Alineamiento de secuencias (Spanish Wikipedia)

Analysis of information sources in references of the Wikipedia article "Alineamiento de secuencias" in Spanish language version.

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archive.org

Felsenstein J. (2004). Inferring Phylogenies. Sinauer Associates: Sunderland, MA. ISBN 0-87893-177-5.

cornell.edu

cs.cornell.edu

Barzilay R, Lee L. (2002). «Bootstrapping Lexical Choice via Multiple-Sequence Alignment». Proceedings of the Conference on Empirical Methods in Natural Language Processing (EMNLP): 164-171.

doi.org

dx.doi.org

Schneider TD, Stephens RM (1990). «Sequence logos: a new way to display consensus sequences». Nucleic Acids Res 18: 6097-6100. PMID 2172928. doi:10.1093/nar/18.20.6097.
Brudno M, Malde S, Poliakov A, Do CB, Couronne O, Dubchak I, Batzoglou S (2003). «Glocal alignment: finding rearrangements during alignment». Bioinformatics. 19 Suppl 1: i54-62. PMID 12855437. doi:10.1093/bioinformatics/btg1005.
Brudno M, Poliakov A, Salamov A, Cooper GM, Sidow A, Rubin EM, Solovyev V, Batzoglou S, Dubchak I (2004). «Automate whole-genome multiple alignment of rat, mouse, and human». Genome Research 14: 685-692. doi:10.1101/gr.2067704.
Lipman DJ, Altschul SF, Kececioglu JD (1989). «A tool for multiple sequence alignment». Proc Natl Acad Sci U S A 86: 4412-5. PMID 2734293. doi:10.1073/pnas.86.12.4412.
Higgins DG, Sharp PM (1988). «CLUSTAL: a package for performing multiple sequence alignment on a microcomputer». Gene 73 (1): 237-44. PMID 3243435. doi:10.1016/0378-1119(88)90330-7.
Thompson JD, Higgins DG, Gibson TJ. (1994). «CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice». Nucleic Acids Res 22: 4673-80. PMID 7984417. doi:10.1093/nar/22.22.4673.
Chenna R, Sugawara H, Koike T, Lopez R, Gibson TJ, Higgins DG, Thompson JD. (2003). «Multiple sequence alignment with the Clustal series of programs». Nucleic Acids Res 31: 3497-500. PMID 12824352. doi:10.1093/nar/gkg500.
Notredame C, Higgins DG, Heringa J. (2000). «T-Coffee: A novel method for fast and accurate multiple sequence alignment». J Mol Biol 302 (1): 205-17. PMID 10964570. doi:10.1006/jmbi.2000.4042.
Hirosawa M, Totoki Y, Hoshida M, Ishikawa M. (1995). «Comprehensive study on iterative algorithms of multiple sequence alignment». Comput Appl Biosci 11: 13-8. PMID 7796270. doi:10.1093/bioinformatics/11.1.13.
Karplus K, Barrett C, Hughey R. (1998). «Hidden Márkov models for detecting remote protein homologies». Bioinformatics 14 (10): 846-856. PMID 9927713. doi:10.1093/bioinformatics/14.10.846.
Zhang Y, Skolnick J. (2005). «The protein structure prediction problem could be solved using the current PDB library». Proc Natl Acad Sci U S A 102: 1029-34. PMID 15653774. doi:10.1073/pnas.0407152101.
Orengo CA, Michie AD, Jones S, Jones DT, Swindells MB, Thornton JM (1997). «CATH--a hierarchic classification of protein domain structures». Structure 5: 1093-108. PMID 9309224. doi:10.1016/S0969-2126(97)00260-8.
Shindyalov IN, Bourne PE. (1998). «Protein structure alignment by incremental combinatorial extension (CE) of the optimal path». Protein Eng 11: 739-47. PMID 9796821. doi:10.1093/protein/11.9.739.
Prinzie A., D. Van den Poel (2006). «Incorporating sequential information into traditional classification models by using an element/position-sensitive SAM». Decision Support Systems 42 (2): 508-526. doi:10.1016/j.dss.2005.02.004. See also Prinzie and Van den Poel's paper «Predicting home-appliance acquisition sequences: Márkov/Márkov for Discrimination and survival analysis for modeling sequential information in NPTB models». Decision Support Systems 44 (1): 28-45. 2007. doi:10.1016/j.dss.2007.02.008.
Thompson JD, Plewniak F, Poch O (1999). «BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs». Bioinformatics 15: 87-8. PMID 10068696. doi:10.1093/bioinformatics/15.1.87.
Thompson JD, Plewniak F, Poch O. (1999). «A comprehensive comparison of multiple sequence alignment programs». Nucleic Acids Res 27: 2682-90. PMID 10373585. doi:10.1093/nar/27.13.2682.

