References analysis of the Wikipedia article "CRISPR" in the Estonian version

doi.org (Global: 2^nd place; Estonian: 16^th place)

Barrangou R (2015). "The roles of CRISPR-Cas systems in adaptive immunity and beyond". Current Opinion in Immunology. 32: 36–41. PMID 25574773. doi:10.1016/j.coi.2014.12.008

Zhang F, Wen Y, Guo X (2014). "CRISPR/Cas9 for genome editing: progress, implications and challenges". Human Molecular Genetics. 23 (R1): R40–6. PMID 24651067. doi:10.1093/hmg/ddu125

Redman M, King A, Watson C, King D (August 2016). "What is CRISPR/Cas9?". Archives of Disease in Childhood. Education and Practice Edition. 101 (4): 213–5. PMC 4975809 . PMID 27059283. doi:10.1136/archdischild-2016-310459

Barrangou R, Fremaux C, Deveau H, Richards M, Boyaval P, Moineau S, Romero DA, Horvath P (March 2007). "CRISPR provides acquired resistance against viruses in prokaryotes". Science. 315 (5819): 1709–12. Bibcode:2007Sci...315.1709B. PMID 17379808. doi:10.1126/science.1138140

Marraffini LA, Sontheimer EJ (December 2008). "CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA". Science. 322 (5909): 1843–5. Bibcode:2008Sci...322.1843M. PMC 2695655 . PMID 19095942. doi:10.1126/science.1165771

Mohanraju P, Makarova KS, Zetsche B, Zhang F, Koonin EV, van der Oost J (2016). "Diverse evolutionary roots and mechanistic variations of the CRISPR-Cas systems". Science. 353 (6299): aad5147. PMID 27493190. doi:10.1126/science.aad5147

Grissa I, Vergnaud G, Pourcel C (May 2007). "The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats". BMC Bioinformatics. 8: 172. PMC 1892036 . PMID 17521438. doi:10.1186/1471-2105-8-172

Marraffini LA (October 2015). "CRISPR-Cas immunity in prokaryotes". Nature. 526(7571): 55–61. PMID 26432244. doi:10.1038/nature15386

Aliyari R, Ding SW (January 2009). "RNA-based viral immunity initiated by the Dicer family of host immune receptors". Immunological Reviews. 227 (1): 176–88. PMC 2676720 . PMID 19120484. doi:10.1111/j.1600-065X.2008.00722.x

Dugar G, Herbig A, Förstner KU, Heidrich N, Reinhardt R, Nieselt K, Sharma CM (May 2013). "High-resolution transcriptome maps reveal strain-specific regulatory features of multiple Campylobacter jejuni isolates". PLoS Genetics. 9 (5): e1003495. PMC 3656092 . PMID 23696746. doi:10.1371/journal.pgen.1003495

Hatoum-Aslan A, Maniv I, Marraffini LA (December 2011). "Mature clustered, regularly interspaced, short palindromic repeats RNA (crRNA) length is measured by a ruler mechanism anchored at the precursor processing site". Proceedings of the National Academy of Sciences of the United States of America. 108 (52): 21218–22. Bibcode:2011PNAS..10821218H. PMC 3248500 . PMID 22160698. doi:10.1073/pnas.1112832108

Yosef I, Goren MG, Qimron U (July 2012). "Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli". Nucleic Acids Research. 40 (12): 5569–76. PMC 3384332 . PMID 22402487. doi:10.1093/nar/gks216

Swarts DC, Mosterd C, van Passel MW, Brouns SJ (2012). "CRISPR interference directs strand specific spacer acquisition". PLoS One. 7 (4): e35888. Bibcode:2012PLoSO...735888S. PMC 3338789 . PMID 22558257. doi:10.1371/journal.pone.0035888

Babu M, Beloglazova N, Flick R, Graham C, Skarina T, Nocek B, Gagarinova A, Pogoutse O, Brown G, Binkowski A, Phanse S, Joachimiak A, Koonin EV, Savchenko A, Emili A, Greenblatt J, Edwards AM, Yakunin AF (January 2011). "A dual function of the CRISPR-Cas system in bacterial antivirus immunity and DNA repair". Molecular Microbiology. 79 (2): 484–502. PMC 3071548 . PMID 21219465. doi:10.1111/j.1365-2958.2010.07465.x

Han D, Lehmann K, Krauss G (June 2009). "SSO1450—a CAS1 protein from Sulfolobus solfataricus P2 with high affinity for RNA and DNA". FEBS Letters. 583 (12): 1928–32. PMID 19427858. doi:10.1016/j.febslet.2009.04.047

