Weighted correlation network analysis (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Weighted correlation network analysis" in English language version.

refsWebsite

Global rank English rank

50nih.gov

4^th place

27doi.org

2^nd place

9harvard.edu

18^th place

17^th place

3semanticscholar.org

11^th place

8^th place

2worldcat.org

5^th place

1web.archive.org

1^st place

1psu.edu

207^th place

136^th place

1tigem.it

low place

1arxiv.org

69^th place

59^th place

arxiv.org

Ravasz E, Somera AL, Mongru DA, Oltvai ZN, Barabasi AL (2002). "Hierarchical organization of modularity in metabolic networks". Science. 297 (5586): 1551–1555. arXiv:cond-mat/0209244. Bibcode:2002Sci...297.1551R. doi:10.1126/science.1073374. PMID 12202830. S2CID 14452443.

doi.org

Langfelder P, Mischel PS, Horvath S, Ravasi T (17 April 2013). "When Is Hub Gene Selection Better than Standard Meta-Analysis?". PLOS ONE. 8 (4): e61505. Bibcode:2013PLoSO...861505L. doi:10.1371/journal.pone.0061505. PMC 3629234. PMID 23613865.
Zhang B, Horvath S (2005). "A general framework for weighted gene co-expression network analysis" (PDF). Statistical Applications in Genetics and Molecular Biology. 4: 17. CiteSeerX 10.1.1.471.9599. doi:10.2202/1544-6115.1128. PMID 16646834. S2CID 7756201. Archived from the original (PDF) on 2020-09-28. Retrieved 2013-11-29.
Horvath S, Dong J (2008). "Geometric Interpretation of Gene Coexpression Network Analysis". PLOS Computational Biology. 4 (8): e1000117. Bibcode:2008PLSCB...4E0117H. doi:10.1371/journal.pcbi.1000117. PMC 2446438. PMID 18704157.
Oldham MC, Langfelder P, Horvath S (12 June 2012). "Network methods for describing sample relationships in genomic datasets: application to Huntington's disease". BMC Systems Biology. 6: 63. doi:10.1186/1752-0509-6-63. PMC 3441531. PMID 22691535.
Langfelder P, Luo R, Oldham MC, Horvath S (20 January 2011). "Is my network module preserved and reproducible?". PLOS Computational Biology. 7 (1): e1001057. Bibcode:2011PLSCB...7E1057L. doi:10.1371/journal.pcbi.1001057. PMC 3024255. PMID 21283776.
Dong J, Horvath S (4 June 2007). "Understanding network concepts in modules". BMC Systems Biology. 1: 24. doi:10.1186/1752-0509-1-24. PMC 3238286. PMID 17547772.
Ranola JM, Langfelder P, Lange K, Horvath S (14 March 2013). "Cluster and propensity based approximation of a network". BMC Systems Biology. 7: 21. doi:10.1186/1752-0509-7-21. PMC 3663730. PMID 23497424.
Ravasz E, Somera AL, Mongru DA, Oltvai ZN, Barabasi AL (2002). "Hierarchical organization of modularity in metabolic networks". Science. 297 (5586): 1551–1555. arXiv:cond-mat/0209244. Bibcode:2002Sci...297.1551R. doi:10.1126/science.1073374. PMID 12202830. S2CID 14452443.
Yip AM, Horvath S (24 January 2007). "Gene network interconnectedness and the generalized topological overlap measure". BMC Bioinformatics. 8: 22. doi:10.1186/1471-2105-8-22. PMC 1797055. PMID 17250769.
Langfelder P, Zhang B, Horvath S (2007). "Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut library for R". Bioinformatics. 24 (5): 719–20. doi:10.1093/bioinformatics/btm563. PMID 18024473. S2CID 1095190.
Foroushani A, Agrahari R, Docking R, Chang L, Duns G, Hudoba M, Karsan A, Zare H (16 March 2017). "Large-scale gene network analysis reveals the significance of extracellular matrix pathway and homeobox genes in acute myeloid leukemia: an introduction to the Pigengene package and its applications". BMC Medical Genomics. 10 (1): 16. doi:10.1186/s12920-017-0253-6. PMC 5353782. PMID 28298217.
Agrahari, Rupesh; Foroushani, Amir; Docking, T. Roderick; Chang, Linda; Duns, Gerben; Hudoba, Monika; Karsan, Aly; Zare, Habil (3 May 2018). "Applications of Bayesian network models in predicting types of hematological malignancies". Scientific Reports. 8 (1): 6951. Bibcode:2018NatSR...8.6951A. doi:10.1038/s41598-018-24758-5. ISSN 2045-2322. PMC 5934387. PMID 29725024.
Langfelder P, Horvath S (2007). "Eigengene networks for studying the relationships between co-expression modules". BMC Systems Biology. 2007 (1): 54. doi:10.1186/1752-0509-1-54. PMC 2267703. PMID 18031580.
Horvath S, Zhang B, Carlson M, Lu KV, Zhu S, Felciano RM, Laurance MF, Zhao W, Shu Q, Lee Y, Scheck AC, Liau LM, Wu H, Geschwind DH, Febbo PG, Kornblum HI, Cloughesy TF, Nelson SF, Mischel PS (2006). "Analysis of Oncogenic Signaling Networks in Glioblastoma Identifies ASPM as a Novel Molecular Target". PNAS. 103 (46): 17402–17407. Bibcode:2006PNAS..10317402H. doi:10.1073/pnas.0608396103. PMC 1635024. PMID 17090670.
