Transfer-messenger RNA (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Transfer-messenger RNA" in English language version.

refsWebsite

Global rank English rank

55nih.gov

4^th place

30doi.org

2^nd place

8harvard.edu

18^th place

17^th place

4semanticscholar.org

11^th place

8^th place

2rnajournal.org

low place

1worldcat.org

5^th place

1web.archive.org

1^st place

1landesbioscience.com

low place

1janelia.org

low place

doi.org

Keiler KC (2008). "Biology of trans-translation". Annual Review of Microbiology. 62: 133–51. doi:10.1146/annurev.micro.62.081307.162948. PMID 18557701.
Ray BK, Apirion D (July 1979). "Characterization of 10S RNA: a new stable rna molecule from Escherichia coli". Molecular & General Genetics. 174 (1): 25–32. doi:10.1007/BF00433301. PMID 384159. S2CID 22699560.
Tyagi JS, Kinger AK (January 1992). "Identification of the 10Sa RNA structural gene of Mycobacterium tuberculosis". Nucleic Acids Research. 20 (1): 138. doi:10.1093/nar/20.1.138. PMC 310338. PMID 1371186.
Komine Y, Kitabatake M, Yokogawa T, Nishikawa K, Inokuchi H (September 1994). "A tRNA-like structure is present in 10Sa RNA, a small stable RNA from Escherichia coli". Proceedings of the National Academy of Sciences of the United States of America. 91 (20): 9223–7. Bibcode:1994PNAS...91.9223K. doi:10.1073/pnas.91.20.9223. PMC 44784. PMID 7524073.
Zwieb C, Wower I, Wower J (May 1999). "Comparative sequence analysis of tmRNA". Nucleic Acids Research. 27 (10): 2063–71. doi:10.1093/nar/27.10.2063. PMC 148424. PMID 10219077.
Andersen ES, Lind-Thomsen A, Knudsen B, Kristensen SE, Havgaard JH, Torarinsson E, Larsen N, Zwieb C, Sestoft P, Kjems J, Gorodkin J (November 2007). "Semiautomated improvement of RNA alignments". RNA. 13 (11): 1850–9. doi:10.1261/rna.215407. PMC 2040093. PMID 17804647.
Gur E, Sauer RT (October 2008). "Evolution of the ssrA degradation tag in Mycoplasma: specificity switch to a different protease". Proceedings of the National Academy of Sciences of the United States of America. 105 (42): 16113–8. Bibcode:2008PNAS..10516113G. doi:10.1073/pnas.0808802105. PMC 2570983. PMID 18852454.
Wower IK, Zwieb C, Wower J (May 2005). "Transfer-messenger RNA unfolds as it transits the ribosome". RNA. 11 (5): 668–73. doi:10.1261/rna.7269305. PMC 1370753. PMID 15811920.
Keiler KC, Shapiro L, Williams KP (July 2000). "tmRNAs that encode proteolysis-inducing tags are found in all known bacterial genomes: A two-piece tmRNA functions in Caulobacter". Proceedings of the National Academy of Sciences of the United States of America. 97 (14): 7778–83. Bibcode:2000PNAS...97.7778K. doi:10.1073/pnas.97.14.7778. PMC 16621. PMID 10884408.
Sharkady SM, Williams KP (2004). "A third lineage with two-piece tmRNA". Nucleic Acids Research. 32 (15): 4531–8. doi:10.1093/nar/gkh795. PMC 516066. PMID 15326226.
Jacob Y, Seif E, Paquet PO, Lang BF (April 2004). "Loss of the mRNA-like region in mitochondrial tmRNAs of jakobids". RNA. 10 (4): 605–14. doi:10.1261/rna.5227904. PMC 1370551. PMID 15037770.
Srivastava RA, Srivastava N, Apirion D (May 1992). "Characterization of the RNA processing enzyme RNase III from wild type and overexpressing Escherichia coli cells in processing natural RNA substrates". The International Journal of Biochemistry. 24 (5): 737–49. doi:10.1016/0020-711X(92)90007-N. PMID 1375563.
Li Z, Pandit S, Deutscher MP (March 1998). "3' exoribonucleolytic trimming is a common feature of the maturation of small, stable RNAs in Escherichia coli". Proceedings of the National Academy of Sciences of the United States of America. 95 (6): 2856–61. Bibcode:1998PNAS...95.2856L. doi:10.1073/pnas.95.6.2856. PMC 19659. PMID 9501180.
Mao C, Bhardwaj K, Sharkady SM, Fish RI, Driscoll T, Wower J, Zwieb C, Sobral BW, Williams KP (2009). "Variations on the tmRNA gene". RNA Biology. 6 (4): 355–61. doi:10.4161/rna.6.4.9172. PMID 19617710.
