Y chromosome (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Y chromosome" in English language version.

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doi.org

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Devlin RH, Nagahama Y (2002-06-21). "Sex determination and sex differentiation in fish: an overview of genetic, physiological, and environmental influences". Aquaculture. Sex determination and sex differentation in fish. 208 (3): 191–364. Bibcode:2002Aquac.208..191D. doi:10.1016/S0044-8486(02)00057-1. ISSN 0044-8486.
Kuwamura T, Sunobe T, Sakai Y, Kadota T, Sawada K (2020-07-01). "Hermaphroditism in fishes: an annotated list of species, phylogeny, and mating system". Ichthyological Research. 67 (3): 341–360. Bibcode:2020IchtR..67..341K. doi:10.1007/s10228-020-00754-6. ISSN 1616-3915. S2CID 254168012.
Muller HJ (1914). "A gene for the fourth chromosome of Drosophila". Journal of Experimental Zoology. 17 (3): 325–336. Bibcode:1914JEZ....17..325M. doi:10.1002/jez.1400170303.
Lahn BT, Page DC (October 1999). "Four evolutionary strata on the human X chromosome". Science. 286 (5441): 964–7. doi:10.1126/science.286.5441.964. PMID 10542153.
Graves JA (March 2006). "Sex chromosome specialization and degeneration in mammals". Cell. 124 (5): 901–914. doi:10.1016/j.cell.2006.02.024. PMID 16530039. S2CID 8379688.
Graves JA, Koina E, Sankovic N (June 2006). "How the gene content of human sex chromosomes evolved". Current Opinion in Genetics & Development. 16 (3): 219–224. doi:10.1016/j.gde.2006.04.007. PMID 16650758.
Bachtrog D (February 2013). "Y-chromosome evolution: emerging insights into processes of Y-chromosome degeneration". Nature Reviews. Genetics. 14 (2): 113–124. doi:10.1038/nrg3366. PMC 4120474. PMID 23329112.
Warren WC, Hillier LW, Marshall Graves JA, Birney E, Ponting CP, Grützner F, et al. (May 2008). "Genome analysis of the platypus reveals unique signatures of evolution". Nature. 453 (7192): 175–183. Bibcode:2008Natur.453..175W. doi:10.1038/nature06936. PMC 2803040. PMID 18464734.
Veyrunes F, Waters PD, Miethke P, Rens W, McMillan D, Alsop AE, et al. (June 2008). "Bird-like sex chromosomes of platypus imply recent origin of mammal sex chromosomes". Genome Research. 18 (6): 965–973. doi:10.1101/gr.7101908. PMC 2413164. PMID 18463302.
Grützner F, Rens W, Tsend-Ayush E, El-Mogharbel N, O'Brien PC, Jones RC, et al. (December 2004). "In the platypus a meiotic chain of ten sex chromosomes shares genes with the bird Z and mammal X chromosomes". Nature. 432 (7019): 913–7. Bibcode:2004Natur.432..913G. doi:10.1038/nature03021. PMID 15502814. S2CID 4379897.
Watson JM, Riggs A, Graves JA (October 1992). "Gene mapping studies confirm the homology between the platypus X and echidna X1 chromosomes and identify a conserved ancestral monotreme X chromosome". Chromosoma. 101 (10): 596–601. doi:10.1007/BF00360536. PMID 1424984. S2CID 26978106.
Peneder P, Wallner B, Vogl C (October 2017). "Exchange of genetic information between therian X and Y chromosome gametologs in old evolutionary strata". Ecology and Evolution. 7 (20): 8478–8487. Bibcode:2017EcoEv...7.8478P. doi:10.1002/ece3.3278. PMC 5648654. PMID 29075464.
Dhanoa JK, Mukhopadhyay CS, Arora JS (July 2016). "Y-chromosomal genes affecting male fertility: A review". Vet World. 9 (7): 783–91. doi:10.14202/vetworld.2016.783-791. PMC 4983133. PMID 27536043.