Hartung, Thomas; Kleensang, Andre; Tran, Vy; Maertens, Alexandra (2018). "Weighted Gene Correlation Network Analysis (WGCNA) Reveals Novel Transcription Factors Associated With Bisphenol A Dose-Response". Frontiers in Genetics. 9: 508. doi:10.3389/fgene.2018.00508. ISSN 1664-8021. PMC 6240694. PMID 30483308.
Chen Y, Zhu J, Lum PY, Yang X, Pinto S, MacNeil DJ, Zhang C, Lamb J, Edwards S, Sieberts SK, Leonardson A, Castellini LW, Wang S, Champy MF, Zhang B, Emilsson V, Doss S, Ghazalpour A, Horvath S, Drake TA, Lusis AJ, Schadt EE (27 March 2008). "Variations in DNA elucidate molecular networks that cause disease". Nature. 452 (7186): 429–35. Bibcode:2008Natur.452..429C. doi:10.1038/nature06757. PMC 2841398. PMID 18344982.
Plaisier CL, Horvath S, Huertas-Vazquez A, Cruz-Bautista I, Herrera MF, Tusie-Luna T, Aguilar-Salinas C, Pajukanta P, Storey JD (11 September 2009). "A Systems Genetics Approach Implicates USF1, FADS3, and Other Causal Candidate Genes for Familial Combined Hyperlipidemia". PLOS Genetics. 5 (9): e1000642. doi:10.1371/journal.pgen.1000642. PMC 2730565. PMID 19750004.
Voineagu I, Wang X, Johnston P, Lowe JK, Tian Y, Horvath S, Mill J, Cantor RM, Blencowe BJ, Geschwind DH (25 May 2011). "Transcriptomic analysis of autistic brain reveals convergent molecular pathology". Nature. 474 (7351): 380–4. doi:10.1038/nature10110. PMC 3607626. PMID 21614001.
Hawrylycz MJ, Lein ES, Guillozet-Bongaarts AL, Shen EH, Ng L, Miller JA, van de Lagemaat LN, Smith KA, Ebbert A, Riley ZL, Abajian C, Beckmann CF, Bernard A, Bertagnolli D, Boe AF, Cartagena PM, Chakravarty MM, Chapin M, Chong J, Dalley RA, David Daly B, Dang C, Datta S, Dee N, Dolbeare TA, Faber V, Feng D, Fowler DR, Goldy J, Gregor BW, Haradon Z, Haynor DR, Hohmann JG, Horvath S, Howard RE, Jeromin A, Jochim JM, Kinnunen M, Lau C, Lazarz ET, Lee C, Lemon TA, Li L, Li Y, Morris JA, Overly CC, Parker PD, Parry SE, Reding M, Royall JJ, Schulkin J, Sequeira PA, Slaughterbeck CR, Smith SC, Sodt AJ, Sunkin SM, Swanson BE, Vawter MP, Williams D, Wohnoutka P, Zielke HR, Geschwind DH, Hof PR, Smith SM, Koch C, Grant S, Jones AR (20 September 2012). "An anatomically comprehensive atlas of the adult human brain transcriptome". Nature. 489 (7416): 391–399. Bibcode:2012Natur.489..391H. doi:10.1038/nature11405. PMC 4243026. PMID 22996553.
Kadarmideen HN, Watson-Haigh NS, Andronicos NM (2011). "Systems biology of ovine intestinal parasite resistance: disease gene modules and biomarkers". Molecular BioSystems. 7 (1): 235–246. doi:10.1039/C0MB00190B. PMID 21072409.
Kogelman LJ, Cirera S, Zhernakova DV, Fredholm M, Franke L, Kadarmideen HN (30 September 2014). "Identification of co-expression gene networks, regulatory genes and pathways for obesity based on adipose tissue RNA Sequencing in a porcine model". BMC Medical Genomics. 7 (1): 57. doi:10.1186/1755-8794-7-57. PMC 4183073. PMID 25270054.
Xue Z, Huang K, Cai C, Cai L, Jiang CY, Feng Y, Liu Z, Zeng Q, Cheng L, Sun YE, Liu JY, Horvath S, Fan G (29 August 2013). "Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing". Nature. 500 (7464): 593–7. Bibcode:2013Natur.500..593X. doi:10.1038/nature12364. PMC 4950944. PMID 23892778.
Horvath S, Zhang Y, Langfelder P, Kahn RS, Boks MP, van Eijk K, van den Berg LH, Ophoff RA (3 October 2012). "Aging effects on DNA methylation modules in human brain and blood tissue". Genome Biology. 13 (10): R97. doi:10.1186/gb-2012-13-10-r97. PMC 4053733. PMID 23034122.
Shirasaki DI, Greiner ER, Al-Ramahi I, Gray M, Boontheung P, Geschwind DH, Botas J, Coppola G, Horvath S, Loo JA, Yang XW (12 July 2012). "Network organization of the huntingtin proteomic interactome in mammalian brain". Neuron. 75 (1): 41–57. doi:10.1016/j.neuron.2012.05.024. PMC 3432264. PMID 22794259.
Tong, Maomeng; Li, Xiaoxiao; Wegener Parfrey, Laura; Roth, Bennett; Ippoliti, Andrew; Wei, Bo; Borneman, James; McGovern, Dermot P. B.; Frank, Daniel N.; Li, Ellen; Horvath, Steve; Knight, Rob; Braun, Jonathan (2013). "A Modular Organization of the Human Intestinal Mucosal Microbiota and Its Association with Inflammatory Bowel Disease". PLOS ONE. 8 (11): e80702. doi:10.1371/JOURNAL.PONE.0080702. PMC 3834335. PMID 24260458.
Mumford JA, Horvath S, Oldham MC, Langfelder P, Geschwind DH, Poldrack RA (1 October 2010). "Detecting network modules in fMRI time series: a weighted network analysis approach". NeuroImage. 52 (4): 1465–76. doi:10.1016/j.neuroimage.2010.05.047. PMC 3632300. PMID 20553896.
Langfelder P, Horvath S (29 December 2008). "WGCNA: an R package for weighted correlation network analysis". BMC Bioinformatics. 9: 559. doi:10.1186/1471-2105-9-559. PMC 2631488. PMID 19114008.