Someya T, Nameki N, Hosoi H, Suzuki S, Hatanaka H, Fujii M, Terada T, Shirouzu M, Inoue Y, Shibata T, Kuramitsu S, Yokoyama S, Kawai G (January 2003). "Solution structure of a tmRNA-binding protein, SmpB, from Thermus thermophilus". FEBS Letters. 535 (1–3): 94–100. doi:10.1016/S0014-5793(02)03880-2. PMID 12560085.
Bessho Y, Shibata R, Sekine S, Murayama K, Higashijima K, Hori-Takemoto C, Shirouzu M, Kuramitsu S, Yokoyama S (May 2007). "Structural basis for functional mimicry of long-variable-arm tRNA by transfer-messenger RNA". Proceedings of the National Academy of Sciences of the United States of America. 104 (20): 8293–8. Bibcode:2007PNAS..104.8293B. doi:10.1073/pnas.0700402104. PMC 1895943. PMID 17488812.
Valle M, Gillet R, Kaur S, Henne A, Ramakrishnan V, Frank J (April 2003). "Visualizing tmRNA entry into a stalled ribosome". Science. 300 (5616): 127–30. Bibcode:2003Sci...300..127V. doi:10.1126/science.1081798. PMID 12677067. S2CID 28845151.
Tu GF, Reid GE, Zhang JG, Moritz RL, Simpson RJ (April 1995). "C-terminal extension of truncated recombinant proteins in Escherichia coli with a 10Sa RNA decapeptide". The Journal of Biological Chemistry. 270 (16): 9322–6. doi:10.1074/jbc.270.16.9322. PMID 7536743.
Keiler KC, Waller PR, Sauer RT (February 1996). "Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA". Science. 271 (5251): 990–3. Bibcode:1996Sci...271..990K. doi:10.1126/science.271.5251.990. PMID 8584937. S2CID 29254050.
Thibonnier M, Thiberge JM, De Reuse H (2008). Ahmed N (ed.). "Trans-translation in Helicobacter pylori: essentiality of ribosome rescue and requirement of protein tagging for stress resistance and competence". PLOS ONE. 3 (11): e3810. Bibcode:2008PLoSO...3.3810T. doi:10.1371/journal.pone.0003810. PMC 2584231. PMID 19043582.
Müller, Claudia; Crowe-McAuliffe, Caillan; Wilson, Daniel N. (2021-03-18). "Ribosome Rescue Pathways in Bacteria". Frontiers in Microbiology. 12: 652980. doi:10.3389/fmicb.2021.652980. ISSN 1664-302X. PMC 8012679. PMID 33815344.
Kirby JE, Trempy JE, Gottesman S (April 1994). "Excision of a P4-like cryptic prophage leads to Alp protease expression in Escherichia coli". Journal of Bacteriology. 176 (7): 2068–81. doi:10.1128/jb.176.7.2068-2081.1994. PMC 205313. PMID 7511583.
Williams KP (January 2002). "The tmRNA Website: invasion by an intron". Nucleic Acids Research. 30 (1): 179–82. doi:10.1093/nar/30.1.179. PMC 99078. PMID 11752287.
Dwyer DS (January 2001). "Selfish DNA and the origin of genes". Science. 291 (5502): 252–3. doi:10.1126/science.291.5502.252. PMID 11253208. S2CID 5369275.
Williams KP (February 2003). "Traffic at the tmRNA gene". Journal of Bacteriology. 185 (3): 1059–70. doi:10.1128/JB.185.3.1059-1070.2003. PMC 142792. PMID 12533482.
Hatfull GF, Pedulla ML, Jacobs-Sera D, Cichon PM, Foley A, Ford ME, Gonda RM, Houtz JM, Hryckowian AJ, Kelchner VA, Namburi S, Pajcini KV, Popovich MG, Schleicher DT, Simanek BZ, Smith AL, Zdanowicz GM, Kumar V, Peebles CL, Jacobs WR, Lawrence JG, Hendrix RW (June 2006). "Exploring the mycobacteriophage metaproteome: phage genomics as an educational platform". PLOS Genetics. 2 (6): e92. doi:10.1371/journal.pgen.0020092. PMC 1475703. PMID 16789831.
Burger G, Gray MW, Forget L, Lang BF (2013). "Strikingly bacteria-like and gene-rich mitochondrial genomes throughout jakobid protists". Genome Biology and Evolution. 5 (2): 418–38. doi:10.1093/gbe/evt008. PMC 3590771. PMID 23335123.
Hafez M, Burger G, Steinberg SV, Lang BF (July 2013). "A second eukaryotic group with mitochondrion-encoded tmRNA: in silico identification and experimental confirmation". RNA Biology. 10 (7): 1117–24. doi:10.4161/rna.25376. PMC 3849159. PMID 23823571. Archived from the original on 2014-02-21. Retrieved 2014-02-13.
Eddy SR, Durbin R (June 1994). "RNA sequence analysis using covariance models". Nucleic Acids Research. 22 (11): 2079–88. doi:10.1093/nar/22.11.2079. PMC 308124. PMID 8029015.
Nawrocki EP, Kolbe DL, Eddy SR (May 2009). "Infernal 1.0: inference of RNA alignments". Bioinformatics. 25 (10): 1335–7. doi:10.1093/bioinformatics/btp157. PMC 2732312. PMID 19307242.

