Triple-stranded DNA (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Triple-stranded DNA" in English language version.

refsWebsite

Global rank English rank

78nih.gov

4^th place

50doi.org

2^nd place

12harvard.edu

18^th place

17^th place

9semanticscholar.org

11^th place

8^th place

1worldcat.org

5^th place

1oregonstate.edu

2,041^st place

1,331^st place

doi.org

Rhee S, Han Z, Liu K, Miles HT, Davies DR (December 1999). "Structure of a triple helical DNA with a triplex-duplex junction". Biochemistry. 38 (51): 16810–5. doi:10.1021/bi991811m. PMID 10606513.
Mergny JL, Sun JS, Rougée M, Montenay-Garestier T, Barcelo F, Chomilier J, Hélène C (October 1991). "Sequence specificity in triple-helix formation: experimental and theoretical studies of the effect of mismatches on triplex stability". Biochemistry. 30 (40): 9791–8. doi:10.1021/bi00104a031. PMID 1911764.
Ussery DW, Sinden RR (June 1993). "Environmental influences on the in vivo level of intramolecular triplex DNA in Escherichia coli". Biochemistry. 32 (24): 6206–13. doi:10.1021/bi00075a013. PMID 8512930.
Dayn A, Samadashwily GM, Mirkin SM (December 1992). "Intramolecular DNA triplexes: unusual sequence requirements and influence on DNA polymerization". Proceedings of the National Academy of Sciences of the United States of America. 89 (23): 11406–10. Bibcode:1992PNAS...8911406D. doi:10.1073/pnas.89.23.11406. PMC 50559. PMID 1454828.
Lyamichev VI, Mirkin SM, Frank-Kamenetskii MD (February 1986). "Structures of homopurine-homopyrimidine tract in superhelical DNA". Journal of Biomolecular Structure & Dynamics. 3 (4): 667–9. doi:10.1080/07391102.1986.10508454. PMID 3271043.
Frank-Kamenetskii MD, Mirkin SM (1995-01-01). "Triplex DNA structures". Annual Review of Biochemistry. 64: 65–95. doi:10.1146/annurev.bi.64.070195.000433. PMID 7574496. S2CID 21426188.
Brázdová M, Tichý V, Helma R, Bažantová P, Polášková A, Krejčí A, et al. (2016). "p53 Specifically Binds Triplex DNA In Vitro and in Cells". PLOS ONE. 11 (12): e0167439. Bibcode:2016PLoSO..1167439B. doi:10.1371/journal.pone.0167439. PMC 5131957. PMID 27907175.
Graham MK, Brown TR, Miller PS (April 2015). "Targeting the human androgen receptor gene with platinated triplex-forming oligonucleotides". Biochemistry. 54 (13): 2270–82. doi:10.1021/bi501565n. PMID 25768916.
Carbone GM, Napoli S, Valentini A, Cavalli F, Watson DK, Catapano CV (2004-08-03). "Triplex DNA-mediated downregulation of Ets2 expression results in growth inhibition and apoptosis in human prostate cancer cells". Nucleic Acids Research. 32 (14): 4358–67. doi:10.1093/nar/gkh744. PMC 514370. PMID 15314206.
Shen C, Rattat D, Buck A, Mehrke G, Polat B, Ribbert H, et al. (February 2003). "Targeting bcl-2 by triplex-forming oligonucleotide--a promising carrier for gene-radiotherapy". Cancer Biotherapy & Radiopharmaceuticals. 18 (1): 17–26. doi:10.1089/108497803321269296. PMID 12667305.
Sakamoto N, Chastain PD, Parniewski P, Ohshima K, Pandolfo M, Griffith JD, Wells RD (April 1999). "Sticky DNA: self-association properties of long GAA.TTC repeats in R.R.Y triplex structures from Friedreich's ataxia". Molecular Cell. 3 (4): 465–75. doi:10.1016/s1097-2765(00)80474-8. PMID 10230399.
Bacolla A, Wells RD (April 2009). "Non-B DNA conformations as determinants of mutagenesis and human disease". Molecular Carcinogenesis. 48 (4): 273–85. doi:10.1002/mc.20507. PMID 19306308. S2CID 5493647.
Kaushik Tiwari M, Adaku N, Peart N, Rogers FA (September 2016). "Triplex structures induce DNA double strand breaks via replication fork collapse in NER deficient cells". Nucleic Acids Research. 44 (16): 7742–54. doi:10.1093/nar/gkw515. PMC 5027492. PMID 27298253.
Jain A, Wang G, Vasquez KM (August 2008). "DNA triple helices: biological consequences and therapeutic potential". Biochimie. 90 (8): 1117–30. doi:10.1016/j.biochi.2008.02.011. PMC 2586808. PMID 18331847.
Hansen ME, Bentin T, Nielsen PE (July 2009). "High-affinity triplex targeting of double stranded DNA using chemically modified peptide nucleic acid oligomers". Nucleic Acids Research. 37 (13): 4498–507. doi:10.1093/nar/gkp437. PMC 2715256. PMID 19474349.
Ricciardi AS, McNeer NA, Anandalingam KK, Saltzman WM, Glazer PM (2014). "Targeted genome modification via triple helix formation". In Wajapeyee N (ed.). Cancer Genomics and Proteomics. Methods in Molecular Biology. Vol. 1176. New York, NY: Springer New York. pp. 89–106. doi:10.1007/978-1-4939-0992-6_8. ISBN 978-1-4939-0991-9. PMC 5111905. PMID 25030921.