Brookfield JF (October 1995). "Human evolution. Y-chromosome clues to human ancestry". Current Biology. 5 (10): 1114–1115. Bibcode:1995CBio....5.1114B. doi:10.1016/S0960-9822(95)00224-7. PMID 8548280. S2CID 16081591.
Graves JA (2004). "The degenerate Y chromosome--can conversion save it?". Reproduction, Fertility, and Development. 16 (5): 527–534. doi:10.1071/RD03096. PMID 15367368.
Goto H, Peng L, Makova KD (February 2009). "Evolution of X-degenerate Y chromosome genes in greater apes: conservation of gene content in human and gorilla, but not chimpanzee". Journal of Molecular Evolution. 68 (2): 134–144. Bibcode:2009JMolE..68..134G. doi:10.1007/s00239-008-9189-y. PMID 19142680. S2CID 24010421.
Hughes JF, Skaletsky H, Pyntikova T, Minx PJ, Graves T, Rozen S, et al. (September 2005). "Conservation of Y-linked genes during human evolution revealed by comparative sequencing in chimpanzee". Nature. 437 (7055): 100–103. Bibcode:2005Natur.437..100H. doi:10.1038/nature04101. PMID 16136134. S2CID 4418662.
Lindblad-Toh K, Wade CM, Mikkelsen TS, Karlsson EK, Jaffe DB, Kamal M, et al. (December 2005). "Genome sequence, comparative analysis and haplotype structure of the domestic dog". Nature. 438 (7069): 803–819. Bibcode:2005Natur.438..803L. doi:10.1038/nature04338. PMID 16341006.
Brandeis M (May 2018). "New-age ideas about age-old sex: separating meiosis from mating could solve a century-old conundrum". Biological Reviews of the Cambridge Philosophical Society. 93 (2): 801–810. doi:10.1111/brv.12367. PMID 28913952. S2CID 4764175.
Bernstein H, Hopf FA, Michod RE (1987). "The molecular basis of the evolution of sex". Molecular Genetics of Development. Advances in Genetics. Vol. 24. pp. 323–70. doi:10.1016/S0065-2660(08)60012-7. ISBN 9780120176243. PMID 3324702.
Liu Z, Venkatesh SS, Maley CC (October 2008). "Sequence space coverage, entropy of genomes and the potential to detect non-human DNA in human samples". BMC Genomics. 9 (1): 509. doi:10.1186/1471-2164-9-509. PMC 2628393. PMID 18973670. Fig. 6, using the Lempel-Ziv estimators of entropy rate.
Charlesworth B, Charlesworth D (November 2000). "The degeneration of Y chromosomes". Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 355 (1403): 1563–1572. doi:10.1098/rstb.2000.0717. PMC 1692900. PMID 11127901.
Rozen S, Skaletsky H, Marszalek JD, Minx PJ, Cordum HS, Waterston RH, et al. (June 2003). "Abundant gene conversion between arms of palindromes in human and ape Y chromosomes". Nature. 423 (6942): 873–876. Bibcode:2003Natur.423..873R. doi:10.1038/nature01723. PMID 12815433. S2CID 4323263.
Hallast P, Balaresque P, Bowden GR, Ballereau S, Jobling MA (2013). "Recombination dynamics of a human Y-chromosomal palindrome: rapid GC-biased gene conversion, multi-kilobase conversion tracts, and rare inversions". PLOS Genet. 9 (7): e1003666. doi:10.1371/journal.pgen.1003666. PMC 3723533. PMID 23935520.
Bonito M, D'Atanasio E, Ravasini F, Cariati S, Finocchio A, Novelletto A, Trombetta B, Cruciani F (November 2021). "New insights into the evolution of human Y chromosome palindromes through mutation and gene conversion". Hum Mol Genet. 30 (23): 2272–2285. doi:10.1093/hmg/ddab189. PMC 8600007. PMID 34244762.