harvard.edu

ui.adsabs.harvard.edu

Komine Y, Kitabatake M, Yokogawa T, Nishikawa K, Inokuchi H (September 1994). "A tRNA-like structure is present in 10Sa RNA, a small stable RNA from Escherichia coli". Proceedings of the National Academy of Sciences of the United States of America. 91 (20): 9223–7. Bibcode:1994PNAS...91.9223K. doi:10.1073/pnas.91.20.9223. PMC 44784. PMID 7524073.
Gur E, Sauer RT (October 2008). "Evolution of the ssrA degradation tag in Mycoplasma: specificity switch to a different protease". Proceedings of the National Academy of Sciences of the United States of America. 105 (42): 16113–8. Bibcode:2008PNAS..10516113G. doi:10.1073/pnas.0808802105. PMC 2570983. PMID 18852454.
Keiler KC, Shapiro L, Williams KP (July 2000). "tmRNAs that encode proteolysis-inducing tags are found in all known bacterial genomes: A two-piece tmRNA functions in Caulobacter". Proceedings of the National Academy of Sciences of the United States of America. 97 (14): 7778–83. Bibcode:2000PNAS...97.7778K. doi:10.1073/pnas.97.14.7778. PMC 16621. PMID 10884408.
Li Z, Pandit S, Deutscher MP (March 1998). "3' exoribonucleolytic trimming is a common feature of the maturation of small, stable RNAs in Escherichia coli". Proceedings of the National Academy of Sciences of the United States of America. 95 (6): 2856–61. Bibcode:1998PNAS...95.2856L. doi:10.1073/pnas.95.6.2856. PMC 19659. PMID 9501180.
Bessho Y, Shibata R, Sekine S, Murayama K, Higashijima K, Hori-Takemoto C, Shirouzu M, Kuramitsu S, Yokoyama S (May 2007). "Structural basis for functional mimicry of long-variable-arm tRNA by transfer-messenger RNA". Proceedings of the National Academy of Sciences of the United States of America. 104 (20): 8293–8. Bibcode:2007PNAS..104.8293B. doi:10.1073/pnas.0700402104. PMC 1895943. PMID 17488812.
Valle M, Gillet R, Kaur S, Henne A, Ramakrishnan V, Frank J (April 2003). "Visualizing tmRNA entry into a stalled ribosome". Science. 300 (5616): 127–30. Bibcode:2003Sci...300..127V. doi:10.1126/science.1081798. PMID 12677067. S2CID 28845151.
Keiler KC, Waller PR, Sauer RT (February 1996). "Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA". Science. 271 (5251): 990–3. Bibcode:1996Sci...271..990K. doi:10.1126/science.271.5251.990. PMID 8584937. S2CID 29254050.
Thibonnier M, Thiberge JM, De Reuse H (2008). Ahmed N (ed.). "Trans-translation in Helicobacter pylori: essentiality of ribosome rescue and requirement of protein tagging for stress resistance and competence". PLOS ONE. 3 (11): e3810. Bibcode:2008PLoSO...3.3810T. doi:10.1371/journal.pone.0003810. PMC 2584231. PMID 19043582.

