Visual Molecular Dynamics (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Visual Molecular Dynamics" in English language version.

refsWebsite

Global rank English rank

10uiuc.edu

3,087^th place

2,519^th place

7nih.gov

4^th place

6doi.org

2^nd place

4worldcat.org

5^th place

4semanticscholar.org

11^th place

8^th place

1mit.edu

415^th place

327^th place

1ccl.net

low place

1inria.fr

4,903^rd place

3,679^th place

1acs.org

1,248^th place

1,104^th place

acs.org

pubs.acs.org

Fernandes, Henrique S.; Sousa, Sérgio F.; Cerqueira, Nuno M. F. S. A. (2019-11-25). "VMD Store–A VMD Plugin to Browse, Discover, and Install VMD Extensions". Journal of Chemical Information and Modeling. 59 (11): 4519–4523. doi:10.1021/acs.jcim.9b00739. ISSN 1549-9596. PMID 31682440. S2CID 207893960.

ccl.net

Bishop, Tom Connor (July 4, 1995). "Announcing the Program VMD, Version 1.0". Computation Chemistry List. CCL.Net.

doi.org

Humphrey, William; Dalke, Andrew; Schulten, Klaus (February 1996). "VMD: Visual molecular dynamics". Journal of Molecular Graphics. 14 (1): 33–38. doi:10.1016/0263-7855(96)00018-5. PMID 8744570.
Li, Lin; Jia, Zhe; Peng, Yunhui; Chakravorty, Arghya; Sun, Lexuan; Alexov, Emil (2017-11-15). "DelPhiForce web server: electrostatic forces and energy calculations and visualization". Bioinformatics. 33 (22): 3661–3663. doi:10.1093/bioinformatics/btx495. ISSN 1367-4803. PMC 5870670. PMID 29036596.
Ribeiro, João V.; Tamames, Juan A. C.; Cerqueira, Nuno M. F. S. A.; Fernandes, Pedro A.; Ramos, Maria J. (2013-12-01). "Volarea – A Bioinformatics Tool to Calculate the Surface Area and the Volume of Molecular Systems". Chemical Biology & Drug Design. 82 (6): 743–755. doi:10.1111/cbdd.12197. ISSN 1747-0285. PMID 24164915. S2CID 45385688.
Knapp, Bernhard; Lederer, Nadja; Omasits, Ulrich; Schreiner, Wolfgang (2010-12-01). "vmdICE: A plug-in for rapid evaluation of molecular dynamics simulations using VMD". Journal of Computational Chemistry. 31 (16): 2868–2873. doi:10.1002/jcc.21581. ISSN 1096-987X. PMID 20928849. S2CID 674918.
Fernandes, Henrique; Ramos, Maria João; Cerqueira, Nuno M. F. S. A. (2018). "molUP: A VMD plugin to handle QM and ONIOM calculations using the gaussian software". Journal of Computational Chemistry. 39 (19): 1344–1353. doi:10.1002/jcc.25189. PMID 29464735. S2CID 3413848.
Fernandes, Henrique S.; Sousa, Sérgio F.; Cerqueira, Nuno M. F. S. A. (2019-11-25). "VMD Store–A VMD Plugin to Browse, Discover, and Install VMD Extensions". Journal of Chemical Information and Modeling. 59 (11): 4519–4523. doi:10.1021/acs.jcim.9b00739. ISSN 1549-9596. PMID 31682440. S2CID 207893960.

inria.fr

hal.inria.fr

Dreher, Matthieu; Piuzzi, Marc; Ahmed, Turki; Matthieuten, Chavent; et al. (2013). "Interactive Molecular Dynamics: Scaling up to Large Systems" (PDF). International Conference on Computational Science, ICCS 2013, Jun 2013, Barcelone, Spain. New York, NY, USA: Elsevier.

mit.edu

web.mit.edu

"VMD User's Guide Version 1.9.1" (PDF). Massachusetts Institute of Technology. NIH Resource for Macromolecular Modeling and Bioinformatics. Retrieved January 29, 2012.