elsevier.com

linkinghub.elsevier.com

Higgins DG, Sharp PM (1988). «CLUSTAL: a package for performing multiple sequence alignment on a microcomputer». Gene 73 (1): 237-44. PMID 3243435. doi:10.1016/0378-1119(88)90330-7.
Notredame C, Higgins DG, Heringa J. (2000). «T-Coffee: A novel method for fast and accurate multiple sequence alignment». J Mol Biol 302 (1): 205-17. PMID 10964570. doi:10.1006/jmbi.2000.4042.

genome.org

Brudno M, Poliakov A, Salamov A, Cooper GM, Sidow A, Rubin EM, Solovyev V, Batzoglou S, Dubchak I (2004). «Automate whole-genome multiple alignment of rat, mouse, and human». Genome Research 14: 685-692. doi:10.1101/gr.2067704.

nih.gov

ncbi.nlm.nih.gov

Schneider TD, Stephens RM (1990). «Sequence logos: a new way to display consensus sequences». Nucleic Acids Res 18: 6097-6100. PMID 2172928. doi:10.1093/nar/18.20.6097.
Brudno M, Malde S, Poliakov A, Do CB, Couronne O, Dubchak I, Batzoglou S (2003). «Glocal alignment: finding rearrangements during alignment». Bioinformatics. 19 Suppl 1: i54-62. PMID 12855437. doi:10.1093/bioinformatics/btg1005.
Wang L, Jiang T. (1994). «On the complexity of multiple sequence alignment». J Comput Biol 1: 337-48. PMID 8790475.
Lipman DJ, Altschul SF, Kececioglu JD (1989). «A tool for multiple sequence alignment». Proc Natl Acad Sci U S A 86: 4412-5. PMID 2734293. doi:10.1073/pnas.86.12.4412.
Higgins DG, Sharp PM (1988). «CLUSTAL: a package for performing multiple sequence alignment on a microcomputer». Gene 73 (1): 237-44. PMID 3243435. doi:10.1016/0378-1119(88)90330-7.
Thompson JD, Higgins DG, Gibson TJ. (1994). «CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice». Nucleic Acids Res 22: 4673-80. PMID 7984417. doi:10.1093/nar/22.22.4673.
Chenna R, Sugawara H, Koike T, Lopez R, Gibson TJ, Higgins DG, Thompson JD. (2003). «Multiple sequence alignment with the Clustal series of programs». Nucleic Acids Res 31: 3497-500. PMID 12824352. doi:10.1093/nar/gkg500.
Notredame C, Higgins DG, Heringa J. (2000). «T-Coffee: A novel method for fast and accurate multiple sequence alignment». J Mol Biol 302 (1): 205-17. PMID 10964570. doi:10.1006/jmbi.2000.4042.
Hirosawa M, Totoki Y, Hoshida M, Ishikawa M. (1995). «Comprehensive study on iterative algorithms of multiple sequence alignment». Comput Appl Biosci 11: 13-8. PMID 7796270. doi:10.1093/bioinformatics/11.1.13.
Karplus K, Barrett C, Hughey R. (1998). «Hidden Márkov models for detecting remote protein homologies». Bioinformatics 14 (10): 846-856. PMID 9927713. doi:10.1093/bioinformatics/14.10.846.
Chothia C, Lesk AM. (1986). «The relation between the divergence of sequence and structure in proteins». EMBO J 5 (4): 823-6. PMID 3709526.
Zhang Y, Skolnick J. (2005). «The protein structure prediction problem could be solved using the current PDB library». Proc Natl Acad Sci U S A 102: 1029-34. PMID 15653774. doi:10.1073/pnas.0407152101.
Holm L, Sander C (1996). «Mapping the protein universe». Science 273: 595-603. PMID 8662544.
Taylor WR, Flores TP, Orengo CA. (1994). «Multiple protein structure alignment». Protein Sci 3: 1858-70. PMID 7849601.
Orengo CA, Michie AD, Jones S, Jones DT, Swindells MB, Thornton JM (1997). «CATH--a hierarchic classification of protein domain structures». Structure 5: 1093-108. PMID 9309224. doi:10.1016/S0969-2126(97)00260-8.
Shindyalov IN, Bourne PE. (1998). «Protein structure alignment by incremental combinatorial extension (CE) of the optimal path». Protein Eng 11: 739-47. PMID 9796821. doi:10.1093/protein/11.9.739.
Thompson JD, Plewniak F, Poch O (1999). «BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs». Bioinformatics 15: 87-8. PMID 10068696. doi:10.1093/bioinformatics/15.1.87.
Thompson JD, Plewniak F, Poch O. (1999). «A comprehensive comparison of multiple sequence alignment programs». Nucleic Acids Res 27: 2682-90. PMID 10373585. doi:10.1093/nar/27.13.2682.