Wiedenheft B, Zhou K, Jinek M, Coyle SM, Ma W, Doudna JA (June 2009). "Structural basis for DNase activity of a conserved protein implicated in CRISPR-mediated genome defense". Structure. 17 (6): 904–12. PMID 19523907. doi:10.1016/j.str.2009.03.019

Wiedenheft B, Sternberg SH, Doudna JA (February 2012). "RNA-guided genetic silencing systems in bacteria and archaea". Nature. 482 (7385): 331–8. Bibcode:2012Natur.482..331W. PMID 22337052. doi:10.1038/nature10886

Beloglazova N, Brown G, Zimmerman MD, Proudfoot M, Makarova KS, Kudritska M, Kochinyan S, Wang S, Chruszcz M, Minor W, Koonin EV, Edwards AM, Savchenko A, Yakunin AF (July 2008). "A novel family of sequence-specific endoribonucleases associated with the clustered regularly interspaced short palindromic repeats". The Journal of Biological Chemistry. 283 (29): 20361–71. PMC 2459268 . PMID 18482976. doi:10.1074/jbc.M803225200

Nam KH, Ding F, Haitjema C, Huang Q, DeLisa MP, Ke A (October 2012). "Double-stranded endonuclease activity in Bacillus halodurans clustered regularly interspaced short palindromic repeats (CRISPR)-associated Cas2 protein". The Journal of Biological Chemistry. 287 (43): 35943–52. PMC 3476262 . PMID 22942283. doi:10.1074/jbc.M112.382598

Samai P, Smith P, Shuman S (December 2010). "Structure of a CRISPR-associated protein Cas2 from Desulfovibrio vulgaris". Acta Crystallographica Section F. 66 (Pt 12): 1552–6. PMC 2998353 . PMID 21139194. doi:10.1107/S1744309110039801

Nuñez JK, Kranzusch PJ, Noeske J, Wright AV, Davies CW, Doudna JA (June 2014). "Cas1-Cas2 complex formation mediates spacer acquisition during CRISPR-Cas adaptive immunity". Nature Structural & Molecular Biology. 21 (6): 528–34. PMC 4075942 . PMID 24793649. doi:10.1038/nsmb.2820

Nuñez JK, Lee AS, Engelman A, Doudna JA (March 2015). "Integrase-mediated spacer acquisition during CRISPR-Cas adaptive immunity". Nature. 519 (7542): 193–8. PMC 4359072 . PMID 25707795. doi:10.1038/nature14237

Wang J, Li J, Zhao H, Sheng G, Wang M, Yin M, Wang Y (November 2015). "Structural and Mechanistic Basis of PAM-Dependent Spacer Acquisition in CRISPR-Cas Systems". Cell. 163 (4): 840–53. PMID 26478180. doi:10.1016/j.cell.2015.10.008

Nuñez JK, Harrington LB, Kranzusch PJ, Engelman AN, Doudna JA (November 2015). "Foreign DNA capture during CRISPR-Cas adaptive immunity". Nature. 527 (7579): 535–8. PMC 4662619 . PMID 26503043. doi:10.1038/nature15760

Sorek, Rotem; Lawrence, C. Martin; Wiedenheft, Blake (2013). "CRISPR-Mediated Adaptive Immune Systems in Bacteria and Archaea". Annual Review of Biochemistry. 82(1): 237–266. doi:10.1146/annurev-biochem-072911-172315

Nuñez, James K.; Bai, Lawrence; Harrington, Lucas B.; Hinder, Tracey L.; Doudna, Jennifer A. (2016-06-16). "CRISPR Immunological Memory Requires a Host Factor for Specificity". Molecular Cell. 62 (6): 824–833. ISSN 1097–4164. PMID 27211867. doi:10.1016/j.molcel.2016.04.027

Bolotin A, Quinquis B, Sorokin A, Ehrlich SD (August 2005). "Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin". Microbiology. 151 (Pt 8): 2551–61. PMID 16079334. doi:10.1099/mic.0.28048-0

Horvath P, Romero DA, Coûté-Monvoisin AC, Richards M, Deveau H, Moineau S, Boyaval P, Fremaux C, Barrangou R (February 2008). "Diversity, activity, and evolution of CRISPR loci in Streptococcus thermophilus". Journal of Bacteriology. 190 (4): 1401–12. PMC 2238196 . PMID 18065539. doi:10.1128/JB.01415-07