janelia.org

infernal.janelia.org

Eddy, S. "Infernal website". Retrieved 14 August 2016.

landesbioscience.com

Hafez M, Burger G, Steinberg SV, Lang BF (July 2013). "A second eukaryotic group with mitochondrion-encoded tmRNA: in silico identification and experimental confirmation". RNA Biology. 10 (7): 1117–24. doi:10.4161/rna.25376. PMC 3849159. PMID 23823571. Archived from the original on 2014-02-21. Retrieved 2014-02-13.

nih.gov

pubmed.ncbi.nlm.nih.gov

Keiler KC (2008). "Biology of trans-translation". Annual Review of Microbiology. 62: 133–51. doi:10.1146/annurev.micro.62.081307.162948. PMID 18557701.
Ray BK, Apirion D (July 1979). "Characterization of 10S RNA: a new stable rna molecule from Escherichia coli". Molecular & General Genetics. 174 (1): 25–32. doi:10.1007/BF00433301. PMID 384159. S2CID 22699560.
Tyagi JS, Kinger AK (January 1992). "Identification of the 10Sa RNA structural gene of Mycobacterium tuberculosis". Nucleic Acids Research. 20 (1): 138. doi:10.1093/nar/20.1.138. PMC 310338. PMID 1371186.
Komine Y, Kitabatake M, Yokogawa T, Nishikawa K, Inokuchi H (September 1994). "A tRNA-like structure is present in 10Sa RNA, a small stable RNA from Escherichia coli". Proceedings of the National Academy of Sciences of the United States of America. 91 (20): 9223–7. Bibcode:1994PNAS...91.9223K. doi:10.1073/pnas.91.20.9223. PMC 44784. PMID 7524073.
Williams KP, Bartel DP (December 1996). "Phylogenetic analysis of tmRNA secondary structure". RNA. 2 (12): 1306–10. PMC 1369456. PMID 8972778.
Felden B, Himeno H, Muto A, McCutcheon JP, Atkins JF, Gesteland RF (January 1997). "Probing the structure of the Escherichia coli 10Sa RNA (tmRNA)". RNA. 3 (1): 89–103. PMC 1369465. PMID 8990402.
Zwieb C, Wower I, Wower J (May 1999). "Comparative sequence analysis of tmRNA". Nucleic Acids Research. 27 (10): 2063–71. doi:10.1093/nar/27.10.2063. PMC 148424. PMID 10219077.
Andersen ES, Lind-Thomsen A, Knudsen B, Kristensen SE, Havgaard JH, Torarinsson E, Larsen N, Zwieb C, Sestoft P, Kjems J, Gorodkin J (November 2007). "Semiautomated improvement of RNA alignments". RNA. 13 (11): 1850–9. doi:10.1261/rna.215407. PMC 2040093. PMID 17804647.
Gur E, Sauer RT (October 2008). "Evolution of the ssrA degradation tag in Mycoplasma: specificity switch to a different protease". Proceedings of the National Academy of Sciences of the United States of America. 105 (42): 16113–8. Bibcode:2008PNAS..10516113G. doi:10.1073/pnas.0808802105. PMC 2570983. PMID 18852454.
Wower IK, Zwieb C, Wower J (May 2005). "Transfer-messenger RNA unfolds as it transits the ribosome". RNA. 11 (5): 668–73. doi:10.1261/rna.7269305. PMC 1370753. PMID 15811920.
Keiler KC, Shapiro L, Williams KP (July 2000). "tmRNAs that encode proteolysis-inducing tags are found in all known bacterial genomes: A two-piece tmRNA functions in Caulobacter". Proceedings of the National Academy of Sciences of the United States of America. 97 (14): 7778–83. Bibcode:2000PNAS...97.7778K. doi:10.1073/pnas.97.14.7778. PMC 16621. PMID 10884408.
Sharkady SM, Williams KP (2004). "A third lineage with two-piece tmRNA". Nucleic Acids Research. 32 (15): 4531–8. doi:10.1093/nar/gkh795. PMC 516066. PMID 15326226.
Jacob Y, Seif E, Paquet PO, Lang BF (April 2004). "Loss of the mRNA-like region in mitochondrial tmRNAs of jakobids". RNA. 10 (4): 605–14. doi:10.1261/rna.5227904. PMC 1370551. PMID 15037770.
Srivastava RA, Srivastava N, Apirion D (May 1992). "Characterization of the RNA processing enzyme RNase III from wild type and overexpressing Escherichia coli cells in processing natural RNA substrates". The International Journal of Biochemistry. 24 (5): 737–49. doi:10.1016/0020-711X(92)90007-N. PMID 1375563.
Li Z, Pandit S, Deutscher MP (March 1998). "3' exoribonucleolytic trimming is a common feature of the maturation of small, stable RNAs in Escherichia coli". Proceedings of the National Academy of Sciences of the United States of America. 95 (6): 2856–61. Bibcode:1998PNAS...95.2856L. doi:10.1073/pnas.95.6.2856. PMC 19659. PMID 9501180.
Mao C, Bhardwaj K, Sharkady SM, Fish RI, Driscoll T, Wower J, Zwieb C, Sobral BW, Williams KP (2009). "Variations on the tmRNA gene". RNA Biology. 6 (4): 355–61. doi:10.4161/rna.6.4.9172. PMID 19617710.