pubmedcentral.nih.gov

Schneider TD, Stephens RM (1990). «Sequence logos: a new way to display consensus sequences». Nucleic Acids Res 18: 6097-6100. PMID 2172928. doi:10.1093/nar/18.20.6097.
Thompson JD, Higgins DG, Gibson TJ. (1994). «CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice». Nucleic Acids Res 22: 4673-80. PMID 7984417. doi:10.1093/nar/22.22.4673.
Chothia C, Lesk AM. (1986). «The relation between the divergence of sequence and structure in proteins». EMBO J 5 (4): 823-6. PMID 3709526.

oxfordjournals.org

bioinformatics.oxfordjournals.org

Brudno M, Malde S, Poliakov A, Do CB, Couronne O, Dubchak I, Batzoglou S (2003). «Glocal alignment: finding rearrangements during alignment». Bioinformatics. 19 Suppl 1: i54-62. PMID 12855437. doi:10.1093/bioinformatics/btg1005.
Hirosawa M, Totoki Y, Hoshida M, Ishikawa M. (1995). «Comprehensive study on iterative algorithms of multiple sequence alignment». Comput Appl Biosci 11: 13-8. PMID 7796270. doi:10.1093/bioinformatics/11.1.13.
Karplus K, Barrett C, Hughey R. (1998). «Hidden Márkov models for detecting remote protein homologies». Bioinformatics 14 (10): 846-856. PMID 9927713. doi:10.1093/bioinformatics/14.10.846.
Thompson JD, Plewniak F, Poch O (1999). «BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs». Bioinformatics 15: 87-8. PMID 10068696. doi:10.1093/bioinformatics/15.1.87.

nar.oxfordjournals.org

Chenna R, Sugawara H, Koike T, Lopez R, Gibson TJ, Higgins DG, Thompson JD. (2003). «Multiple sequence alignment with the Clustal series of programs». Nucleic Acids Res 31: 3497-500. PMID 12824352. doi:10.1093/nar/gkg500.
Thompson JD, Plewniak F, Poch O. (1999). «A comprehensive comparison of multiple sequence alignment programs». Nucleic Acids Res 27: 2682-90. PMID 10373585. doi:10.1093/nar/27.13.2682.

peds.oxfordjournals.org

Shindyalov IN, Bourne PE. (1998). «Protein structure alignment by incremental combinatorial extension (CE) of the optimal path». Protein Eng 11: 739-47. PMID 9796821. doi:10.1093/protein/11.9.739.

pnas.org

Lipman DJ, Altschul SF, Kececioglu JD (1989). «A tool for multiple sequence alignment». Proc Natl Acad Sci U S A 86: 4412-5. PMID 2734293. doi:10.1073/pnas.86.12.4412.
Zhang Y, Skolnick J. (2005). «The protein structure prediction problem could be solved using the current PDB library». Proc Natl Acad Sci U S A 102: 1029-34. PMID 15653774. doi:10.1073/pnas.0407152101.

repec.org

econpapers.repec.org

Prinzie A., D. Van den Poel (2006). «Incorporating sequential information into traditional classification models by using an element/position-sensitive SAM». Decision Support Systems 42 (2): 508-526. doi:10.1016/j.dss.2005.02.004. See also Prinzie and Van den Poel's paper «Predicting home-appliance acquisition sequences: Márkov/Márkov for Discrimination and survival analysis for modeling sequential information in NPTB models». Decision Support Systems 44 (1): 28-45. 2007. doi:10.1016/j.dss.2007.02.008.

sciencemag.org

Holm L, Sander C (1996). «Mapping the protein universe». Science 273: 595-603. PMID 8662544.

ualberta.ca

cs.ualberta.ca

Kondrak, Grzegorz (2002). Algorithms for Language Reconstruction (PDF). University of Toronto, Ontario. Archivado desde el original el 17 de diciembre de 2008. Consultado el 21 de enero de 2007.

web.archive.org

Taylor WR, Flores TP, Orengo CA. (1994). «Multiple protein structure alignment». Protein Sci 3: 1858-70. PMID 7849601.
Kondrak, Grzegorz (2002). Algorithms for Language Reconstruction (PDF). University of Toronto, Ontario. Archivado desde el original el 17 de diciembre de 2008. Consultado el 21 de enero de 2007.