harvard.edu

ui.adsabs.harvard.edu

Langfelder P, Mischel PS, Horvath S, Ravasi T (17 April 2013). "When Is Hub Gene Selection Better than Standard Meta-Analysis?". PLOS ONE. 8 (4): e61505. Bibcode:2013PLoSO...861505L. doi:10.1371/journal.pone.0061505. PMC 3629234. PMID 23613865.
Horvath S, Dong J (2008). "Geometric Interpretation of Gene Coexpression Network Analysis". PLOS Computational Biology. 4 (8): e1000117. Bibcode:2008PLSCB...4E0117H. doi:10.1371/journal.pcbi.1000117. PMC 2446438. PMID 18704157.
Langfelder P, Luo R, Oldham MC, Horvath S (20 January 2011). "Is my network module preserved and reproducible?". PLOS Computational Biology. 7 (1): e1001057. Bibcode:2011PLSCB...7E1057L. doi:10.1371/journal.pcbi.1001057. PMC 3024255. PMID 21283776.
Ravasz E, Somera AL, Mongru DA, Oltvai ZN, Barabasi AL (2002). "Hierarchical organization of modularity in metabolic networks". Science. 297 (5586): 1551–1555. arXiv:cond-mat/0209244. Bibcode:2002Sci...297.1551R. doi:10.1126/science.1073374. PMID 12202830. S2CID 14452443.
Agrahari, Rupesh; Foroushani, Amir; Docking, T. Roderick; Chang, Linda; Duns, Gerben; Hudoba, Monika; Karsan, Aly; Zare, Habil (3 May 2018). "Applications of Bayesian network models in predicting types of hematological malignancies". Scientific Reports. 8 (1): 6951. Bibcode:2018NatSR...8.6951A. doi:10.1038/s41598-018-24758-5. ISSN 2045-2322. PMC 5934387. PMID 29725024.
Horvath S, Zhang B, Carlson M, Lu KV, Zhu S, Felciano RM, Laurance MF, Zhao W, Shu Q, Lee Y, Scheck AC, Liau LM, Wu H, Geschwind DH, Febbo PG, Kornblum HI, Cloughesy TF, Nelson SF, Mischel PS (2006). "Analysis of Oncogenic Signaling Networks in Glioblastoma Identifies ASPM as a Novel Molecular Target". PNAS. 103 (46): 17402–17407. Bibcode:2006PNAS..10317402H. doi:10.1073/pnas.0608396103. PMC 1635024. PMID 17090670.
Chen Y, Zhu J, Lum PY, Yang X, Pinto S, MacNeil DJ, Zhang C, Lamb J, Edwards S, Sieberts SK, Leonardson A, Castellini LW, Wang S, Champy MF, Zhang B, Emilsson V, Doss S, Ghazalpour A, Horvath S, Drake TA, Lusis AJ, Schadt EE (27 March 2008). "Variations in DNA elucidate molecular networks that cause disease". Nature. 452 (7186): 429–35. Bibcode:2008Natur.452..429C. doi:10.1038/nature06757. PMC 2841398. PMID 18344982.
Hawrylycz MJ, Lein ES, Guillozet-Bongaarts AL, Shen EH, Ng L, Miller JA, van de Lagemaat LN, Smith KA, Ebbert A, Riley ZL, Abajian C, Beckmann CF, Bernard A, Bertagnolli D, Boe AF, Cartagena PM, Chakravarty MM, Chapin M, Chong J, Dalley RA, David Daly B, Dang C, Datta S, Dee N, Dolbeare TA, Faber V, Feng D, Fowler DR, Goldy J, Gregor BW, Haradon Z, Haynor DR, Hohmann JG, Horvath S, Howard RE, Jeromin A, Jochim JM, Kinnunen M, Lau C, Lazarz ET, Lee C, Lemon TA, Li L, Li Y, Morris JA, Overly CC, Parker PD, Parry SE, Reding M, Royall JJ, Schulkin J, Sequeira PA, Slaughterbeck CR, Smith SC, Sodt AJ, Sunkin SM, Swanson BE, Vawter MP, Williams D, Wohnoutka P, Zielke HR, Geschwind DH, Hof PR, Smith SM, Koch C, Grant S, Jones AR (20 September 2012). "An anatomically comprehensive atlas of the adult human brain transcriptome". Nature. 489 (7416): 391–399. Bibcode:2012Natur.489..391H. doi:10.1038/nature11405. PMC 4243026. PMID 22996553.
Xue Z, Huang K, Cai C, Cai L, Jiang CY, Feng Y, Liu Z, Zeng Q, Cheng L, Sun YE, Liu JY, Horvath S, Fan G (29 August 2013). "Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing". Nature. 500 (7464): 593–7. Bibcode:2013Natur.500..593X. doi:10.1038/nature12364. PMC 4950944. PMID 23892778.

