 10.1.1.919.1919. doi:10.1038/emboj.2012.288. PMC 3512387. PMID 23103767.
Wu, T (April 2020). "Kethoxal-assisted single-stranded DNA sequencing captures global transcription dynamics and enhancer activity in situ". Nature Methods. 17 (5): 515–523. doi:10.1038/s41592-020-0797-9. PMC 7205578. PMID 32251394. S2CID 214810294.
Raj A, van Oudenaarden A (October 2008). "Nature, nurture, or chance: stochastic gene expression and its consequences". Cell. 135 (2): 216–26. doi:10.1016/j.cell.2008.09.050. PMC 3118044. PMID 18957198.
Cesare AJ, Reddel RR (May 2010). "Alternative lengthening of telomeres: models, mechanisms and implications". Nature Reviews Genetics. 11 (5): 319–30. doi:10.1038/nrg2763. PMID 20351727. S2CID 19224032.

dx.doi.org

Cramer, P.; Armache, K.-J.; Baumli, S.; Benkert, S.; Brueckner, F.; Buchen, C.; Damsma, G.E.; Dengl, S.; Geiger, S.R.; Jasiak, A.J.; Jawhari, A. (June 2008). "Structure of Eukaryotic RNA Polymerases". Annual Review of Biophysics. 37 (1): 337–352. doi:10.1146/annurev.biophys.37.032807.130008. PMID 18573085.

harvard.edu

ui.adsabs.harvard.edu

Koonin EV, Gorbalenya AE, Chumakov KM (July 1989). "Tentative identification of RNA-dependent RNA polymerases of dsRNA viruses and their relationship to positive strand RNA viral polymerases". FEBS Letters. 252 (1–2): 42–6. Bibcode:1989FEBSL.252...42K. doi:10.1016/0014-5793(89)80886-5. PMID 2759231. S2CID 36482110.
Grossman SR, Engreitz J, Ray JP, Nguyen TH, Hacohen N, Lander ES (July 2018). "Positional specificity of different transcription factor classes within enhancers". Proc Natl Acad Sci U S A. 115 (30): E7222–30. Bibcode:2018PNAS..115E7222G. doi:10.1073/pnas.1804663115. PMC 6065035. PMID 29987030.
Sun Z, Xu X, He J, Murray A, Sun MA, Wei X, Wang X, McCoig E, Xie E, Jiang X, Li L, Zhu J, Chen J, Morozov A, Pickrell AM, Theus MH, Xie H (August 2019). "EGR1 recruits TET1 to shape the brain methylome during development and upon neuronal activity". Nat Commun. 10 (1): 3892. Bibcode:2019NatCo..10.3892S. doi:10.1038/s41467-019-11905-3. PMC 6715719. PMID 31467272.
Boutard, Magali (2016). "Global repositioning of transcription start sites in a plant-fermenting bacterium". Nature Communications. 7: 13783. Bibcode:2016NatCo...713783B. doi:10.1038/ncomms13783. PMC 5171806. PMID 27982035.
Goldman SR, Ebright RH, Nickels BE (May 2009). "Direct detection of abortive RNA transcripts in vivo". Science. 324 (5929): 927–8. Bibcode:2009Sci...324..927G. doi:10.1126/science.1169237. PMC 2718712. PMID 19443781.
Revyakin A, Liu C, Ebright RH, Strick TR (November 2006). "Abortive initiation and productive initiation by RNA polymerase involve DNA scrunching". Science. 314 (5802): 1139–43. Bibcode:2006Sci...314.1139R. doi:10.1126/science.1131398. PMC 2754787. PMID 17110577.
Mandal SS, Chu C, Wada T, Handa H, Shatkin AJ, Reinberg D (May 2004). "Functional interactions of RNA-capping enzyme with factors that positively and negatively regulate promoter escape by RNA polymerase II". Proceedings of the National Academy of Sciences of the United States of America. 101 (20): 7572–7. Bibcode:2004PNAS..101.7572M. doi:10.1073/pnas.0401493101. PMC 419647. PMID 15136722.
Hodges C, Bintu L, Lubkowska L, Kashlev M, Bustamante C (July 2009). "Nucleosomal fluctuations govern the transcription dynamics of RNA polymerase II". Science. 325 (5940): 626–8. Bibcode:2009Sci...325..626H. doi:10.1126/science.1172926. PMC 2775800. PMID 19644123.
Fitz V, Shin J, Ehrlich C, Farnung L, Cramer P, Zaburdaev V, Grill SW (2016). "Nucleosomal arrangement affects single-molecule transcription dynamics". Proceedings of the National Academy of Sciences. 113 (45): 12733–12738. Bibcode:2016PNAS..11312733F. doi:10.1073/pnas.1602764113. PMC 5111697. PMID 27791062.
Ouyang J, Yadav T, Zhang JM, Yang H, Rheinbay E, Guo H, Haber DA, Lan L, Zou L (June 2021). "RNA transcripts stimulate homologous recombination by forming DR-loops". Nature. 594 (7862): 283–8. Bibcode:2021Natur.594..283O. doi:10.1038/s41586-021-03538-8. PMC 8855348. PMID 33981036.
Marshall, CJ; Qayyum, MZ; Walker, JE; Murakami, KS; Santangelo, TJ (9 August 2022). "The structure and activities of the archaeal transcription termination factor Eta detail vulnerabilities of the transcription elongation complex". Proceedings of the National Academy of Sciences of the United States of America. 119 (32): e2207581119. Bibcode:2022PNAS..11907581M. doi:10.1073/pnas.2207581119. PMC 9371683. PMID 35917344.
Datan E, Minn I, Peng X, He QL, Ahn H, Yu B, Pomper MG, Liu JO (2020). "A Glucose-Triptolide Conjugate Selectively Targets Cancer Cells under Hypoxia". iScience. 23 (9): 101536. Bibcode:2020iSci...23j1536D. doi:10.1016/j.isci.2020.101536. PMC 7509213. PMID 33083765.
Saxonov S, Berg P, Brutlag DL (January 2006). "A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters". Proceedings of the National Academy of Sciences of the United States of America. 103 (5): 1412–7. Bibcode:2006PNAS..103.1412S. doi:10.1073/pnas.0510310103. PMC 1345710. PMID 16432200.
Vogelstein B, Papadopoulos N, Velculescu VE, Zhou S, Diaz LA, Kinzler KW (March 2013). "Cancer genome landscapes". Science. 339 (6127): 1546–58. Bibcode:2013Sci...339.1546V. doi:10.1126/science.1235122. PMC 3749880. PMID 23539594.

