نرم‌افزارهای هم‌ترازسازی توالی (Persian Wikipedia)

Analysis of information sources in references of the Wikipedia article "نرم‌افزارهای هم‌ترازسازی توالی" in Persian language version.

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15nih.gov

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10doi.org

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3worldcat.org

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2archive.org

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1handle.net

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1psu.edu

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archive.org

Durbin, Richard; Eddy, Sean R.; Krogh, Anders; Mitchison, Graeme, eds. (1998). Biological sequence analysis: probabilistic models of proteins and nucleic acids. Cambridge, UK: Cambridge University Press. ISBN 978-0-521-62971-3.^{^{[کدام صفحه؟]}}
Ma, B.; Tromp, J.; Li, M. (2002). "PatternHunter: faster and more sensitive homology search". Bioinformatics. 18 (3): 440–445. doi:10.1093/bioinformatics/18.3.440. PMID 11934743.

doi.org

Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ; Gish; Miller; Myers; Lipman (October 1990). "Basic local alignment search tool". Journal of Molecular Biology. 215 (3): 403–10. doi:10.1016/S0022-2836(05)80360-2. PMID 2231712.{{cite journal}}: نگهداری یادکرد:نام‌های متعدد:فهرست نویسندگان (link)
Söding J (April 2005). "Protein homology detection by HMM-HMM comparison". Bioinformatics. 21 (7): 951–60. doi:10.1093/bioinformatics/bti125. PMID 15531603.
Remmert, Michael; Biegert, Andreas; Hauser, Andreas; Söding, Johannes (2011-12-25). "HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment". Nature Methods. 9 (2): 173–175. doi:10.1038/nmeth.1818. hdl:11858/00-001M-0000-0015-8D56-A. ISSN 1548-7105. PMID 22198341.
Altschul SF; Madden TL; Schäffer AA; et al. (September 1997). "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs". Nucleic Acids Research. 25 (17): 3389–402. doi:10.1093/nar/25.17.3389. PMC 146917. PMID 9254694. {{cite journal}}: Unknown parameter |name-list-format= ignored (|name-list-style= suggested) (help)
Ma, B.; Tromp, J.; Li, M. (2002). "PatternHunter: faster and more sensitive homology search". Bioinformatics. 18 (3): 440–445. doi:10.1093/bioinformatics/18.3.440. PMID 11934743.
Li, M.; Ma, B.; Kisman, D.; Tromp, J. (2004). "Patternhunter II: highly sensitive and fast homology search". Journal of Bioinformatics and Computational Biology. 2 (3): 417–439. CiteSeerX 10.1.1.1.2393. doi:10.1142/S0219720004000661. PMID 15359419.
Noe L, Kucherov G; Kucherov (2005). "YASS: enhancing the sensitivity of DNA similarity search". Nucleic Acids Research. 33 (suppl_2): W540–W543. doi:10.1093/nar/gki478. PMC 1160238. PMID 15980530.
Homer, Nils; Merriman, Barry; Nelson, Stanley F. (2009). "BFAST: An Alignment Tool for Large Scale Genome Resequencing". PLOS ONE. 4 (11): e7767. doi:10.1371/journal.pone.0007767. PMC 2770639. PMID 19907642.
Kent, W. J. (2002). "BLAT---The BLAST-Like Alignment Tool". Genome Research. 12 (4): 656–664. doi:10.1101/gr.229202. ISSN 1088-9051. PMC 187518. PMID 11932250.
Langmead, Ben; Trapnell, Cole; Pop, Mihai; Salzberg, Steven L (2009). "Ultrafast and memory-efficient alignment of short DNA sequences to the human genome". Genome Biology. 10 (3): R25. doi:10.1186/gb-2009-10-3-r25. ISSN 1465-6906. PMC 2690996. PMID 19261174.

handle.net

hdl.handle.net

Remmert, Michael; Biegert, Andreas; Hauser, Andreas; Söding, Johannes (2011-12-25). "HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment". Nature Methods. 9 (2): 173–175. doi:10.1038/nmeth.1818. hdl:11858/00-001M-0000-0015-8D56-A. ISSN 1548-7105. PMID 22198341.