nih.gov

pubmed.ncbi.nlm.nih.gov

Langfelder P, Mischel PS, Horvath S, Ravasi T (17 April 2013). "When Is Hub Gene Selection Better than Standard Meta-Analysis?". PLOS ONE. 8 (4): e61505. Bibcode:2013PLoSO...861505L. doi:10.1371/journal.pone.0061505. PMC 3629234. PMID 23613865.
Zhang B, Horvath S (2005). "A general framework for weighted gene co-expression network analysis" (PDF). Statistical Applications in Genetics and Molecular Biology. 4: 17. CiteSeerX 10.1.1.471.9599. doi:10.2202/1544-6115.1128. PMID 16646834. S2CID 7756201. Archived from the original (PDF) on 2020-09-28. Retrieved 2013-11-29.
Horvath S, Dong J (2008). "Geometric Interpretation of Gene Coexpression Network Analysis". PLOS Computational Biology. 4 (8): e1000117. Bibcode:2008PLSCB...4E0117H. doi:10.1371/journal.pcbi.1000117. PMC 2446438. PMID 18704157.
Oldham MC, Langfelder P, Horvath S (12 June 2012). "Network methods for describing sample relationships in genomic datasets: application to Huntington's disease". BMC Systems Biology. 6: 63. doi:10.1186/1752-0509-6-63. PMC 3441531. PMID 22691535.
Langfelder P, Luo R, Oldham MC, Horvath S (20 January 2011). "Is my network module preserved and reproducible?". PLOS Computational Biology. 7 (1): e1001057. Bibcode:2011PLSCB...7E1057L. doi:10.1371/journal.pcbi.1001057. PMC 3024255. PMID 21283776.
Dong J, Horvath S (4 June 2007). "Understanding network concepts in modules". BMC Systems Biology. 1: 24. doi:10.1186/1752-0509-1-24. PMC 3238286. PMID 17547772.
Ranola JM, Langfelder P, Lange K, Horvath S (14 March 2013). "Cluster and propensity based approximation of a network". BMC Systems Biology. 7: 21. doi:10.1186/1752-0509-7-21. PMC 3663730. PMID 23497424.
Ravasz E, Somera AL, Mongru DA, Oltvai ZN, Barabasi AL (2002). "Hierarchical organization of modularity in metabolic networks". Science. 297 (5586): 1551–1555. arXiv:cond-mat/0209244. Bibcode:2002Sci...297.1551R. doi:10.1126/science.1073374. PMID 12202830. S2CID 14452443.
Yip AM, Horvath S (24 January 2007). "Gene network interconnectedness and the generalized topological overlap measure". BMC Bioinformatics. 8: 22. doi:10.1186/1471-2105-8-22. PMC 1797055. PMID 17250769.
Langfelder P, Zhang B, Horvath S (2007). "Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut library for R". Bioinformatics. 24 (5): 719–20. doi:10.1093/bioinformatics/btm563. PMID 18024473. S2CID 1095190.
Foroushani A, Agrahari R, Docking R, Chang L, Duns G, Hudoba M, Karsan A, Zare H (16 March 2017). "Large-scale gene network analysis reveals the significance of extracellular matrix pathway and homeobox genes in acute myeloid leukemia: an introduction to the Pigengene package and its applications". BMC Medical Genomics. 10 (1): 16. doi:10.1186/s12920-017-0253-6. PMC 5353782. PMID 28298217.
Agrahari, Rupesh; Foroushani, Amir; Docking, T. Roderick; Chang, Linda; Duns, Gerben; Hudoba, Monika; Karsan, Aly; Zare, Habil (3 May 2018). "Applications of Bayesian network models in predicting types of hematological malignancies". Scientific Reports. 8 (1): 6951. Bibcode:2018NatSR...8.6951A. doi:10.1038/s41598-018-24758-5. ISSN 2045-2322. PMC 5934387. PMID 29725024.
Langfelder P, Horvath S (2007). "Eigengene networks for studying the relationships between co-expression modules". BMC Systems Biology. 2007 (1): 54. doi:10.1186/1752-0509-1-54. PMC 2267703. PMID 18031580.
Horvath S, Zhang B, Carlson M, Lu KV, Zhu S, Felciano RM, Laurance MF, Zhao W, Shu Q, Lee Y, Scheck AC, Liau LM, Wu H, Geschwind DH, Febbo PG, Kornblum HI, Cloughesy TF, Nelson SF, Mischel PS (2006). "Analysis of Oncogenic Signaling Networks in Glioblastoma Identifies ASPM as a Novel Molecular Target". PNAS. 103 (46): 17402–17407. Bibcode:2006PNAS..10317402H. doi:10.1073/pnas.0608396103. PMC 1635024. PMID 17090670.
Hartung, Thomas; Kleensang, Andre; Tran, Vy; Maertens, Alexandra (2018). "Weighted Gene Correlation Network Analysis (WGCNA) Reveals Novel Transcription Factors Associated With Bisphenol A Dose-Response". Frontiers in Genetics. 9: 508. doi:10.3389/fgene.2018.00508. ISSN 1664-8021. PMC 6240694. PMID 30483308.