nih.gov

pubmed.ncbi.nlm.nih.gov

Koonin EV, Gorbalenya AE, Chumakov KM (July 1989). "Tentative identification of RNA-dependent RNA polymerases of dsRNA viruses and their relationship to positive strand RNA viral polymerases". FEBS Letters. 252 (1–2): 42–6. Bibcode:1989FEBSL.252...42K. doi:10.1016/0014-5793(89)80886-5. PMID 2759231. S2CID 36482110.
Haberle V, Stark A (October 2018). "Eukaryotic core promoters and the functional basis of transcription initiation". Nat Rev Mol Cell Biol. 19 (10): 621–637. doi:10.1038/s41580-018-0028-8. PMC 6205604. PMID 29946135.
Verheul TC, van Hijfte L, Perenthaler E, Barakat TS (2020). "The Why of YY1: Mechanisms of Transcriptional Regulation by Yin Yang 1". Front Cell Dev Biol. 8: 592164. doi:10.3389/fcell.2020.592164. PMC 7554316. PMID 33102493.
Spitz F, Furlong EE (September 2012). "Transcription factors: from enhancer binding to developmental control". Nat Rev Genet. 13 (9): 613–26. doi:10.1038/nrg3207. PMID 22868264. S2CID 205485256.
Beagan JA, Pastuzyn ED, Fernandez LR, Guo MH, Feng K, Titus KR, Chandrashekar H, Shepherd JD, Phillips-Cremins JE (June 2020). "Three-dimensional genome restructuring across timescales of activity-induced neuronal gene expression". Nat Neurosci. 23 (6): 707–717. doi:10.1038/s41593-020-0634-6. PMC 7558717. PMID 32451484.
Schoenfelder S, Fraser P (August 2019). "Long-range enhancer-promoter contacts in gene expression control". Nat Rev Genet. 20 (8): 437–455. doi:10.1038/s41576-019-0128-0. PMID 31086298. S2CID 152283312.
Pennacchio LA, Bickmore W, Dean A, Nobrega MA, Bejerano G (April 2013). "Enhancers: five essential questions". Nat Rev Genet. 14 (4): 288–95. doi:10.1038/nrg3458. PMC 4445073. PMID 23503198.
Weintraub AS, Li CH, Zamudio AV, Sigova AA, Hannett NM, Day DS, Abraham BJ, Cohen MA, Nabet B, Buckley DL, Guo YE, Hnisz D, Jaenisch R, Bradner JE, Gray NS, Young RA (December 2017). "YY1 Is a Structural Regulator of Enhancer-Promoter Loops". Cell. 171 (7): 1573–88.e28. doi:10.1016/j.cell.2017.11.008. PMC 5785279. PMID 29224777.
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Grossman SR, Engreitz J, Ray JP, Nguyen TH, Hacohen N, Lander ES (July 2018). "Positional specificity of different transcription factor classes within enhancers". Proc Natl Acad Sci U S A. 115 (30): E7222–30. Bibcode:2018PNAS..115E7222G. doi:10.1073/pnas.1804663115. PMC 6065035. PMID 29987030.
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worldcat.org

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