Someya T, Nameki N, Hosoi H, Suzuki S, Hatanaka H, Fujii M, Terada T, Shirouzu M, Inoue Y, Shibata T, Kuramitsu S, Yokoyama S, Kawai G (January 2003). "Solution structure of a tmRNA-binding protein, SmpB, from Thermus thermophilus". FEBS Letters. 535 (1–3): 94–100. doi:10.1016/S0014-5793(02)03880-2. PMID 12560085.
Bessho Y, Shibata R, Sekine S, Murayama K, Higashijima K, Hori-Takemoto C, Shirouzu M, Kuramitsu S, Yokoyama S (May 2007). "Structural basis for functional mimicry of long-variable-arm tRNA by transfer-messenger RNA". Proceedings of the National Academy of Sciences of the United States of America. 104 (20): 8293–8. Bibcode:2007PNAS..104.8293B. doi:10.1073/pnas.0700402104. PMC 1895943. PMID 17488812.
Valle M, Gillet R, Kaur S, Henne A, Ramakrishnan V, Frank J (April 2003). "Visualizing tmRNA entry into a stalled ribosome". Science. 300 (5616): 127–30. Bibcode:2003Sci...300..127V. doi:10.1126/science.1081798. PMID 12677067. S2CID 28845151.
Tu GF, Reid GE, Zhang JG, Moritz RL, Simpson RJ (April 1995). "C-terminal extension of truncated recombinant proteins in Escherichia coli with a 10Sa RNA decapeptide". The Journal of Biological Chemistry. 270 (16): 9322–6. doi:10.1074/jbc.270.16.9322. PMID 7536743.
Keiler KC, Waller PR, Sauer RT (February 1996). "Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA". Science. 271 (5251): 990–3. Bibcode:1996Sci...271..990K. doi:10.1126/science.271.5251.990. PMID 8584937. S2CID 29254050.
Thibonnier M, Thiberge JM, De Reuse H (2008). Ahmed N (ed.). "Trans-translation in Helicobacter pylori: essentiality of ribosome rescue and requirement of protein tagging for stress resistance and competence". PLOS ONE. 3 (11): e3810. Bibcode:2008PLoSO...3.3810T. doi:10.1371/journal.pone.0003810. PMC 2584231. PMID 19043582.
Müller, Claudia; Crowe-McAuliffe, Caillan; Wilson, Daniel N. (2021-03-18). "Ribosome Rescue Pathways in Bacteria". Frontiers in Microbiology. 12: 652980. doi:10.3389/fmicb.2021.652980. ISSN 1664-302X. PMC 8012679. PMID 33815344.
Kirby JE, Trempy JE, Gottesman S (April 1994). "Excision of a P4-like cryptic prophage leads to Alp protease expression in Escherichia coli". Journal of Bacteriology. 176 (7): 2068–81. doi:10.1128/jb.176.7.2068-2081.1994. PMC 205313. PMID 7511583.
Williams KP (January 2002). "The tmRNA Website: invasion by an intron". Nucleic Acids Research. 30 (1): 179–82. doi:10.1093/nar/30.1.179. PMC 99078. PMID 11752287.
Dwyer DS (January 2001). "Selfish DNA and the origin of genes". Science. 291 (5502): 252–3. doi:10.1126/science.291.5502.252. PMID 11253208. S2CID 5369275.
Williams KP (February 2003). "Traffic at the tmRNA gene". Journal of Bacteriology. 185 (3): 1059–70. doi:10.1128/JB.185.3.1059-1070.2003. PMC 142792. PMID 12533482.
Hatfull GF, Pedulla ML, Jacobs-Sera D, Cichon PM, Foley A, Ford ME, Gonda RM, Houtz JM, Hryckowian AJ, Kelchner VA, Namburi S, Pajcini KV, Popovich MG, Schleicher DT, Simanek BZ, Smith AL, Zdanowicz GM, Kumar V, Peebles CL, Jacobs WR, Lawrence JG, Hendrix RW (June 2006). "Exploring the mycobacteriophage metaproteome: phage genomics as an educational platform". PLOS Genetics. 2 (6): e92. doi:10.1371/journal.pgen.0020092. PMC 1475703. PMID 16789831.
Burger G, Gray MW, Forget L, Lang BF (2013). "Strikingly bacteria-like and gene-rich mitochondrial genomes throughout jakobid protists". Genome Biology and Evolution. 5 (2): 418–38. doi:10.1093/gbe/evt008. PMC 3590771. PMID 23335123.
Hafez M, Burger G, Steinberg SV, Lang BF (July 2013). "A second eukaryotic group with mitochondrion-encoded tmRNA: in silico identification and experimental confirmation". RNA Biology. 10 (7): 1117–24. doi:10.4161/rna.25376. PMC 3849159. PMID 23823571. Archived from the original on 2014-02-21. Retrieved 2014-02-13.
Eddy SR, Durbin R (June 1994). "RNA sequence analysis using covariance models". Nucleic Acids Research. 22 (11): 2079–88. doi:10.1093/nar/22.11.2079. PMC 308124. PMID 8029015.
Nawrocki EP, Kolbe DL, Eddy SR (May 2009). "Infernal 1.0: inference of RNA alignments". Bioinformatics. 25 (10): 1335–7. doi:10.1093/bioinformatics/btp157. PMC 2732312. PMID 19307242.