nih.gov

pubmed.ncbi.nlm.nih.gov

Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ; Gish; Miller; Myers; Lipman (October 1990). "Basic local alignment search tool". Journal of Molecular Biology. 215 (3): 403–10. doi:10.1016/S0022-2836(05)80360-2. PMID 2231712.{{cite journal}}: نگهداری یادکرد:نام‌های متعدد:فهرست نویسندگان (link)
Söding J (April 2005). "Protein homology detection by HMM-HMM comparison". Bioinformatics. 21 (7): 951–60. doi:10.1093/bioinformatics/bti125. PMID 15531603.
Remmert, Michael; Biegert, Andreas; Hauser, Andreas; Söding, Johannes (2011-12-25). "HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment". Nature Methods. 9 (2): 173–175. doi:10.1038/nmeth.1818. hdl:11858/00-001M-0000-0015-8D56-A. ISSN 1548-7105. PMID 22198341.
Altschul SF; Madden TL; Schäffer AA; et al. (September 1997). "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs". Nucleic Acids Research. 25 (17): 3389–402. doi:10.1093/nar/25.17.3389. PMC 146917. PMID 9254694. {{cite journal}}: Unknown parameter |name-list-format= ignored (|name-list-style= suggested) (help)
Ma, B.; Tromp, J.; Li, M. (2002). "PatternHunter: faster and more sensitive homology search". Bioinformatics. 18 (3): 440–445. doi:10.1093/bioinformatics/18.3.440. PMID 11934743.
Li, M.; Ma, B.; Kisman, D.; Tromp, J. (2004). "Patternhunter II: highly sensitive and fast homology search". Journal of Bioinformatics and Computational Biology. 2 (3): 417–439. CiteSeerX 10.1.1.1.2393. doi:10.1142/S0219720004000661. PMID 15359419.
Noe L, Kucherov G; Kucherov (2005). "YASS: enhancing the sensitivity of DNA similarity search". Nucleic Acids Research. 33 (suppl_2): W540–W543. doi:10.1093/nar/gki478. PMC 1160238. PMID 15980530.
Homer, Nils; Merriman, Barry; Nelson, Stanley F. (2009). "BFAST: An Alignment Tool for Large Scale Genome Resequencing". PLOS ONE. 4 (11): e7767. doi:10.1371/journal.pone.0007767. PMC 2770639. PMID 19907642.
Kent, W. J. (2002). "BLAT---The BLAST-Like Alignment Tool". Genome Research. 12 (4): 656–664. doi:10.1101/gr.229202. ISSN 1088-9051. PMC 187518. PMID 11932250.
Langmead, Ben; Trapnell, Cole; Pop, Mihai; Salzberg, Steven L (2009). "Ultrafast and memory-efficient alignment of short DNA sequences to the human genome". Genome Biology. 10 (3): R25. doi:10.1186/gb-2009-10-3-r25. ISSN 1465-6906. PMC 2690996. PMID 19261174.

ncbi.nlm.nih.gov

Altschul SF; Madden TL; Schäffer AA; et al. (September 1997). "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs". Nucleic Acids Research. 25 (17): 3389–402. doi:10.1093/nar/25.17.3389. PMC 146917. PMID 9254694. {{cite journal}}: Unknown parameter |name-list-format= ignored (|name-list-style= suggested) (help)
Noe L, Kucherov G; Kucherov (2005). "YASS: enhancing the sensitivity of DNA similarity search". Nucleic Acids Research. 33 (suppl_2): W540–W543. doi:10.1093/nar/gki478. PMC 1160238. PMID 15980530.
Homer, Nils; Merriman, Barry; Nelson, Stanley F. (2009). "BFAST: An Alignment Tool for Large Scale Genome Resequencing". PLOS ONE. 4 (11): e7767. doi:10.1371/journal.pone.0007767. PMC 2770639. PMID 19907642.
Kent, W. J. (2002). "BLAT---The BLAST-Like Alignment Tool". Genome Research. 12 (4): 656–664. doi:10.1101/gr.229202. ISSN 1088-9051. PMC 187518. PMID 11932250.
Langmead, Ben; Trapnell, Cole; Pop, Mihai; Salzberg, Steven L (2009). "Ultrafast and memory-efficient alignment of short DNA sequences to the human genome". Genome Biology. 10 (3): R25. doi:10.1186/gb-2009-10-3-r25. ISSN 1465-6906. PMC 2690996. PMID 19261174.

psu.edu

citeseerx.ist.psu.edu

Li, M.; Ma, B.; Kisman, D.; Tromp, J. (2004). "Patternhunter II: highly sensitive and fast homology search". Journal of Bioinformatics and Computational Biology. 2 (3): 417–439. CiteSeerX 10.1.1.1.2393. doi:10.1142/S0219720004000661. PMID 15359419.

worldcat.org

Remmert, Michael; Biegert, Andreas; Hauser, Andreas; Söding, Johannes (2011-12-25). "HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment". Nature Methods. 9 (2): 173–175. doi:10.1038/nmeth.1818. hdl:11858/00-001M-0000-0015-8D56-A. ISSN 1548-7105. PMID 22198341.
Kent, W. J. (2002). "BLAT---The BLAST-Like Alignment Tool". Genome Research. 12 (4): 656–664. doi:10.1101/gr.229202. ISSN 1088-9051. PMC 187518. PMID 11932250.
Langmead, Ben; Trapnell, Cole; Pop, Mihai; Salzberg, Steven L (2009). "Ultrafast and memory-efficient alignment of short DNA sequences to the human genome". Genome Biology. 10 (3): R25. doi:10.1186/gb-2009-10-3-r25. ISSN 1465-6906. PMC 2690996. PMID 19261174.