Marchal JA, Acosta MJ, Bullejos M, Díaz de la Guardia R, Sánchez A (2003). "Sex chromosomes, sex determination, and sex-linked sequences in Microtidae". Cytogenetic and Genome Research. 101 (3–4): 266–273. doi:10.1159/000074347. PMID 14684993. S2CID 10526522.
Wilson MA, Makova KD (2009). "Genomic analyses of sex chromosome evolution". Annual Review of Genomics and Human Genetics. 10 (1): 333–354. doi:10.1146/annurev-genom-082908-150105. PMID 19630566.
Just W, Baumstark A, Süss A, Graphodatsky A, Rens W, Schäfer N, et al. (2007). "Ellobius lutescens: sex determination and sex chromosome". Sexual Development. 1 (4): 211–221. doi:10.1159/000104771. PMID 18391532. S2CID 25939138.
Arakawa Y, Nishida-Umehara C, Matsuda Y, Sutou S, Suzuki H (2002). "X-chromosomal localization of mammalian Y-linked genes in two XO species of the Ryukyu spiny rat". Cytogenetic and Genome Research. 99 (1–4): 303–9. doi:10.1159/000071608. PMID 12900579. S2CID 39633026.
Hoekstra HE, Edwards SV (September 2000). "Multiple origins of XY female mice (genus Akodon): phylogenetic and chromosomal evidence". Proceedings. Biological Sciences. 267 (1455): 1825–31. doi:10.1098/rspb.2000.1217. PMC 1690748. PMID 11052532.
Ortiz MI, Pinna-Senn E, Dalmasso G, Lisanti JA (2009). "Chromosomal aspects and inheritance of the XY female condition in Akodon azarae (Rodentia, Sigmodontinae)". Mammalian Biology. 74 (2): 125–9. Bibcode:2009MamBi..74..125O. doi:10.1016/j.mambio.2008.03.001.
Charlesworth B, Dempsey ND (April 2001). "A model of the evolution of the unusual sex chromosome system of Microtus oregoni". Heredity. 86 (Pt 4): 387–394. doi:10.1046/j.1365-2540.2001.00803.x. PMID 11520338. S2CID 34489270.
Zhou Q, Wang J, Huang L, Nie W, Wang J, Liu Y, et al. (2008). "Neo-sex chromosomes in the black muntjac recapitulate incipient evolution of mammalian sex chromosomes". Genome Biology. 9 (6): R98. doi:10.1186/gb-2008-9-6-r98. PMC 2481430. PMID 18554412.
Hughes JF, Skaletsky H, Page DC (December 2012). "Sequencing of rhesus macaque Y chromosome clarifies origins and evolution of the DAZ (Deleted in AZoospermia) genes". BioEssays. 34 (12): 1035–44. doi:10.1002/bies.201200066. PMC 3581811. PMID 23055411.
Hamilton WD (April 1967). "Extraordinary sex ratios. A sex-ratio theory for sex linkage and inbreeding has new implications in cytogenetics and entomology". Science. 156 (3774): 477–488. Bibcode:1967Sci...156..477H. doi:10.1126/science.156.3774.477. PMID 6021675.
Smith JJ, Voss SR (September 2007). "Bird and mammal sex-chromosome orthologs map to the same autosomal region in a salamander (ambystoma)". Genetics. 177 (1): 607–613. doi:10.1534/genetics.107.072033. PMC 2013703. PMID 17660573.
Viana PF, Ezaz T, de Bello Cioffi M, Liehr T, Al-Rikabi A, Goll LG, et al. (July 2020). "Landscape of snake' sex chromosomes evolution spanning 85 MYR reveals ancestry of sequences despite distinct evolutionary trajectories". Scientific Reports. 10 (1): 12499. Bibcode:2020NatSR..1012499V. doi:10.1038/s41598-020-69349-5. PMC 7385105. PMID 32719365.
Sahara K, Yoshido A, Traut W (January 2012). "Sex chromosome evolution in moths and butterflies". Chromosome Research. 20 (1): 83–94. doi:10.1007/s10577-011-9262-z. hdl:2115/49121. PMID 22187366. S2CID 15130561.
Schartl M (July 2004). "A comparative view on sex determination in medaka". Mechanisms of Development. 121 (7–8): 639–645. doi:10.1016/j.mod.2004.03.001. PMID 15210173. S2CID 17401686.