Rogers FA, Vasquez KM, Egholm M, Glazer PM (December 2002). "Site-directed recombination via bifunctional PNA-DNA conjugates". Proceedings of the National Academy of Sciences of the United States of America. 99 (26): 16695–700. Bibcode:2002PNAS...9916695R. doi:10.1073/pnas.262556899. PMC 139206. PMID 12461167.
Montazersaheb S, Hejazi MS, Nozad Charoudeh H (November 2018). "Potential of Peptide Nucleic Acids in Future Therapeutic Applications". Advanced Pharmaceutical Bulletin. 8 (4): 551–563. doi:10.15171/apb.2018.064. PMC 6311635. PMID 30607328.
Firulli AB, Maibenco DC, Kinniburgh AJ (April 1994). "Triplex forming ability of a c-myc promoter element predicts promoter strength". Archives of Biochemistry and Biophysics. 310 (1): 236–42. doi:10.1006/abbi.1994.1162. PMID 8161210.
Zain R, Sun JS (May 2003). "Do natural DNA triple-helical structures occur and function in vivo?". Cellular and Molecular Life Sciences. 60 (5): 862–70. doi:10.1007/s00018-003-3046-3. PMC 11138710. PMID 12827276. S2CID 6227195.
Kato M, Shimizu N (October 1992). "Effect of the potential triplex DNA region on the in vitro expression of bacterial beta-lactamase gene in superhelical recombinant plasmids". Journal of Biochemistry. 112 (4): 492–4. doi:10.1093/oxfordjournals.jbchem.a123927. PMID 1491004.
Potaman VN, Ussery DW, Sinden RR (June 1996). "Formation of a combined H-DNA/open TATA box structure in the promoter sequence of the human Na,K-ATPase alpha2 gene". The Journal of Biological Chemistry. 271 (23): 13441–7. doi:10.1074/jbc.271.23.13441. PMID 8662935. S2CID 46550975.
Seidman MM, Glazer PM (August 2003). "The potential for gene repair via triple helix formation". The Journal of Clinical Investigation. 112 (4): 487–94. doi:10.1172/JCI19552. PMC 171401. PMID 12925687.
Rapozzi V, Cogoi S, Spessotto P, Risso A, Bonora GM, Quadrifoglio F, Xodo LE (January 2002). "Antigene effect in K562 cells of a PEG-conjugated triplex-forming oligonucleotide targeted to the bcr/abl oncogene". Biochemistry. 41 (2): 502–10. doi:10.1021/bi011314h. PMID 11781088.
Bertucat G, Lavery R, Prévost C (December 1998). "A model for parallel triple helix formation by RecA: single-single association with a homologous duplex via the minor groove". Journal of Biomolecular Structure & Dynamics. 16 (3): 535–46. doi:10.1080/07391102.1998.10508268. PMID 10052612.
Chen J, Tang Q, Guo S, Lu C, Le S, Yan J (September 2017). "Parallel triplex structure formed between stretched single-stranded DNA and homologous duplex DNA". Nucleic Acids Research. 45 (17): 10032–10041. doi:10.1093/nar/gkx628. PMC 5622322. PMID 28973442.
Camerini-Otero RD, Hsieh P (April 1993). "Parallel DNA triplexes, homologous recombination, and other homology-dependent DNA interactions". Cell. 73 (2): 217–23. doi:10.1016/0092-8674(93)90224-e. PMID 8477443. S2CID 34585948.
Bertucat G, Lavery R, Prévost C (September 1999). "A molecular model for RecA-promoted strand exchange via parallel triple-stranded helices". Biophysical Journal. 77 (3): 1562–76. Bibcode:1999BpJ....77.1562B. doi:10.1016/S0006-3495(99)77004-9. PMC 1300444. PMID 10465767.
Yang H, Zhou C, Dhar A, Pavletich NP (October 2020). "Mechanism of strand exchange from RecA-DNA synaptic and D-loop structures". Nature. 586 (7831): 801–806. Bibcode:2020Natur.586..801Y. doi:10.1038/s41586-020-2820-9. PMC 8366275. PMID 33057191. S2CID 222349650.
McKinney JA, Wang G, Mukherjee A, Christensen L, Subramanian SH, Zhao J, Vasquez KM (January 2020). "Distinct DNA repair pathways cause genomic instability at alternative DNA structures". Nature Communications. 11 (1): 236. Bibcode:2020NatCo..11..236M. doi:10.1038/s41467-019-13878-9. PMC 6957503. PMID 31932649.
Wang G, Vasquez KM (July 2014). "Impact of alternative DNA structures on DNA damage, DNA repair, and genetic instability". DNA Repair. 19: 143–51. doi:10.1016/j.dnarep.2014.03.017. PMC 4216180. PMID 24767258.
Raghavan SC, Chastain P, Lee JS, Hegde BG, Houston S, Langen R, et al. (June 2005). "Evidence for a triplex DNA conformation at the bcl-2 major breakpoint region of the t(14;18) translocation". The Journal of Biological Chemistry. 280 (24): 22749–60. doi:10.1074/jbc.M502952200. PMID 15840562.
Wang G, Vasquez KM (September 2004). "Naturally occurring H-DNA-forming sequences are mutagenic in mammalian cells". Proceedings of the National Academy of Sciences of the United States of America. 101 (37): 13448–53. Bibcode:2004PNAS..10113448W. doi:10.1073/pnas.0405116101. PMC 518777. PMID 15342911.