Deveau H, Barrangou R, Garneau JE, Labonté J, Fremaux C, Boyaval P, Romero DA, Horvath P, Moineau S (February 2008). "Phage response to CRISPR-encoded resistance in Streptococcus thermophilus". Journal of Bacteriology. 190 (4): 1390–400. PMC 2238228 . PMID 18065545. doi:10.1128/JB.01412-07

Mojica FJ, Díez-Villaseñor C, García-Martínez J, Almendros C (March 2009). "Short motif sequences determine the targets of the prokaryotic CRISPR defence system". Microbiology. 155 (Pt 3): 733–40. PMID 19246744. doi:10.1099/mic.0.023960-0

Lillestøl RK, Shah SA, Brügger K, Redder P, Phan H, Christiansen J, Garrett RA (April 2009). "CRISPR families of the crenarchaeal genus Sulfolobus: bidirectional transcription and dynamic properties". Molecular Microbiology. 72 (1): 259–72. PMID 19239620. doi:10.1111/j.1365-2958.2009.06641.x

Shah SA, Hansen NR, Garrett RA (February 2009). "Distribution of CRISPR spacer matches in viruses and plasmids of crenarchaeal acidothermophiles and implications for their inhibitory mechanism". Biochemical Society Transactions. 37 (Pt 1): 23–8. PMID 19143596. doi:10.1042/BST0370023

Díez-Villaseñor C, Guzmán NM, Almendros C, García-Martínez J, Mojica FJ (May 2013). "CRISPR-spacer integration reporter plasmids reveal distinct genuine acquisition specificities among CRISPR-Cas I-E variants of Escherichia coli". RNA Biology. 10 (5): 792–802. PMC 3737337 . PMID 23445770. doi:10.4161/rna.24023

Erdmann S, Garrett RA (September 2012). "Selective and hyperactive uptake of foreign DNA by adaptive immune systems of an archaeon via two distinct mechanisms". Molecular Microbiology. 85 (6): 1044–56. PMC 3468723 . PMID 22834906. doi:10.1111/j.1365-2958.2012.08171.x

Shah SA, Erdmann S, Mojica FJ, Garrett RA (May 2013). "Protospacer recognition motifs: mixed identities and functional diversity". RNA Biology. 10 (5): 891–9. PMC 3737346 . PMID 23403393. doi:10.4161/rna.23764

Goren MG, Yosef I, Auster O, Qimron U (October 2012). "Experimental definition of a clustered regularly interspaced short palindromic duplicon in Escherichia coli". Journal of Molecular Biology. 423 (1): 14–6. PMID 22771574. doi:10.1016/j.jmb.2012.06.037

Datsenko KA, Pougach K, Tikhonov A, Wanner BL, Severinov K, Semenova E (July 2012). "Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity system". Nature Communications. 3: 945. Bibcode:2012NatCo...3E.945D. PMID 22781758. doi:10.1038/ncomms1937

Marraffini LA, Sontheimer EJ (March 2010). "CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea". Nature Reviews Genetics. 11 (3): 181–90. PMC 2928866 . PMID 20125085. doi:10.1038/nrg2749

Kunin V, Sorek R, Hugenholtz P (2007). "Evolutionary conservation of sequence and secondary structures in CRISPR repeats". Genome Biology. 8 (4): R61. PMC 1896005 . PMID 17442114. doi:10.1186/gb-2007-8-4-r61

Carte J, Wang R, Li H, Terns RM, Terns MP (December 2008). "Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes". Genes & Development. 22 (24): 3489–96. PMC 2607076 . PMID 19141480. doi:10.1101/gad.1742908

Wang R, Preamplume G, Terns MP, Terns RM, Li H (February 2011). "Interaction of the Cas6 riboendonuclease with CRISPR RNAs: recognition and cleavage". Structure. 19 (2): 257–64. PMC 3154685 . PMID 21300293. doi:10.1016/j.str.2010.11.014

Niewoehner O, Jinek M, Doudna JA (January 2014). "Evolution of CRISPR RNA recognition and processing by Cas6 endonucleases". Nucleic Acids Research. 42 (2): 1341–53. PMC 3902920 . PMID 24150936. doi:10.1093/nar/gkt922

Gasiunas G, Barrangou R, Horvath P, Siksnys V (September 2012). "Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria". Proceedings of the National Academy of Sciences of the United States of America. 109 (39): E2579–86. Bibcode:2012PNAS..109E2579G. PMC 3465414 . PMID 22949671. doi:10.1073/pnas.1208507109