Cortez D, Marin R, Toledo-Flores D, Froidevaux L, Liechti A, Waters PD, et al. (April 2014). "Origins and functional evolution of Y chromosomes across mammals". Nature. 508 (7497): 488–493. Bibcode:2014Natur.508..488C. doi:10.1038/nature13151. PMID 24759410. S2CID 4462870.
Deakin JE, Graves JA, Rens W (2012). "The evolution of marsupial and monotreme chromosomes". Cytogenetic and Genome Research. 137 (2–4): 113–129. doi:10.1159/000339433. hdl:1885/64794. PMID 22777195.
Rhie A, Nurk S, Cechova M, Hoyt SJ, Taylor DJ, Altemose N, et al. (September 2023). "The complete sequence of a human Y chromosome". Nature. 621 (7978): 344–354. Bibcode:2023Natur.621..344R. doi:10.1038/s41586-023-06457-y. PMC 10752217. PMID 37612512. S2CID 254181409.
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Hallast P, Ebert P, Loftus M, Yilmaz F, Audano PA, Logsdon GA, et al. (September 2023). "Assembly of 43 human Y chromosomes reveals extensive complexity and variation". Nature. 621 (7978): 355–364. Bibcode:2023Natur.621..355H. doi:10.1038/s41586-023-06425-6. PMC 10726138. PMID 37612510. S2CID 261098546.
Sethakulvichai W, Manitpornsut S, Wiboonrat M, Lilakiatsakun W, Assawamakin A, Tongsima S (2012). "Estimation of band level resolutions of human chromosome images". 2012 Ninth International Conference on Computer Science and Software Engineering (JCSSE). pp. 276–282. doi:10.1109/JCSSE.2012.6261965. ISBN 978-1-4673-1921-8. S2CID 16666470.
Pertea M, Salzberg SL (2010). "Between a chicken and a grape: estimating the number of human genes". Genome Biology. 11 (5): 206. doi:10.1186/gb-2010-11-5-206. PMC 2898077. PMID 20441615.
Colaco S, Modi D (February 2018). "Genetics of the human Y chromosome and its association with male infertility". Reproductive Biology and Endocrinology. 16 (1): 14. doi:10.1186/s12958-018-0330-5. PMC 5816366. PMID 29454353.
Veerappa AM, Padakannaya P, Ramachandra NB (August 2013). "Copy number variation-based polymorphism in a new pseudoautosomal region 3 (PAR3) of a human X-chromosome-transposed region (XTR) in the Y chromosome". Functional & Integrative Genomics. 13 (3): 285–293. doi:10.1007/s10142-013-0323-6. PMID 23708688. S2CID 13443194.
Raudsepp T, Chowdhary BP (6 January 2016). "The Eutherian Pseudoautosomal Region". Cytogenetic and Genome Research. 147 (2–3): 81–94. doi:10.1159/000443157. hdl:10576/22940. PMID 26730606.
Zeiher A, Braun T (July 2022). "Mosaic loss of Y chromosome during aging". Science. 377 (6603): 266–7. Bibcode:2022Sci...377..266Z. doi:10.1126/science.add0839. PMID 35857599. S2CID 250579530.
Forsberg LA (May 2017). "Loss of chromosome Y (LOY) in blood cells is associated with increased risk for disease and mortality in aging men". Human Genetics. 136 (5): 657–663. doi:10.1007/s00439-017-1799-2. PMC 5418310. PMID 28424864.
Forsberg LA, Rasi C, Malmqvist N, Davies H, Pasupulati S, Pakalapati G, et al. (June 2014). "Mosaic loss of chromosome Y in peripheral blood is associated with shorter survival and higher risk of cancer". Nature Genetics. 46 (6): 624–8. doi:10.1038/ng.2966. PMC 5536222. PMID 24777449.
Guo X, Dai X, Zhou T, Wang H, Ni J, Xue J, Wang X (April 2020). "Mosaic loss of human Y chromosome: what, how and why". Human Genetics. 139 (4): 421–446. doi:10.1007/s00439-020-02114-w. PMID 32020362. S2CID 211036885.
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ensembl.org