Vetcher AA, Napierala M, Iyer RR, Chastain PD, Griffith JD, Wells RD (October 2002). "Sticky DNA, a long GAA.GAA.TTC triplex that is formed intramolecularly, in the sequence of intron 1 of the frataxin gene". The Journal of Biological Chemistry. 277 (42): 39217–27. doi:10.1074/jbc.M205209200. PMID 12161437.
Wang G, Vasquez KM (January 2017). "Effects of Replication and Transcription on DNA Structure-Related Genetic Instability". Genes. 8 (1): 17. doi:10.3390/genes8010017. PMC 5295012. PMID 28067787.
Zhao J, Wang G, Del Mundo IM, McKinney JA, Lu X, Bacolla A, et al. (January 2018). "Distinct Mechanisms of Nuclease-Directed DNA-Structure-Induced Genetic Instability in Cancer Genomes". Cell Reports. 22 (5): 1200–1210. doi:10.1016/j.celrep.2018.01.014. PMC 6011834. PMID 29386108.
Belotserkovskii BP, De Silva E, Tornaletti S, Wang G, Vasquez KM, Hanawalt PC (November 2007). "A triplex-forming sequence from the human c-MYC promoter interferes with DNA transcription". The Journal of Biological Chemistry. 282 (44): 32433–41. doi:10.1074/jbc.M704618200. PMID 17785457. S2CID 24211097.
Pandey S, Ogloblina AM, Belotserkovskii BP, Dolinnaya NG, Yakubovskaya MG, Mirkin SM, Hanawalt PC (August 2015). "Transcription blockage by stable H-DNA analogs in vitro". Nucleic Acids Research. 43 (14): 6994–7004. doi:10.1093/nar/gkv622. PMC 4538819. PMID 26101261.
Del Mundo IM, Zewail-Foote M, Kerwin SM, Vasquez KM (May 2017). "Alternative DNA structure formation in the mutagenic human c-MYC promoter". Nucleic Acids Research. 45 (8): 4929–4943. doi:10.1093/nar/gkx100. PMC 5416782. PMID 28334873.
McNeer NA, Schleifman EB, Cuthbert A, Brehm M, Jackson A, Cheng C, et al. (June 2013). "Systemic delivery of triplex-forming PNA and donor DNA by nanoparticles mediates site-specific genome editing of human hematopoietic cells in vivo". Gene Therapy. 20 (6): 658–69. doi:10.1038/gt.2012.82. PMC 3713483. PMID 23076379.
Hnedzko D, Cheruiyot SK, Rozners E (September 2014). "Using triple-helix-forming Peptide nucleic acids for sequence-selective recognition of double-stranded RNA". Current Protocols in Nucleic Acid Chemistry. 58: 4.60.1–23. doi:10.1002/0471142700.nc0460s58. ISSN 1934-9270. PMC 4174339. PMID 25199637.
Schleifman EB, Bindra R, Leif J, del Campo J, Rogers FA, Uchil P, et al. (September 2011). "Targeted disruption of the CCR5 gene in human hematopoietic stem cells stimulated by peptide nucleic acids". Chemistry & Biology. 18 (9): 1189–98. doi:10.1016/j.chembiol.2011.07.010. PMC 3183429. PMID 21944757.
McNeer NA, Anandalingam K, Fields RJ, Caputo C, Kopic S, Gupta A, et al. (April 2015). "Nanoparticles that deliver triplex-forming peptide nucleic acid molecules correct F508del CFTR in airway epithelium". Nature Communications. 6 (1): 6952. Bibcode:2015NatCo...6.6952M. doi:10.1038/ncomms7952. PMC 4480796. PMID 25914116.
Lukacs GL, Verkman AS (February 2012). "CFTR: folding, misfolding and correcting the ΔF508 conformational defect". Trends in Molecular Medicine. 18 (2): 81–91. doi:10.1016/j.molmed.2011.10.003. PMC 3643519. PMID 22138491.
Pauling L, Corey RB (February 1953). "A Proposed Structure For The Nucleic Acids". Proceedings of the National Academy of Sciences of the United States of America. 39 (2): 84–97. Bibcode:1953PNAS...39...84P. doi:10.1073/pnas.39.2.84. PMC 1063734. PMID 16578429.
Pauling L, Corey RB (February 1953). "Structure of the nucleic acids". Nature. 171 (4347): 346. Bibcode:1953Natur.171..346P. doi:10.1038/171346a0. PMID 13036888. S2CID 4151877.
Fraser RD (March 2004). "The structure of deoxyribose nucleic acid". Journal of Structural Biology. 145 (3): 184–5. doi:10.1016/j.jsb.2004.01.001. PMID 14997898.
Felsenfeld G, Davies DR, Rich A (April 1957). "Formation of a three-stranded polynucleotide molecule". Journal of the American Chemical Society. 79 (8): 2023–4. doi:10.1021/ja01565a074.
Hanvey JC, Shimizu M, Wells RD (September 1988). "Intramolecular DNA triplexes in supercoiled plasmids". Proceedings of the National Academy of Sciences of the United States of America. 85 (17): 6292–6. Bibcode:1988PNAS...85.6292H. doi:10.1073/pnas.85.17.6292. PMC 281955. PMID 3413097.
Mirkin SM, Lyamichev VI, Drushlyak KN, Dobrynin VN, Filippov SA, Frank-Kamenetskii MD (December 1987). "DNA H form requires a homopurine-homopyrimidine mirror repeat". Nature. 330 (6147): 495–7. Bibcode:1987Natur.330..495M. doi:10.1038/330495a0. PMID 2825028. S2CID 4360764.