nih.gov

pubmed.ncbi.nlm.nih.gov

Humphrey, William; Dalke, Andrew; Schulten, Klaus (February 1996). "VMD: Visual molecular dynamics". Journal of Molecular Graphics. 14 (1): 33–38. doi:10.1016/0263-7855(96)00018-5. PMID 8744570.
Li, Lin; Jia, Zhe; Peng, Yunhui; Chakravorty, Arghya; Sun, Lexuan; Alexov, Emil (2017-11-15). "DelPhiForce web server: electrostatic forces and energy calculations and visualization". Bioinformatics. 33 (22): 3661–3663. doi:10.1093/bioinformatics/btx495. ISSN 1367-4803. PMC 5870670. PMID 29036596.
Ribeiro, João V.; Tamames, Juan A. C.; Cerqueira, Nuno M. F. S. A.; Fernandes, Pedro A.; Ramos, Maria J. (2013-12-01). "Volarea – A Bioinformatics Tool to Calculate the Surface Area and the Volume of Molecular Systems". Chemical Biology & Drug Design. 82 (6): 743–755. doi:10.1111/cbdd.12197. ISSN 1747-0285. PMID 24164915. S2CID 45385688.
Knapp, Bernhard; Lederer, Nadja; Omasits, Ulrich; Schreiner, Wolfgang (2010-12-01). "vmdICE: A plug-in for rapid evaluation of molecular dynamics simulations using VMD". Journal of Computational Chemistry. 31 (16): 2868–2873. doi:10.1002/jcc.21581. ISSN 1096-987X. PMID 20928849. S2CID 674918.
Fernandes, Henrique; Ramos, Maria João; Cerqueira, Nuno M. F. S. A. (2018). "molUP: A VMD plugin to handle QM and ONIOM calculations using the gaussian software". Journal of Computational Chemistry. 39 (19): 1344–1353. doi:10.1002/jcc.25189. PMID 29464735. S2CID 3413848.
Fernandes, Henrique S.; Sousa, Sérgio F.; Cerqueira, Nuno M. F. S. A. (2019-11-25). "VMD Store–A VMD Plugin to Browse, Discover, and Install VMD Extensions". Journal of Chemical Information and Modeling. 59 (11): 4519–4523. doi:10.1021/acs.jcim.9b00739. ISSN 1549-9596. PMID 31682440. S2CID 207893960.

ncbi.nlm.nih.gov

Li, Lin; Jia, Zhe; Peng, Yunhui; Chakravorty, Arghya; Sun, Lexuan; Alexov, Emil (2017-11-15). "DelPhiForce web server: electrostatic forces and energy calculations and visualization". Bioinformatics. 33 (22): 3661–3663. doi:10.1093/bioinformatics/btx495. ISSN 1367-4803. PMC 5870670. PMID 29036596.

semanticscholar.org

api.semanticscholar.org

Ribeiro, João V.; Tamames, Juan A. C.; Cerqueira, Nuno M. F. S. A.; Fernandes, Pedro A.; Ramos, Maria J. (2013-12-01). "Volarea – A Bioinformatics Tool to Calculate the Surface Area and the Volume of Molecular Systems". Chemical Biology & Drug Design. 82 (6): 743–755. doi:10.1111/cbdd.12197. ISSN 1747-0285. PMID 24164915. S2CID 45385688.
Knapp, Bernhard; Lederer, Nadja; Omasits, Ulrich; Schreiner, Wolfgang (2010-12-01). "vmdICE: A plug-in for rapid evaluation of molecular dynamics simulations using VMD". Journal of Computational Chemistry. 31 (16): 2868–2873. doi:10.1002/jcc.21581. ISSN 1096-987X. PMID 20928849. S2CID 674918.
Fernandes, Henrique; Ramos, Maria João; Cerqueira, Nuno M. F. S. A. (2018). "molUP: A VMD plugin to handle QM and ONIOM calculations using the gaussian software". Journal of Computational Chemistry. 39 (19): 1344–1353. doi:10.1002/jcc.25189. PMID 29464735. S2CID 3413848.
Fernandes, Henrique S.; Sousa, Sérgio F.; Cerqueira, Nuno M. F. S. A. (2019-11-25). "VMD Store–A VMD Plugin to Browse, Discover, and Install VMD Extensions". Journal of Chemical Information and Modeling. 59 (11): 4519–4523. doi:10.1021/acs.jcim.9b00739. ISSN 1549-9596. PMID 31682440. S2CID 207893960.