Chen Y, Zhu J, Lum PY, Yang X, Pinto S, MacNeil DJ, Zhang C, Lamb J, Edwards S, Sieberts SK, Leonardson A, Castellini LW, Wang S, Champy MF, Zhang B, Emilsson V, Doss S, Ghazalpour A, Horvath S, Drake TA, Lusis AJ, Schadt EE (27 March 2008). "Variations in DNA elucidate molecular networks that cause disease". Nature. 452 (7186): 429–35. Bibcode:2008Natur.452..429C. doi:10.1038/nature06757. PMC 2841398. PMID 18344982.
Plaisier CL, Horvath S, Huertas-Vazquez A, Cruz-Bautista I, Herrera MF, Tusie-Luna T, Aguilar-Salinas C, Pajukanta P, Storey JD (11 September 2009). "A Systems Genetics Approach Implicates USF1, FADS3, and Other Causal Candidate Genes for Familial Combined Hyperlipidemia". PLOS Genetics. 5 (9): e1000642. doi:10.1371/journal.pgen.1000642. PMC 2730565. PMID 19750004.
Voineagu I, Wang X, Johnston P, Lowe JK, Tian Y, Horvath S, Mill J, Cantor RM, Blencowe BJ, Geschwind DH (25 May 2011). "Transcriptomic analysis of autistic brain reveals convergent molecular pathology". Nature. 474 (7351): 380–4. doi:10.1038/nature10110. PMC 3607626. PMID 21614001.
Hawrylycz MJ, Lein ES, Guillozet-Bongaarts AL, Shen EH, Ng L, Miller JA, van de Lagemaat LN, Smith KA, Ebbert A, Riley ZL, Abajian C, Beckmann CF, Bernard A, Bertagnolli D, Boe AF, Cartagena PM, Chakravarty MM, Chapin M, Chong J, Dalley RA, David Daly B, Dang C, Datta S, Dee N, Dolbeare TA, Faber V, Feng D, Fowler DR, Goldy J, Gregor BW, Haradon Z, Haynor DR, Hohmann JG, Horvath S, Howard RE, Jeromin A, Jochim JM, Kinnunen M, Lau C, Lazarz ET, Lee C, Lemon TA, Li L, Li Y, Morris JA, Overly CC, Parker PD, Parry SE, Reding M, Royall JJ, Schulkin J, Sequeira PA, Slaughterbeck CR, Smith SC, Sodt AJ, Sunkin SM, Swanson BE, Vawter MP, Williams D, Wohnoutka P, Zielke HR, Geschwind DH, Hof PR, Smith SM, Koch C, Grant S, Jones AR (20 September 2012). "An anatomically comprehensive atlas of the adult human brain transcriptome". Nature. 489 (7416): 391–399. Bibcode:2012Natur.489..391H. doi:10.1038/nature11405. PMC 4243026. PMID 22996553.
Kadarmideen HN, Watson-Haigh NS, Andronicos NM (2011). "Systems biology of ovine intestinal parasite resistance: disease gene modules and biomarkers". Molecular BioSystems. 7 (1): 235–246. doi:10.1039/C0MB00190B. PMID 21072409.
Kogelman LJ, Cirera S, Zhernakova DV, Fredholm M, Franke L, Kadarmideen HN (30 September 2014). "Identification of co-expression gene networks, regulatory genes and pathways for obesity based on adipose tissue RNA Sequencing in a porcine model". BMC Medical Genomics. 7 (1): 57. doi:10.1186/1755-8794-7-57. PMC 4183073. PMID 25270054.
Xue Z, Huang K, Cai C, Cai L, Jiang CY, Feng Y, Liu Z, Zeng Q, Cheng L, Sun YE, Liu JY, Horvath S, Fan G (29 August 2013). "Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing". Nature. 500 (7464): 593–7. Bibcode:2013Natur.500..593X. doi:10.1038/nature12364. PMC 4950944. PMID 23892778.
Horvath S, Zhang Y, Langfelder P, Kahn RS, Boks MP, van Eijk K, van den Berg LH, Ophoff RA (3 October 2012). "Aging effects on DNA methylation modules in human brain and blood tissue". Genome Biology. 13 (10): R97. doi:10.1186/gb-2012-13-10-r97. PMC 4053733. PMID 23034122.
Shirasaki DI, Greiner ER, Al-Ramahi I, Gray M, Boontheung P, Geschwind DH, Botas J, Coppola G, Horvath S, Loo JA, Yang XW (12 July 2012). "Network organization of the huntingtin proteomic interactome in mammalian brain". Neuron. 75 (1): 41–57. doi:10.1016/j.neuron.2012.05.024. PMC 3432264. PMID 22794259.
Tong, Maomeng; Li, Xiaoxiao; Wegener Parfrey, Laura; Roth, Bennett; Ippoliti, Andrew; Wei, Bo; Borneman, James; McGovern, Dermot P. B.; Frank, Daniel N.; Li, Ellen; Horvath, Steve; Knight, Rob; Braun, Jonathan (2013). "A Modular Organization of the Human Intestinal Mucosal Microbiota and Its Association with Inflammatory Bowel Disease". PLOS ONE. 8 (11): e80702. doi:10.1371/JOURNAL.PONE.0080702. PMC 3834335. PMID 24260458.
Mumford JA, Horvath S, Oldham MC, Langfelder P, Geschwind DH, Poldrack RA (1 October 2010). "Detecting network modules in fMRI time series: a weighted network analysis approach". NeuroImage. 52 (4): 1465–76. doi:10.1016/j.neuroimage.2010.05.047. PMC 3632300. PMID 20553896.
Langfelder P, Horvath S (29 December 2008). "WGCNA: an R package for weighted correlation network analysis". BMC Bioinformatics. 9: 559. doi:10.1186/1471-2105-9-559. PMC 2631488. PMID 19114008.