harvard.edu

ui.adsabs.harvard.edu

Dayn A, Samadashwily GM, Mirkin SM (December 1992). "Intramolecular DNA triplexes: unusual sequence requirements and influence on DNA polymerization". Proceedings of the National Academy of Sciences of the United States of America. 89 (23): 11406–10. Bibcode:1992PNAS...8911406D. doi:10.1073/pnas.89.23.11406. PMC 50559. PMID 1454828.
Brázdová M, Tichý V, Helma R, Bažantová P, Polášková A, Krejčí A, et al. (2016). "p53 Specifically Binds Triplex DNA In Vitro and in Cells". PLOS ONE. 11 (12): e0167439. Bibcode:2016PLoSO..1167439B. doi:10.1371/journal.pone.0167439. PMC 5131957. PMID 27907175.
Rogers FA, Vasquez KM, Egholm M, Glazer PM (December 2002). "Site-directed recombination via bifunctional PNA-DNA conjugates". Proceedings of the National Academy of Sciences of the United States of America. 99 (26): 16695–700. Bibcode:2002PNAS...9916695R. doi:10.1073/pnas.262556899. PMC 139206. PMID 12461167.
Bertucat G, Lavery R, Prévost C (September 1999). "A molecular model for RecA-promoted strand exchange via parallel triple-stranded helices". Biophysical Journal. 77 (3): 1562–76. Bibcode:1999BpJ....77.1562B. doi:10.1016/S0006-3495(99)77004-9. PMC 1300444. PMID 10465767.
Yang H, Zhou C, Dhar A, Pavletich NP (October 2020). "Mechanism of strand exchange from RecA-DNA synaptic and D-loop structures". Nature. 586 (7831): 801–806. Bibcode:2020Natur.586..801Y. doi:10.1038/s41586-020-2820-9. PMC 8366275. PMID 33057191. S2CID 222349650.
McKinney JA, Wang G, Mukherjee A, Christensen L, Subramanian SH, Zhao J, Vasquez KM (January 2020). "Distinct DNA repair pathways cause genomic instability at alternative DNA structures". Nature Communications. 11 (1): 236. Bibcode:2020NatCo..11..236M. doi:10.1038/s41467-019-13878-9. PMC 6957503. PMID 31932649.
Wang G, Vasquez KM (September 2004). "Naturally occurring H-DNA-forming sequences are mutagenic in mammalian cells". Proceedings of the National Academy of Sciences of the United States of America. 101 (37): 13448–53. Bibcode:2004PNAS..10113448W. doi:10.1073/pnas.0405116101. PMC 518777. PMID 15342911.
McNeer NA, Anandalingam K, Fields RJ, Caputo C, Kopic S, Gupta A, et al. (April 2015). "Nanoparticles that deliver triplex-forming peptide nucleic acid molecules correct F508del CFTR in airway epithelium". Nature Communications. 6 (1): 6952. Bibcode:2015NatCo...6.6952M. doi:10.1038/ncomms7952. PMC 4480796. PMID 25914116.
Pauling L, Corey RB (February 1953). "A Proposed Structure For The Nucleic Acids". Proceedings of the National Academy of Sciences of the United States of America. 39 (2): 84–97. Bibcode:1953PNAS...39...84P. doi:10.1073/pnas.39.2.84. PMC 1063734. PMID 16578429.
Pauling L, Corey RB (February 1953). "Structure of the nucleic acids". Nature. 171 (4347): 346. Bibcode:1953Natur.171..346P. doi:10.1038/171346a0. PMID 13036888. S2CID 4151877.
Hanvey JC, Shimizu M, Wells RD (September 1988). "Intramolecular DNA triplexes in supercoiled plasmids". Proceedings of the National Academy of Sciences of the United States of America. 85 (17): 6292–6. Bibcode:1988PNAS...85.6292H. doi:10.1073/pnas.85.17.6292. PMC 281955. PMID 3413097.
Mirkin SM, Lyamichev VI, Drushlyak KN, Dobrynin VN, Filippov SA, Frank-Kamenetskii MD (December 1987). "DNA H form requires a homopurine-homopyrimidine mirror repeat". Nature. 330 (6147): 495–7. Bibcode:1987Natur.330..495M. doi:10.1038/330495a0. PMID 2825028. S2CID 4360764.