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mar2017.archive.ensembl.org

"Chromosome Y: Chromosome summary — Homo sapiens". Ensembl Release 88. 2017-03-29. Retrieved 2017-05-19.

genenames.org

"Statistics & Downloads for chromosome Y". HUGO Gene Nomenclature Committee. 2017-05-12. Archived from the original on 2017-06-29. Retrieved 2017-05-19.

genengnews.com

LeMieux J (2020-05-29). "On PAR: How X and Y Chromosomes Recombine During Meiosis". GEN — Genetic Engineering and Biotechnology News. Retrieved 2023-11-13.

handle.net

hdl.handle.net

Sahara K, Yoshido A, Traut W (January 2012). "Sex chromosome evolution in moths and butterflies". Chromosome Research. 20 (1): 83–94. doi:10.1007/s10577-011-9262-z. hdl:2115/49121. PMID 22187366. S2CID 15130561.
Deakin JE, Graves JA, Rens W (2012). "The evolution of marsupial and monotreme chromosomes". Cytogenetic and Genome Research. 137 (2–4): 113–129. doi:10.1159/000339433. hdl:1885/64794. PMID 22777195.
Raudsepp T, Chowdhary BP (6 January 2016). "The Eutherian Pseudoautosomal Region". Cytogenetic and Genome Research. 147 (2–3): 81–94. doi:10.1159/000443157. hdl:10576/22940. PMID 26730606.

harvard.edu

ui.adsabs.harvard.edu

Devlin RH, Nagahama Y (2002-06-21). "Sex determination and sex differentiation in fish: an overview of genetic, physiological, and environmental influences". Aquaculture. Sex determination and sex differentation in fish. 208 (3): 191–364. Bibcode:2002Aquac.208..191D. doi:10.1016/S0044-8486(02)00057-1. ISSN 0044-8486.
Kuwamura T, Sunobe T, Sakai Y, Kadota T, Sawada K (2020-07-01). "Hermaphroditism in fishes: an annotated list of species, phylogeny, and mating system". Ichthyological Research. 67 (3): 341–360. Bibcode:2020IchtR..67..341K. doi:10.1007/s10228-020-00754-6. ISSN 1616-3915. S2CID 254168012.
Muller HJ (1914). "A gene for the fourth chromosome of Drosophila". Journal of Experimental Zoology. 17 (3): 325–336. Bibcode:1914JEZ....17..325M. doi:10.1002/jez.1400170303.
Warren WC, Hillier LW, Marshall Graves JA, Birney E, Ponting CP, Grützner F, et al. (May 2008). "Genome analysis of the platypus reveals unique signatures of evolution". Nature. 453 (7192): 175–183. Bibcode:2008Natur.453..175W. doi:10.1038/nature06936. PMC 2803040. PMID 18464734.
Grützner F, Rens W, Tsend-Ayush E, El-Mogharbel N, O'Brien PC, Jones RC, et al. (December 2004). "In the platypus a meiotic chain of ten sex chromosomes shares genes with the bird Z and mammal X chromosomes". Nature. 432 (7019): 913–7. Bibcode:2004Natur.432..913G. doi:10.1038/nature03021. PMID 15502814. S2CID 4379897.
Peneder P, Wallner B, Vogl C (October 2017). "Exchange of genetic information between therian X and Y chromosome gametologs in old evolutionary strata". Ecology and Evolution. 7 (20): 8478–8487. Bibcode:2017EcoEv...7.8478P. doi:10.1002/ece3.3278. PMC 5648654. PMID 29075464.
Brookfield JF (October 1995). "Human evolution. Y-chromosome clues to human ancestry". Current Biology. 5 (10): 1114–1115. Bibcode:1995CBio....5.1114B. doi:10.1016/S0960-9822(95)00224-7. PMID 8548280. S2CID 16081591.
Goto H, Peng L, Makova KD (February 2009). "Evolution of X-degenerate Y chromosome genes in greater apes: conservation of gene content in human and gorilla, but not chimpanzee". Journal of Molecular Evolution. 68 (2): 134–144. Bibcode:2009JMolE..68..134G. doi:10.1007/s00239-008-9189-y. PMID 19142680. S2CID 24010421.
Hughes JF, Skaletsky H, Pyntikova T, Minx PJ, Graves T, Rozen S, et al. (September 2005). "Conservation of Y-linked genes during human evolution revealed by comparative sequencing in chimpanzee". Nature. 437 (7055): 100–103. Bibcode:2005Natur.437..100H. doi:10.1038/nature04101. PMID 16136134. S2CID 4418662.
Lindblad-Toh K, Wade CM, Mikkelsen TS, Karlsson EK, Jaffe DB, Kamal M, et al. (December 2005). "Genome sequence, comparative analysis and haplotype structure of the domestic dog". Nature. 438 (7069): 803–819. Bibcode:2005Natur.438..803L. doi:10.1038/nature04338. PMID 16341006.
Rozen S, Skaletsky H, Marszalek JD, Minx PJ, Cordum HS, Waterston RH, et al. (June 2003). "Abundant gene conversion between arms of palindromes in human and ape Y chromosomes". Nature. 423 (6942): 873–876. Bibcode:2003Natur.423..873R. doi:10.1038/nature01723. PMID 12815433. S2CID 4323263.
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