ncbi.nlm.nih.gov

Langfelder P, Mischel PS, Horvath S, Ravasi T (17 April 2013). "When Is Hub Gene Selection Better than Standard Meta-Analysis?". PLOS ONE. 8 (4): e61505. Bibcode:2013PLoSO...861505L. doi:10.1371/journal.pone.0061505. PMC 3629234. PMID 23613865.
Horvath S, Dong J (2008). "Geometric Interpretation of Gene Coexpression Network Analysis". PLOS Computational Biology. 4 (8): e1000117. Bibcode:2008PLSCB...4E0117H. doi:10.1371/journal.pcbi.1000117. PMC 2446438. PMID 18704157.
Oldham MC, Langfelder P, Horvath S (12 June 2012). "Network methods for describing sample relationships in genomic datasets: application to Huntington's disease". BMC Systems Biology. 6: 63. doi:10.1186/1752-0509-6-63. PMC 3441531. PMID 22691535.
Langfelder P, Luo R, Oldham MC, Horvath S (20 January 2011). "Is my network module preserved and reproducible?". PLOS Computational Biology. 7 (1): e1001057. Bibcode:2011PLSCB...7E1057L. doi:10.1371/journal.pcbi.1001057. PMC 3024255. PMID 21283776.
Dong J, Horvath S (4 June 2007). "Understanding network concepts in modules". BMC Systems Biology. 1: 24. doi:10.1186/1752-0509-1-24. PMC 3238286. PMID 17547772.
Ranola JM, Langfelder P, Lange K, Horvath S (14 March 2013). "Cluster and propensity based approximation of a network". BMC Systems Biology. 7: 21. doi:10.1186/1752-0509-7-21. PMC 3663730. PMID 23497424.
Yip AM, Horvath S (24 January 2007). "Gene network interconnectedness and the generalized topological overlap measure". BMC Bioinformatics. 8: 22. doi:10.1186/1471-2105-8-22. PMC 1797055. PMID 17250769.
Foroushani A, Agrahari R, Docking R, Chang L, Duns G, Hudoba M, Karsan A, Zare H (16 March 2017). "Large-scale gene network analysis reveals the significance of extracellular matrix pathway and homeobox genes in acute myeloid leukemia: an introduction to the Pigengene package and its applications". BMC Medical Genomics. 10 (1): 16. doi:10.1186/s12920-017-0253-6. PMC 5353782. PMID 28298217.
Agrahari, Rupesh; Foroushani, Amir; Docking, T. Roderick; Chang, Linda; Duns, Gerben; Hudoba, Monika; Karsan, Aly; Zare, Habil (3 May 2018). "Applications of Bayesian network models in predicting types of hematological malignancies". Scientific Reports. 8 (1): 6951. Bibcode:2018NatSR...8.6951A. doi:10.1038/s41598-018-24758-5. ISSN 2045-2322. PMC 5934387. PMID 29725024.
Langfelder P, Horvath S (2007). "Eigengene networks for studying the relationships between co-expression modules". BMC Systems Biology. 2007 (1): 54. doi:10.1186/1752-0509-1-54. PMC 2267703. PMID 18031580.
Horvath S, Zhang B, Carlson M, Lu KV, Zhu S, Felciano RM, Laurance MF, Zhao W, Shu Q, Lee Y, Scheck AC, Liau LM, Wu H, Geschwind DH, Febbo PG, Kornblum HI, Cloughesy TF, Nelson SF, Mischel PS (2006). "Analysis of Oncogenic Signaling Networks in Glioblastoma Identifies ASPM as a Novel Molecular Target". PNAS. 103 (46): 17402–17407. Bibcode:2006PNAS..10317402H. doi:10.1073/pnas.0608396103. PMC 1635024. PMID 17090670.
Hartung, Thomas; Kleensang, Andre; Tran, Vy; Maertens, Alexandra (2018). "Weighted Gene Correlation Network Analysis (WGCNA) Reveals Novel Transcription Factors Associated With Bisphenol A Dose-Response". Frontiers in Genetics. 9: 508. doi:10.3389/fgene.2018.00508. ISSN 1664-8021. PMC 6240694. PMID 30483308.
Chen Y, Zhu J, Lum PY, Yang X, Pinto S, MacNeil DJ, Zhang C, Lamb J, Edwards S, Sieberts SK, Leonardson A, Castellini LW, Wang S, Champy MF, Zhang B, Emilsson V, Doss S, Ghazalpour A, Horvath S, Drake TA, Lusis AJ, Schadt EE (27 March 2008). "Variations in DNA elucidate molecular networks that cause disease". Nature. 452 (7186): 429–35. Bibcode:2008Natur.452..429C. doi:10.1038/nature06757. PMC 2841398. PMID 18344982.