nih.gov

pubmed.ncbi.nlm.nih.gov

Rhee S, Han Z, Liu K, Miles HT, Davies DR (December 1999). "Structure of a triple helical DNA with a triplex-duplex junction". Biochemistry. 38 (51): 16810–5. doi:10.1021/bi991811m. PMID 10606513.
Mergny JL, Sun JS, Rougée M, Montenay-Garestier T, Barcelo F, Chomilier J, Hélène C (October 1991). "Sequence specificity in triple-helix formation: experimental and theoretical studies of the effect of mismatches on triplex stability". Biochemistry. 30 (40): 9791–8. doi:10.1021/bi00104a031. PMID 1911764.
Ussery DW, Sinden RR (June 1993). "Environmental influences on the in vivo level of intramolecular triplex DNA in Escherichia coli". Biochemistry. 32 (24): 6206–13. doi:10.1021/bi00075a013. PMID 8512930.
Dayn A, Samadashwily GM, Mirkin SM (December 1992). "Intramolecular DNA triplexes: unusual sequence requirements and influence on DNA polymerization". Proceedings of the National Academy of Sciences of the United States of America. 89 (23): 11406–10. Bibcode:1992PNAS...8911406D. doi:10.1073/pnas.89.23.11406. PMC 50559. PMID 1454828.
Lyamichev VI, Mirkin SM, Frank-Kamenetskii MD (February 1986). "Structures of homopurine-homopyrimidine tract in superhelical DNA". Journal of Biomolecular Structure & Dynamics. 3 (4): 667–9. doi:10.1080/07391102.1986.10508454. PMID 3271043.
Frank-Kamenetskii MD, Mirkin SM (1995-01-01). "Triplex DNA structures". Annual Review of Biochemistry. 64: 65–95. doi:10.1146/annurev.bi.64.070195.000433. PMID 7574496. S2CID 21426188.
Brázdová M, Tichý V, Helma R, Bažantová P, Polášková A, Krejčí A, et al. (2016). "p53 Specifically Binds Triplex DNA In Vitro and in Cells". PLOS ONE. 11 (12): e0167439. Bibcode:2016PLoSO..1167439B. doi:10.1371/journal.pone.0167439. PMC 5131957. PMID 27907175.
Graham MK, Brown TR, Miller PS (April 2015). "Targeting the human androgen receptor gene with platinated triplex-forming oligonucleotides". Biochemistry. 54 (13): 2270–82. doi:10.1021/bi501565n. PMID 25768916.
Carbone GM, Napoli S, Valentini A, Cavalli F, Watson DK, Catapano CV (2004-08-03). "Triplex DNA-mediated downregulation of Ets2 expression results in growth inhibition and apoptosis in human prostate cancer cells". Nucleic Acids Research. 32 (14): 4358–67. doi:10.1093/nar/gkh744. PMC 514370. PMID 15314206.
Shen C, Rattat D, Buck A, Mehrke G, Polat B, Ribbert H, et al. (February 2003). "Targeting bcl-2 by triplex-forming oligonucleotide--a promising carrier for gene-radiotherapy". Cancer Biotherapy & Radiopharmaceuticals. 18 (1): 17–26. doi:10.1089/108497803321269296. PMID 12667305.
Sakamoto N, Chastain PD, Parniewski P, Ohshima K, Pandolfo M, Griffith JD, Wells RD (April 1999). "Sticky DNA: self-association properties of long GAA.TTC repeats in R.R.Y triplex structures from Friedreich's ataxia". Molecular Cell. 3 (4): 465–75. doi:10.1016/s1097-2765(00)80474-8. PMID 10230399.
Bacolla A, Wells RD (April 2009). "Non-B DNA conformations as determinants of mutagenesis and human disease". Molecular Carcinogenesis. 48 (4): 273–85. doi:10.1002/mc.20507. PMID 19306308. S2CID 5493647.
Kaushik Tiwari M, Adaku N, Peart N, Rogers FA (September 2016). "Triplex structures induce DNA double strand breaks via replication fork collapse in NER deficient cells". Nucleic Acids Research. 44 (16): 7742–54. doi:10.1093/nar/gkw515. PMC 5027492. PMID 27298253.
Jain A, Wang G, Vasquez KM (August 2008). "DNA triple helices: biological consequences and therapeutic potential". Biochimie. 90 (8): 1117–30. doi:10.1016/j.biochi.2008.02.011. PMC 2586808. PMID 18331847.
Hansen ME, Bentin T, Nielsen PE (July 2009). "High-affinity triplex targeting of double stranded DNA using chemically modified peptide nucleic acid oligomers". Nucleic Acids Research. 37 (13): 4498–507. doi:10.1093/nar/gkp437. PMC 2715256. PMID 19474349.
Ricciardi AS, McNeer NA, Anandalingam KK, Saltzman WM, Glazer PM (2014). "Targeted genome modification via triple helix formation". In Wajapeyee N (ed.). Cancer Genomics and Proteomics. Methods in Molecular Biology. Vol. 1176. New York, NY: Springer New York. pp. 89–106. doi:10.1007/978-1-4939-0992-6_8. ISBN 978-1-4939-0991-9. PMC 5111905. PMID 25030921.
Rogers FA, Vasquez KM, Egholm M, Glazer PM (December 2002). "Site-directed recombination via bifunctional PNA-DNA conjugates". Proceedings of the National Academy of Sciences of the United States of America. 99 (26): 16695–700. Bibcode:2002PNAS...9916695R. doi:10.1073/pnas.262556899. PMC 139206. PMID 12461167.
Montazersaheb S, Hejazi MS, Nozad Charoudeh H (November 2018). "Potential of Peptide Nucleic Acids in Future Therapeutic Applications". Advanced Pharmaceutical Bulletin. 8 (4): 551–563. doi:10.15171/apb.2018.064. PMC 6311635. PMID 30607328.
Firulli AB, Maibenco DC, Kinniburgh AJ (April 1994). "Triplex forming ability of a c-myc promoter element predicts promoter strength". Archives of Biochemistry and Biophysics. 310 (1): 236–42. doi:10.1006/abbi.1994.1162. PMID 8161210.
Zain R, Sun JS (May 2003). "Do natural DNA triple-helical structures occur and function in vivo?". Cellular and Molecular Life Sciences. 60 (5): 862–70. doi:10.1007/s00018-003-3046-3. PMC 11138710. PMID 12827276. S2CID 6227195.
Kato M, Shimizu N (October 1992). "Effect of the potential triplex DNA region on the in vitro expression of bacterial beta-lactamase gene in superhelical recombinant plasmids". Journal of Biochemistry. 112 (4): 492–4. doi:10.1093/oxfordjournals.jbchem.a123927. PMID 1491004.
Potaman VN, Ussery DW, Sinden RR (June 1996). "Formation of a combined H-DNA/open TATA box structure in the promoter sequence of the human Na,K-ATPase alpha2 gene". The Journal of Biological Chemistry. 271 (23): 13441–7. doi:10.1074/jbc.271.23.13441. PMID 8662935. S2CID 46550975.
Seidman MM, Glazer PM (August 2003). "The potential for gene repair via triple helix formation". The Journal of Clinical Investigation. 112 (4): 487–94. doi:10.1172/JCI19552. PMC 171401. PMID 12925687.
Rapozzi V, Cogoi S, Spessotto P, Risso A, Bonora GM, Quadrifoglio F, Xodo LE (January 2002). "Antigene effect in K562 cells of a PEG-conjugated triplex-forming oligonucleotide targeted to the bcr/abl oncogene". Biochemistry. 41 (2): 502–10. doi:10.1021/bi011314h. PMID 11781088.
Bertucat G, Lavery R, Prévost C (December 1998). "A model for parallel triple helix formation by RecA: single-single association with a homologous duplex via the minor groove". Journal of Biomolecular Structure & Dynamics. 16 (3): 535–46. doi:10.1080/07391102.1998.10508268. PMID 10052612.