ncbi.nlm.nih.gov

Tyagi JS, Kinger AK (January 1992). "Identification of the 10Sa RNA structural gene of Mycobacterium tuberculosis". Nucleic Acids Research. 20 (1): 138. doi:10.1093/nar/20.1.138. PMC 310338. PMID 1371186.
Komine Y, Kitabatake M, Yokogawa T, Nishikawa K, Inokuchi H (September 1994). "A tRNA-like structure is present in 10Sa RNA, a small stable RNA from Escherichia coli". Proceedings of the National Academy of Sciences of the United States of America. 91 (20): 9223–7. Bibcode:1994PNAS...91.9223K. doi:10.1073/pnas.91.20.9223. PMC 44784. PMID 7524073.
Williams KP, Bartel DP (December 1996). "Phylogenetic analysis of tmRNA secondary structure". RNA. 2 (12): 1306–10. PMC 1369456. PMID 8972778.
Felden B, Himeno H, Muto A, McCutcheon JP, Atkins JF, Gesteland RF (January 1997). "Probing the structure of the Escherichia coli 10Sa RNA (tmRNA)". RNA. 3 (1): 89–103. PMC 1369465. PMID 8990402.
Zwieb C, Wower I, Wower J (May 1999). "Comparative sequence analysis of tmRNA". Nucleic Acids Research. 27 (10): 2063–71. doi:10.1093/nar/27.10.2063. PMC 148424. PMID 10219077.
Andersen ES, Lind-Thomsen A, Knudsen B, Kristensen SE, Havgaard JH, Torarinsson E, Larsen N, Zwieb C, Sestoft P, Kjems J, Gorodkin J (November 2007). "Semiautomated improvement of RNA alignments". RNA. 13 (11): 1850–9. doi:10.1261/rna.215407. PMC 2040093. PMID 17804647.
Gur E, Sauer RT (October 2008). "Evolution of the ssrA degradation tag in Mycoplasma: specificity switch to a different protease". Proceedings of the National Academy of Sciences of the United States of America. 105 (42): 16113–8. Bibcode:2008PNAS..10516113G. doi:10.1073/pnas.0808802105. PMC 2570983. PMID 18852454.
Wower IK, Zwieb C, Wower J (May 2005). "Transfer-messenger RNA unfolds as it transits the ribosome". RNA. 11 (5): 668–73. doi:10.1261/rna.7269305. PMC 1370753. PMID 15811920.
Keiler KC, Shapiro L, Williams KP (July 2000). "tmRNAs that encode proteolysis-inducing tags are found in all known bacterial genomes: A two-piece tmRNA functions in Caulobacter". Proceedings of the National Academy of Sciences of the United States of America. 97 (14): 7778–83. Bibcode:2000PNAS...97.7778K. doi:10.1073/pnas.97.14.7778. PMC 16621. PMID 10884408.
Sharkady SM, Williams KP (2004). "A third lineage with two-piece tmRNA". Nucleic Acids Research. 32 (15): 4531–8. doi:10.1093/nar/gkh795. PMC 516066. PMID 15326226.
Jacob Y, Seif E, Paquet PO, Lang BF (April 2004). "Loss of the mRNA-like region in mitochondrial tmRNAs of jakobids". RNA. 10 (4): 605–14. doi:10.1261/rna.5227904. PMC 1370551. PMID 15037770.
Li Z, Pandit S, Deutscher MP (March 1998). "3' exoribonucleolytic trimming is a common feature of the maturation of small, stable RNAs in Escherichia coli". Proceedings of the National Academy of Sciences of the United States of America. 95 (6): 2856–61. Bibcode:1998PNAS...95.2856L. doi:10.1073/pnas.95.6.2856. PMC 19659. PMID 9501180.