Plaisier CL, Horvath S, Huertas-Vazquez A, Cruz-Bautista I, Herrera MF, Tusie-Luna T, Aguilar-Salinas C, Pajukanta P, Storey JD (11 September 2009). "A Systems Genetics Approach Implicates USF1, FADS3, and Other Causal Candidate Genes for Familial Combined Hyperlipidemia". PLOS Genetics. 5 (9): e1000642. doi:10.1371/journal.pgen.1000642. PMC 2730565. PMID 19750004.
Voineagu I, Wang X, Johnston P, Lowe JK, Tian Y, Horvath S, Mill J, Cantor RM, Blencowe BJ, Geschwind DH (25 May 2011). "Transcriptomic analysis of autistic brain reveals convergent molecular pathology". Nature. 474 (7351): 380–4. doi:10.1038/nature10110. PMC 3607626. PMID 21614001.
Hawrylycz MJ, Lein ES, Guillozet-Bongaarts AL, Shen EH, Ng L, Miller JA, van de Lagemaat LN, Smith KA, Ebbert A, Riley ZL, Abajian C, Beckmann CF, Bernard A, Bertagnolli D, Boe AF, Cartagena PM, Chakravarty MM, Chapin M, Chong J, Dalley RA, David Daly B, Dang C, Datta S, Dee N, Dolbeare TA, Faber V, Feng D, Fowler DR, Goldy J, Gregor BW, Haradon Z, Haynor DR, Hohmann JG, Horvath S, Howard RE, Jeromin A, Jochim JM, Kinnunen M, Lau C, Lazarz ET, Lee C, Lemon TA, Li L, Li Y, Morris JA, Overly CC, Parker PD, Parry SE, Reding M, Royall JJ, Schulkin J, Sequeira PA, Slaughterbeck CR, Smith SC, Sodt AJ, Sunkin SM, Swanson BE, Vawter MP, Williams D, Wohnoutka P, Zielke HR, Geschwind DH, Hof PR, Smith SM, Koch C, Grant S, Jones AR (20 September 2012). "An anatomically comprehensive atlas of the adult human brain transcriptome". Nature. 489 (7416): 391–399. Bibcode:2012Natur.489..391H. doi:10.1038/nature11405. PMC 4243026. PMID 22996553.
Kogelman LJ, Cirera S, Zhernakova DV, Fredholm M, Franke L, Kadarmideen HN (30 September 2014). "Identification of co-expression gene networks, regulatory genes and pathways for obesity based on adipose tissue RNA Sequencing in a porcine model". BMC Medical Genomics. 7 (1): 57. doi:10.1186/1755-8794-7-57. PMC 4183073. PMID 25270054.
Xue Z, Huang K, Cai C, Cai L, Jiang CY, Feng Y, Liu Z, Zeng Q, Cheng L, Sun YE, Liu JY, Horvath S, Fan G (29 August 2013). "Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing". Nature. 500 (7464): 593–7. Bibcode:2013Natur.500..593X. doi:10.1038/nature12364. PMC 4950944. PMID 23892778.
Horvath S, Zhang Y, Langfelder P, Kahn RS, Boks MP, van Eijk K, van den Berg LH, Ophoff RA (3 October 2012). "Aging effects on DNA methylation modules in human brain and blood tissue". Genome Biology. 13 (10): R97. doi:10.1186/gb-2012-13-10-r97. PMC 4053733. PMID 23034122.
Shirasaki DI, Greiner ER, Al-Ramahi I, Gray M, Boontheung P, Geschwind DH, Botas J, Coppola G, Horvath S, Loo JA, Yang XW (12 July 2012). "Network organization of the huntingtin proteomic interactome in mammalian brain". Neuron. 75 (1): 41–57. doi:10.1016/j.neuron.2012.05.024. PMC 3432264. PMID 22794259.
Tong, Maomeng; Li, Xiaoxiao; Wegener Parfrey, Laura; Roth, Bennett; Ippoliti, Andrew; Wei, Bo; Borneman, James; McGovern, Dermot P. B.; Frank, Daniel N.; Li, Ellen; Horvath, Steve; Knight, Rob; Braun, Jonathan (2013). "A Modular Organization of the Human Intestinal Mucosal Microbiota and Its Association with Inflammatory Bowel Disease". PLOS ONE. 8 (11): e80702. doi:10.1371/JOURNAL.PONE.0080702. PMC 3834335. PMID 24260458.
Mumford JA, Horvath S, Oldham MC, Langfelder P, Geschwind DH, Poldrack RA (1 October 2010). "Detecting network modules in fMRI time series: a weighted network analysis approach". NeuroImage. 52 (4): 1465–76. doi:10.1016/j.neuroimage.2010.05.047. PMC 3632300. PMID 20553896.
Langfelder P, Horvath S (29 December 2008). "WGCNA: an R package for weighted correlation network analysis". BMC Bioinformatics. 9: 559. doi:10.1186/1471-2105-9-559. PMC 2631488. PMID 19114008.