Chen J, Tang Q, Guo S, Lu C, Le S, Yan J (September 2017). "Parallel triplex structure formed between stretched single-stranded DNA and homologous duplex DNA". Nucleic Acids Research. 45 (17): 10032–10041. doi:10.1093/nar/gkx628. PMC 5622322. PMID 28973442.
Camerini-Otero RD, Hsieh P (April 1993). "Parallel DNA triplexes, homologous recombination, and other homology-dependent DNA interactions". Cell. 73 (2): 217–23. doi:10.1016/0092-8674(93)90224-e. PMID 8477443. S2CID 34585948.
Bertucat G, Lavery R, Prévost C (September 1999). "A molecular model for RecA-promoted strand exchange via parallel triple-stranded helices". Biophysical Journal. 77 (3): 1562–76. Bibcode:1999BpJ....77.1562B. doi:10.1016/S0006-3495(99)77004-9. PMC 1300444. PMID 10465767.
Yang H, Zhou C, Dhar A, Pavletich NP (October 2020). "Mechanism of strand exchange from RecA-DNA synaptic and D-loop structures". Nature. 586 (7831): 801–806. Bibcode:2020Natur.586..801Y. doi:10.1038/s41586-020-2820-9. PMC 8366275. PMID 33057191. S2CID 222349650.
McKinney JA, Wang G, Mukherjee A, Christensen L, Subramanian SH, Zhao J, Vasquez KM (January 2020). "Distinct DNA repair pathways cause genomic instability at alternative DNA structures". Nature Communications. 11 (1): 236. Bibcode:2020NatCo..11..236M. doi:10.1038/s41467-019-13878-9. PMC 6957503. PMID 31932649.
Wang G, Vasquez KM (July 2014). "Impact of alternative DNA structures on DNA damage, DNA repair, and genetic instability". DNA Repair. 19: 143–51. doi:10.1016/j.dnarep.2014.03.017. PMC 4216180. PMID 24767258.
Raghavan SC, Chastain P, Lee JS, Hegde BG, Houston S, Langen R, et al. (June 2005). "Evidence for a triplex DNA conformation at the bcl-2 major breakpoint region of the t(14;18) translocation". The Journal of Biological Chemistry. 280 (24): 22749–60. doi:10.1074/jbc.M502952200. PMID 15840562.
Wang G, Vasquez KM (September 2004). "Naturally occurring H-DNA-forming sequences are mutagenic in mammalian cells". Proceedings of the National Academy of Sciences of the United States of America. 101 (37): 13448–53. Bibcode:2004PNAS..10113448W. doi:10.1073/pnas.0405116101. PMC 518777. PMID 15342911.
Vetcher AA, Napierala M, Iyer RR, Chastain PD, Griffith JD, Wells RD (October 2002). "Sticky DNA, a long GAA.GAA.TTC triplex that is formed intramolecularly, in the sequence of intron 1 of the frataxin gene". The Journal of Biological Chemistry. 277 (42): 39217–27. doi:10.1074/jbc.M205209200. PMID 12161437.
Fowler, R. F.; Skinner, D. M. (1986-07-05). "Eukaryotic DNA diverges at a long and complex pyrimidine:purine tract that can adopt altered conformations". The Journal of Biological Chemistry. 38 (1–3): 145–152. PMID 3013872.
Wang G, Vasquez KM (January 2017). "Effects of Replication and Transcription on DNA Structure-Related Genetic Instability". Genes. 8 (1): 17. doi:10.3390/genes8010017. PMC 5295012. PMID 28067787.
Zhao J, Wang G, Del Mundo IM, McKinney JA, Lu X, Bacolla A, et al. (January 2018). "Distinct Mechanisms of Nuclease-Directed DNA-Structure-Induced Genetic Instability in Cancer Genomes". Cell Reports. 22 (5): 1200–1210. doi:10.1016/j.celrep.2018.01.014. PMC 6011834. PMID 29386108.
Belotserkovskii BP, De Silva E, Tornaletti S, Wang G, Vasquez KM, Hanawalt PC (November 2007). "A triplex-forming sequence from the human c-MYC promoter interferes with DNA transcription". The Journal of Biological Chemistry. 282 (44): 32433–41. doi:10.1074/jbc.M704618200. PMID 17785457. S2CID 24211097.
Pandey S, Ogloblina AM, Belotserkovskii BP, Dolinnaya NG, Yakubovskaya MG, Mirkin SM, Hanawalt PC (August 2015). "Transcription blockage by stable H-DNA analogs in vitro". Nucleic Acids Research. 43 (14): 6994–7004. doi:10.1093/nar/gkv622. PMC 4538819. PMID 26101261.
Del Mundo IM, Zewail-Foote M, Kerwin SM, Vasquez KM (May 2017). "Alternative DNA structure formation in the mutagenic human c-MYC promoter". Nucleic Acids Research. 45 (8): 4929–4943. doi:10.1093/nar/gkx100. PMC 5416782. PMID 28334873.
McNeer NA, Schleifman EB, Cuthbert A, Brehm M, Jackson A, Cheng C, et al. (June 2013). "Systemic delivery of triplex-forming PNA and donor DNA by nanoparticles mediates site-specific genome editing of human hematopoietic cells in vivo". Gene Therapy. 20 (6): 658–69. doi:10.1038/gt.2012.82. PMC 3713483. PMID 23076379.
Hnedzko D, Cheruiyot SK, Rozners E (September 2014). "Using triple-helix-forming Peptide nucleic acids for sequence-selective recognition of double-stranded RNA". Current Protocols in Nucleic Acid Chemistry. 58: 4.60.1–23. doi:10.1002/0471142700.nc0460s58. ISSN 1934-9270. PMC 4174339. PMID 25199637.
Schleifman EB, Bindra R, Leif J, del Campo J, Rogers FA, Uchil P, et al. (September 2011). "Targeted disruption of the CCR5 gene in human hematopoietic stem cells stimulated by peptide nucleic acids". Chemistry & Biology. 18 (9): 1189–98. doi:10.1016/j.chembiol.2011.07.010. PMC 3183429. PMID 21944757.
McNeer NA, Anandalingam K, Fields RJ, Caputo C, Kopic S, Gupta A, et al. (April 2015). "Nanoparticles that deliver triplex-forming peptide nucleic acid molecules correct F508del CFTR in airway epithelium". Nature Communications. 6 (1): 6952. Bibcode:2015NatCo...6.6952M. doi:10.1038/ncomms7952. PMC 4480796. PMID 25914116.
Lukacs GL, Verkman AS (February 2012). "CFTR: folding, misfolding and correcting the ΔF508 conformational defect". Trends in Molecular Medicine. 18 (2): 81–91. doi:10.1016/j.molmed.2011.10.003. PMC 3643519. PMID 22138491.
Pauling L, Corey RB (February 1953). "A Proposed Structure For The Nucleic Acids". Proceedings of the National Academy of Sciences of the United States of America. 39 (2): 84–97. Bibcode:1953PNAS...39...84P. doi:10.1073/pnas.39.2.84. PMC 1063734. PMID 16578429.
Pauling L, Corey RB (February 1953). "Structure of the nucleic acids". Nature. 171 (4347): 346. Bibcode:1953Natur.171..346P. doi:10.1038/171346a0. PMID 13036888. S2CID 4151877.
Fraser RD (March 2004). "The structure of deoxyribose nucleic acid". Journal of Structural Biology. 145 (3): 184–5. doi:10.1016/j.jsb.2004.01.001. PMID 14997898.
Hanvey JC, Shimizu M, Wells RD (September 1988). "Intramolecular DNA triplexes in supercoiled plasmids". Proceedings of the National Academy of Sciences of the United States of America. 85 (17): 6292–6. Bibcode:1988PNAS...85.6292H. doi:10.1073/pnas.85.17.6292. PMC 281955. PMID 3413097.
Mirkin SM, Lyamichev VI, Drushlyak KN, Dobrynin VN, Filippov SA, Frank-Kamenetskii MD (December 1987). "DNA H form requires a homopurine-homopyrimidine mirror repeat". Nature. 330 (6147): 495–7. Bibcode:1987Natur.330..495M. doi:10.1038/330495a0. PMID 2825028. S2CID 4360764.