Bessho Y, Shibata R, Sekine S, Murayama K, Higashijima K, Hori-Takemoto C, Shirouzu M, Kuramitsu S, Yokoyama S (May 2007). "Structural basis for functional mimicry of long-variable-arm tRNA by transfer-messenger RNA". Proceedings of the National Academy of Sciences of the United States of America. 104 (20): 8293–8. Bibcode:2007PNAS..104.8293B. doi:10.1073/pnas.0700402104. PMC 1895943. PMID 17488812.
Thibonnier M, Thiberge JM, De Reuse H (2008). Ahmed N (ed.). "Trans-translation in Helicobacter pylori: essentiality of ribosome rescue and requirement of protein tagging for stress resistance and competence". PLOS ONE. 3 (11): e3810. Bibcode:2008PLoSO...3.3810T. doi:10.1371/journal.pone.0003810. PMC 2584231. PMID 19043582.
Müller, Claudia; Crowe-McAuliffe, Caillan; Wilson, Daniel N. (2021-03-18). "Ribosome Rescue Pathways in Bacteria". Frontiers in Microbiology. 12: 652980. doi:10.3389/fmicb.2021.652980. ISSN 1664-302X. PMC 8012679. PMID 33815344.
Kirby JE, Trempy JE, Gottesman S (April 1994). "Excision of a P4-like cryptic prophage leads to Alp protease expression in Escherichia coli". Journal of Bacteriology. 176 (7): 2068–81. doi:10.1128/jb.176.7.2068-2081.1994. PMC 205313. PMID 7511583.
Williams KP (January 2002). "The tmRNA Website: invasion by an intron". Nucleic Acids Research. 30 (1): 179–82. doi:10.1093/nar/30.1.179. PMC 99078. PMID 11752287.
Williams KP (February 2003). "Traffic at the tmRNA gene". Journal of Bacteriology. 185 (3): 1059–70. doi:10.1128/JB.185.3.1059-1070.2003. PMC 142792. PMID 12533482.
Hatfull GF, Pedulla ML, Jacobs-Sera D, Cichon PM, Foley A, Ford ME, Gonda RM, Houtz JM, Hryckowian AJ, Kelchner VA, Namburi S, Pajcini KV, Popovich MG, Schleicher DT, Simanek BZ, Smith AL, Zdanowicz GM, Kumar V, Peebles CL, Jacobs WR, Lawrence JG, Hendrix RW (June 2006). "Exploring the mycobacteriophage metaproteome: phage genomics as an educational platform". PLOS Genetics. 2 (6): e92. doi:10.1371/journal.pgen.0020092. PMC 1475703. PMID 16789831.
Burger G, Gray MW, Forget L, Lang BF (2013). "Strikingly bacteria-like and gene-rich mitochondrial genomes throughout jakobid protists". Genome Biology and Evolution. 5 (2): 418–38. doi:10.1093/gbe/evt008. PMC 3590771. PMID 23335123.
Hafez M, Burger G, Steinberg SV, Lang BF (July 2013). "A second eukaryotic group with mitochondrion-encoded tmRNA: in silico identification and experimental confirmation". RNA Biology. 10 (7): 1117–24. doi:10.4161/rna.25376. PMC 3849159. PMID 23823571. Archived from the original on 2014-02-21. Retrieved 2014-02-13.
Eddy SR, Durbin R (June 1994). "RNA sequence analysis using covariance models". Nucleic Acids Research. 22 (11): 2079–88. doi:10.1093/nar/22.11.2079. PMC 308124. PMID 8029015.
Nawrocki EP, Kolbe DL, Eddy SR (May 2009). "Infernal 1.0: inference of RNA alignments". Bioinformatics. 25 (10): 1335–7. doi:10.1093/bioinformatics/btp157. PMC 2732312. PMID 19307242.