uiuc.edu

ks.uiuc.edu

VMD license
"VMD License". Theoretical and Computational Biophysics Group. NIH Center for Macromolecular Modeling & Bioinformatics, University of Illinois at Urbana–Champaign. Retrieved 4 January 2016.
Schulten, Klaus. "Department of Health and Human Services Public Health Service National Institutes of Health NIH Resource Biomedical Research Technology Program Annual Progress Report, Grant Number P41 RR05969" (PDF). University of Illinois at Urbana–Champaign. Retrieved 5 January 2016.
Schulten, Klaus J. "Department of Health and Human Services Public Health Service National Institutes of Health National Center for Research Resources Biomedical Technology Area Annual Progress Report (8/1/10 – 7/31/11), Grant Number P41RR005969" (PDF). University of Illinois at Urbana–Champaign. Retrieved 5 January 2016.
"VMD Release History". Theoretical and Computational Biophysics Group. NIH Center for Macromolecular Modeling & Bioinformatics, University of Illinois at Urbana–Champaign. Retrieved 4 January 2016.
"VMD 1.3". Theoretical and Computational Biophysics Group. NIH Center for Macromolecular Modeling & Bioinformatics, University of Illinois at Urbana–Champaign. Retrieved 4 January 2016.
"VMD 1.4". Theoretical and Computational Biophysics Group. NIH Center for Macromolecular Modeling & Bioinformatics, University of Illinois at Urbana–Champaign. Retrieved 4 January 2016.
Stone, John E.; Gullingsrud, Justin; Grayson, Paul; Schulten, Klaus (2001). "A system for interactive molecular dynamics simulation". 2001 ACM Symposium on Interactive 3D Graphics. New York, NY, USA: ACM. pp. 191–194.
"VMD 1.8". Theoretical and Computational Biophysics Group. NIH Center for Macromolecular Modeling & Bioinformatics, University of Illinois at Urbana–Champaign. Retrieved 4 January 2016.
"VMD 1.8.7". Theoretical and Computational Biophysics Group. NIH Center for Macromolecular Modeling & Bioinformatics, University of Illinois at Urbana–Champaign. Retrieved 4 January 2016.

worldcat.org

search.worldcat.org

Li, Lin; Jia, Zhe; Peng, Yunhui; Chakravorty, Arghya; Sun, Lexuan; Alexov, Emil (2017-11-15). "DelPhiForce web server: electrostatic forces and energy calculations and visualization". Bioinformatics. 33 (22): 3661–3663. doi:10.1093/bioinformatics/btx495. ISSN 1367-4803. PMC 5870670. PMID 29036596.
Ribeiro, João V.; Tamames, Juan A. C.; Cerqueira, Nuno M. F. S. A.; Fernandes, Pedro A.; Ramos, Maria J. (2013-12-01). "Volarea – A Bioinformatics Tool to Calculate the Surface Area and the Volume of Molecular Systems". Chemical Biology & Drug Design. 82 (6): 743–755. doi:10.1111/cbdd.12197. ISSN 1747-0285. PMID 24164915. S2CID 45385688.
Knapp, Bernhard; Lederer, Nadja; Omasits, Ulrich; Schreiner, Wolfgang (2010-12-01). "vmdICE: A plug-in for rapid evaluation of molecular dynamics simulations using VMD". Journal of Computational Chemistry. 31 (16): 2868–2873. doi:10.1002/jcc.21581. ISSN 1096-987X. PMID 20928849. S2CID 674918.
Fernandes, Henrique S.; Sousa, Sérgio F.; Cerqueira, Nuno M. F. S. A. (2019-11-25). "VMD Store–A VMD Plugin to Browse, Discover, and Install VMD Extensions". Journal of Chemical Information and Modeling. 59 (11): 4519–4523. doi:10.1021/acs.jcim.9b00739. ISSN 1549-9596. PMID 31682440. S2CID 207893960.