ncbi.nlm.nih.gov

Dayn A, Samadashwily GM, Mirkin SM (December 1992). "Intramolecular DNA triplexes: unusual sequence requirements and influence on DNA polymerization". Proceedings of the National Academy of Sciences of the United States of America. 89 (23): 11406–10. Bibcode:1992PNAS...8911406D. doi:10.1073/pnas.89.23.11406. PMC 50559. PMID 1454828.
Brázdová M, Tichý V, Helma R, Bažantová P, Polášková A, Krejčí A, et al. (2016). "p53 Specifically Binds Triplex DNA In Vitro and in Cells". PLOS ONE. 11 (12): e0167439. Bibcode:2016PLoSO..1167439B. doi:10.1371/journal.pone.0167439. PMC 5131957. PMID 27907175.
Carbone GM, Napoli S, Valentini A, Cavalli F, Watson DK, Catapano CV (2004-08-03). "Triplex DNA-mediated downregulation of Ets2 expression results in growth inhibition and apoptosis in human prostate cancer cells". Nucleic Acids Research. 32 (14): 4358–67. doi:10.1093/nar/gkh744. PMC 514370. PMID 15314206.
Kaushik Tiwari M, Adaku N, Peart N, Rogers FA (September 2016). "Triplex structures induce DNA double strand breaks via replication fork collapse in NER deficient cells". Nucleic Acids Research. 44 (16): 7742–54. doi:10.1093/nar/gkw515. PMC 5027492. PMID 27298253.
Jain A, Wang G, Vasquez KM (August 2008). "DNA triple helices: biological consequences and therapeutic potential". Biochimie. 90 (8): 1117–30. doi:10.1016/j.biochi.2008.02.011. PMC 2586808. PMID 18331847.
Hansen ME, Bentin T, Nielsen PE (July 2009). "High-affinity triplex targeting of double stranded DNA using chemically modified peptide nucleic acid oligomers". Nucleic Acids Research. 37 (13): 4498–507. doi:10.1093/nar/gkp437. PMC 2715256. PMID 19474349.
Ricciardi AS, McNeer NA, Anandalingam KK, Saltzman WM, Glazer PM (2014). "Targeted genome modification via triple helix formation". In Wajapeyee N (ed.). Cancer Genomics and Proteomics. Methods in Molecular Biology. Vol. 1176. New York, NY: Springer New York. pp. 89–106. doi:10.1007/978-1-4939-0992-6_8. ISBN 978-1-4939-0991-9. PMC 5111905. PMID 25030921.
Rogers FA, Vasquez KM, Egholm M, Glazer PM (December 2002). "Site-directed recombination via bifunctional PNA-DNA conjugates". Proceedings of the National Academy of Sciences of the United States of America. 99 (26): 16695–700. Bibcode:2002PNAS...9916695R. doi:10.1073/pnas.262556899. PMC 139206. PMID 12461167.
Montazersaheb S, Hejazi MS, Nozad Charoudeh H (November 2018). "Potential of Peptide Nucleic Acids in Future Therapeutic Applications". Advanced Pharmaceutical Bulletin. 8 (4): 551–563. doi:10.15171/apb.2018.064. PMC 6311635. PMID 30607328.
Zain R, Sun JS (May 2003). "Do natural DNA triple-helical structures occur and function in vivo?". Cellular and Molecular Life Sciences. 60 (5): 862–70. doi:10.1007/s00018-003-3046-3. PMC 11138710. PMID 12827276. S2CID 6227195.
Seidman MM, Glazer PM (August 2003). "The potential for gene repair via triple helix formation". The Journal of Clinical Investigation. 112 (4): 487–94. doi:10.1172/JCI19552. PMC 171401. PMID 12925687.
Chen J, Tang Q, Guo S, Lu C, Le S, Yan J (September 2017). "Parallel triplex structure formed between stretched single-stranded DNA and homologous duplex DNA". Nucleic Acids Research. 45 (17): 10032–10041. doi:10.1093/nar/gkx628. PMC 5622322. PMID 28973442.
Bertucat G, Lavery R, Prévost C (September 1999). "A molecular model for RecA-promoted strand exchange via parallel triple-stranded helices". Biophysical Journal. 77 (3): 1562–76. Bibcode:1999BpJ....77.1562B. doi:10.1016/S0006-3495(99)77004-9. PMC 1300444. PMID 10465767.
Yang H, Zhou C, Dhar A, Pavletich NP (October 2020). "Mechanism of strand exchange from RecA-DNA synaptic and D-loop structures". Nature. 586 (7831): 801–806. Bibcode:2020Natur.586..801Y. doi:10.1038/s41586-020-2820-9. PMC 8366275. PMID 33057191. S2CID 222349650.
McKinney JA, Wang G, Mukherjee A, Christensen L, Subramanian SH, Zhao J, Vasquez KM (January 2020). "Distinct DNA repair pathways cause genomic instability at alternative DNA structures". Nature Communications. 11 (1): 236. Bibcode:2020NatCo..11..236M. doi:10.1038/s41467-019-13878-9. PMC 6957503. PMID 31932649.
Wang G, Vasquez KM (July 2014). "Impact of alternative DNA structures on DNA damage, DNA repair, and genetic instability". DNA Repair. 19: 143–51. doi:10.1016/j.dnarep.2014.03.017. PMC 4216180. PMID 24767258.
Wang G, Vasquez KM (September 2004). "Naturally occurring H-DNA-forming sequences are mutagenic in mammalian cells". Proceedings of the National Academy of Sciences of the United States of America. 101 (37): 13448–53. Bibcode:2004PNAS..10113448W. doi:10.1073/pnas.0405116101. PMC 518777. PMID 15342911.
Wang G, Vasquez KM (January 2017). "Effects of Replication and Transcription on DNA Structure-Related Genetic Instability". Genes. 8 (1): 17. doi:10.3390/genes8010017. PMC 5295012. PMID 28067787.
Zhao J, Wang G, Del Mundo IM, McKinney JA, Lu X, Bacolla A, et al. (January 2018). "Distinct Mechanisms of Nuclease-Directed DNA-Structure-Induced Genetic Instability in Cancer Genomes". Cell Reports. 22 (5): 1200–1210. doi:10.1016/j.celrep.2018.01.014. PMC 6011834. PMID 29386108.
Pandey S, Ogloblina AM, Belotserkovskii BP, Dolinnaya NG, Yakubovskaya MG, Mirkin SM, Hanawalt PC (August 2015). "Transcription blockage by stable H-DNA analogs in vitro". Nucleic Acids Research. 43 (14): 6994–7004. doi:10.1093/nar/gkv622. PMC 4538819. PMID 26101261.
Del Mundo IM, Zewail-Foote M, Kerwin SM, Vasquez KM (May 2017). "Alternative DNA structure formation in the mutagenic human c-MYC promoter". Nucleic Acids Research. 45 (8): 4929–4943. doi:10.1093/nar/gkx100. PMC 5416782. PMID 28334873.
McNeer NA, Schleifman EB, Cuthbert A, Brehm M, Jackson A, Cheng C, et al. (June 2013). "Systemic delivery of triplex-forming PNA and donor DNA by nanoparticles mediates site-specific genome editing of human hematopoietic cells in vivo". Gene Therapy. 20 (6): 658–69. doi:10.1038/gt.2012.82. PMC 3713483. PMID 23076379.
Hnedzko D, Cheruiyot SK, Rozners E (September 2014). "Using triple-helix-forming Peptide nucleic acids for sequence-selective recognition of double-stranded RNA". Current Protocols in Nucleic Acid Chemistry. 58: 4.60.1–23. doi:10.1002/0471142700.nc0460s58. ISSN 1934-9270. PMC 4174339. PMID 25199637.
Schleifman EB, Bindra R, Leif J, del Campo J, Rogers FA, Uchil P, et al. (September 2011). "Targeted disruption of the CCR5 gene in human hematopoietic stem cells stimulated by peptide nucleic acids". Chemistry & Biology. 18 (9): 1189–98. doi:10.1016/j.chembiol.2011.07.010. PMC 3183429. PMID 21944757.
McNeer NA, Anandalingam K, Fields RJ, Caputo C, Kopic S, Gupta A, et al. (April 2015). "Nanoparticles that deliver triplex-forming peptide nucleic acid molecules correct F508del CFTR in airway epithelium". Nature Communications. 6 (1): 6952. Bibcode:2015NatCo...6.6952M. doi:10.1038/ncomms7952. PMC 4480796. PMID 25914116.
Lukacs GL, Verkman AS (February 2012). "CFTR: folding, misfolding and correcting the ΔF508 conformational defect". Trends in Molecular Medicine. 18 (2): 81–91. doi:10.1016/j.molmed.2011.10.003. PMC 3643519. PMID 22138491.
Pauling L, Corey RB (February 1953). "A Proposed Structure For The Nucleic Acids". Proceedings of the National Academy of Sciences of the United States of America. 39 (2): 84–97. Bibcode:1953PNAS...39...84P. doi:10.1073/pnas.39.2.84. PMC 1063734. PMID 16578429.
Hanvey JC, Shimizu M, Wells RD (September 1988). "Intramolecular DNA triplexes in supercoiled plasmids". Proceedings of the National Academy of Sciences of the United States of America. 85 (17): 6292–6. Bibcode:1988PNAS...85.6292H. doi:10.1073/pnas.85.17.6292. PMC 281955. PMID 3413097.