Manica A, Zebec Z, Teichmann D, Schleper C (April 2011). "In vivo activity of CRISPR-mediated virus defence in a hyperthermophilic archaeon". Molecular Microbiology. 80 (2): 481–91. PMID 21385233. doi:10.1111/j.1365-2958.2011.07586.x

ore MM, Lundgren M, van Duijn E, Bultema JB, Westra ER, Waghmare SP, Wiedenheft B, Pul U, Wurm R, Wagner R, Beijer MR, Barendregt A, Zhou K, Snijders AP, Dickman MJ, Doudna JA, Boekema EJ, Heck AJ, van der Oost J, Brouns SJ (May 2011). "Structural basis for CRISPR RNA-guided DNA recognition by Cascade". Nature Structural & Molecular Biology. 18 (5): 529–36. PMID 21460843. doi:10.1038/nsmb.2019

Wiedenheft B, Lander GC, Zhou K, Jore MM, Brouns SJ, van der Oost J, Doudna JA, Nogales E (September 2011). "Structures of the RNA-guided surveillance complex from a bacterial immune system". Nature. 477 (7365): 486–9. Bibcode:2011Natur.477..486W. PMC 4165517 . PMID 21938068. doi:10.1038/nature10402

Zhang J, Rouillon C, Kerou M, Reeks J, Brugger K, Graham S, Reimann J, Cannone G, Liu H, Albers SV, Naismith JH, Spagnolo L, White MF (February 2012). "Structure and mechanism of the CMR complex for CRISPR-mediated antiviral immunity". Molecular Cell. 45 (3): 303–13. PMC 3381847 . PMID 22227115. doi:10.1016/j.molcel.2011.12.013

Hale CR, Zhao P, Olson S, Duff MO, Graveley BR, Wells L, Terns RM, Terns MP (November 2009). "RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex". Cell. 139 (5): 945–56. PMC 2951265 . PMID 19945378. doi:10.1016/j.cell.2009.07.040

Deng L, Garrett RA, Shah SA, Peng X, She Q (March 2013). "A novel interference mechanism by a type IIIB CRISPR-Cmr module in Sulfolobus". Molecular Microbiology. 87(5): 1088–99. PMID 23320564. doi:10.1111/mmi.12152

Marraffini LA, Sontheimer EJ (January 2010). "Self versus non-self discrimination during CRISPR RNA-directed immunity". Nature. 463 (7280): 568–71. Bibcode:2010Natur.463..568M. PMC 2813891 . PMID 20072129. doi:10.1038/nature08703

harvard.edu (Global: 18^th place; Estonian: 77^th place)

ui.adsabs.harvard.edu

nih.gov (Global: 4^th place; Estonian: 14^th place)

ncbi.nlm.nih.gov

Barrangou R (2015). "The roles of CRISPR-Cas systems in adaptive immunity and beyond". Current Opinion in Immunology. 32: 36–41. PMID 25574773. doi:10.1016/j.coi.2014.12.008

Zhang F, Wen Y, Guo X (2014). "CRISPR/Cas9 for genome editing: progress, implications and challenges". Human Molecular Genetics. 23 (R1): R40–6. PMID 24651067. doi:10.1093/hmg/ddu125

Marraffini LA (October 2015). "CRISPR-Cas immunity in prokaryotes". Nature. 526(7571): 55–61. PMID 26432244. doi:10.1038/nature15386

CRISPR (Estonian Wikipedia)

doi.org (Global: 2^nd place; Estonian: 16^th place)

harvard.edu (Global: 18^th place; Estonian: 77^th place)

ui.adsabs.harvard.edu

nih.gov (Global: 4^th place; Estonian: 14^th place)

ncbi.nlm.nih.gov

worldcat.org (Global: 5^th place; Estonian: 76^th place)

CRISPR (Estonian Wikipedia)

doi.org (Global: 2nd place; Estonian: 16th place)

harvard.edu (Global: 18th place; Estonian: 77th place)

ui.adsabs.harvard.edu

nih.gov (Global: 4th place; Estonian: 14th place)

ncbi.nlm.nih.gov

worldcat.org (Global: 5th place; Estonian: 76th place)

doi.org (Global: 2^nd place; Estonian: 16^th place)

harvard.edu (Global: 18^th place; Estonian: 77^th place)

nih.gov (Global: 4^th place; Estonian: 14^th place)

worldcat.org (Global: 5^th place; Estonian: 76^th place)