rnajournal.org

Williams KP, Bartel DP (December 1996). "Phylogenetic analysis of tmRNA secondary structure". RNA. 2 (12): 1306–10. PMC 1369456. PMID 8972778.
Felden B, Himeno H, Muto A, McCutcheon JP, Atkins JF, Gesteland RF (January 1997). "Probing the structure of the Escherichia coli 10Sa RNA (tmRNA)". RNA. 3 (1): 89–103. PMC 1369465. PMID 8990402.

semanticscholar.org

api.semanticscholar.org

Ray BK, Apirion D (July 1979). "Characterization of 10S RNA: a new stable rna molecule from Escherichia coli". Molecular & General Genetics. 174 (1): 25–32. doi:10.1007/BF00433301. PMID 384159. S2CID 22699560.
Valle M, Gillet R, Kaur S, Henne A, Ramakrishnan V, Frank J (April 2003). "Visualizing tmRNA entry into a stalled ribosome". Science. 300 (5616): 127–30. Bibcode:2003Sci...300..127V. doi:10.1126/science.1081798. PMID 12677067. S2CID 28845151.
Keiler KC, Waller PR, Sauer RT (February 1996). "Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA". Science. 271 (5251): 990–3. Bibcode:1996Sci...271..990K. doi:10.1126/science.271.5251.990. PMID 8584937. S2CID 29254050.
Dwyer DS (January 2001). "Selfish DNA and the origin of genes". Science. 291 (5502): 252–3. doi:10.1126/science.291.5502.252. PMID 11253208. S2CID 5369275.

web.archive.org

Hafez M, Burger G, Steinberg SV, Lang BF (July 2013). "A second eukaryotic group with mitochondrion-encoded tmRNA: in silico identification and experimental confirmation". RNA Biology. 10 (7): 1117–24. doi:10.4161/rna.25376. PMC 3849159. PMID 23823571. Archived from the original on 2014-02-21. Retrieved 2014-02-13.

worldcat.org

Müller, Claudia; Crowe-McAuliffe, Caillan; Wilson, Daniel N. (2021-03-18). "Ribosome Rescue Pathways in Bacteria". Frontiers in Microbiology. 12: 652980. doi:10.3389/fmicb.2021.652980. ISSN 1664-302X. PMC 8012679. PMID 33815344.