oregonstate.edu

scarc.library.oregonstate.edu

Fraser RD (March 2004). "The structure of deoxyribose nucleic acid". Journal of Structural Biology. 145 (3): 184–5. doi:10.1016/j.jsb.2004.01.001. PMID 14997898.

semanticscholar.org

api.semanticscholar.org

Frank-Kamenetskii MD, Mirkin SM (1995-01-01). "Triplex DNA structures". Annual Review of Biochemistry. 64: 65–95. doi:10.1146/annurev.bi.64.070195.000433. PMID 7574496. S2CID 21426188.
Bacolla A, Wells RD (April 2009). "Non-B DNA conformations as determinants of mutagenesis and human disease". Molecular Carcinogenesis. 48 (4): 273–85. doi:10.1002/mc.20507. PMID 19306308. S2CID 5493647.
Zain R, Sun JS (May 2003). "Do natural DNA triple-helical structures occur and function in vivo?". Cellular and Molecular Life Sciences. 60 (5): 862–70. doi:10.1007/s00018-003-3046-3. PMC 11138710. PMID 12827276. S2CID 6227195.
Potaman VN, Ussery DW, Sinden RR (June 1996). "Formation of a combined H-DNA/open TATA box structure in the promoter sequence of the human Na,K-ATPase alpha2 gene". The Journal of Biological Chemistry. 271 (23): 13441–7. doi:10.1074/jbc.271.23.13441. PMID 8662935. S2CID 46550975.
Camerini-Otero RD, Hsieh P (April 1993). "Parallel DNA triplexes, homologous recombination, and other homology-dependent DNA interactions". Cell. 73 (2): 217–23. doi:10.1016/0092-8674(93)90224-e. PMID 8477443. S2CID 34585948.
Yang H, Zhou C, Dhar A, Pavletich NP (October 2020). "Mechanism of strand exchange from RecA-DNA synaptic and D-loop structures". Nature. 586 (7831): 801–806. Bibcode:2020Natur.586..801Y. doi:10.1038/s41586-020-2820-9. PMC 8366275. PMID 33057191. S2CID 222349650.
Belotserkovskii BP, De Silva E, Tornaletti S, Wang G, Vasquez KM, Hanawalt PC (November 2007). "A triplex-forming sequence from the human c-MYC promoter interferes with DNA transcription". The Journal of Biological Chemistry. 282 (44): 32433–41. doi:10.1074/jbc.M704618200. PMID 17785457. S2CID 24211097.
Pauling L, Corey RB (February 1953). "Structure of the nucleic acids". Nature. 171 (4347): 346. Bibcode:1953Natur.171..346P. doi:10.1038/171346a0. PMID 13036888. S2CID 4151877.
Mirkin SM, Lyamichev VI, Drushlyak KN, Dobrynin VN, Filippov SA, Frank-Kamenetskii MD (December 1987). "DNA H form requires a homopurine-homopyrimidine mirror repeat". Nature. 330 (6147): 495–7. Bibcode:1987Natur.330..495M. doi:10.1038/330495a0. PMID 2825028. S2CID 4360764.

worldcat.org

search.worldcat.org

Hnedzko D, Cheruiyot SK, Rozners E (September 2014). "Using triple-helix-forming Peptide nucleic acids for sequence-selective recognition of double-stranded RNA". Current Protocols in Nucleic Acid Chemistry. 58: 4.60.1–23. doi:10.1002/0471142700.nc0460s58. ISSN 1934-9270. PMC 4174339. PMID 25199637.