psu.edu

citeseerx.ist.psu.edu

Zhang B, Horvath S (2005). "A general framework for weighted gene co-expression network analysis" (PDF). Statistical Applications in Genetics and Molecular Biology. 4: 17. CiteSeerX 10.1.1.471.9599. doi:10.2202/1544-6115.1128. PMID 16646834. S2CID 7756201. Archived from the original (PDF) on 2020-09-28. Retrieved 2013-11-29.

semanticscholar.org

api.semanticscholar.org

Zhang B, Horvath S (2005). "A general framework for weighted gene co-expression network analysis" (PDF). Statistical Applications in Genetics and Molecular Biology. 4: 17. CiteSeerX 10.1.1.471.9599. doi:10.2202/1544-6115.1128. PMID 16646834. S2CID 7756201. Archived from the original (PDF) on 2020-09-28. Retrieved 2013-11-29.
Ravasz E, Somera AL, Mongru DA, Oltvai ZN, Barabasi AL (2002). "Hierarchical organization of modularity in metabolic networks". Science. 297 (5586): 1551–1555. arXiv:cond-mat/0209244. Bibcode:2002Sci...297.1551R. doi:10.1126/science.1073374. PMID 12202830. S2CID 14452443.
Langfelder P, Zhang B, Horvath S (2007). "Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut library for R". Bioinformatics. 24 (5): 719–20. doi:10.1093/bioinformatics/btm563. PMID 18024473. S2CID 1095190.

tigem.it

dibernardo.tigem.it

Zhang B, Horvath S (2005). "A general framework for weighted gene co-expression network analysis" (PDF). Statistical Applications in Genetics and Molecular Biology. 4: 17. CiteSeerX 10.1.1.471.9599. doi:10.2202/1544-6115.1128. PMID 16646834. S2CID 7756201. Archived from the original (PDF) on 2020-09-28. Retrieved 2013-11-29.

web.archive.org

Zhang B, Horvath S (2005). "A general framework for weighted gene co-expression network analysis" (PDF). Statistical Applications in Genetics and Molecular Biology. 4: 17. CiteSeerX 10.1.1.471.9599. doi:10.2202/1544-6115.1128. PMID 16646834. S2CID 7756201. Archived from the original (PDF) on 2020-09-28. Retrieved 2013-11-29.

worldcat.org

search.worldcat.org

Agrahari, Rupesh; Foroushani, Amir; Docking, T. Roderick; Chang, Linda; Duns, Gerben; Hudoba, Monika; Karsan, Aly; Zare, Habil (3 May 2018). "Applications of Bayesian network models in predicting types of hematological malignancies". Scientific Reports. 8 (1): 6951. Bibcode:2018NatSR...8.6951A. doi:10.1038/s41598-018-24758-5. ISSN 2045-2322. PMC 5934387. PMID 29725024.
Hartung, Thomas; Kleensang, Andre; Tran, Vy; Maertens, Alexandra (2018). "Weighted Gene Correlation Network Analysis (WGCNA) Reveals Novel Transcription Factors Associated With Bisphenol A Dose-Response". Frontiers in Genetics. 9: 508. doi:10.3389/fgene.2018.00508. ISSN 1664-8021. PMC 6240694. PMID 30483308.