هم‌ترازسازی چندتوالی (Persian Wikipedia)

Analysis of information sources in references of the Wikipedia article "هم‌ترازسازی چندتوالی" in Persian language version.

refsWebsite

Global rank Persian rank

26nih.gov

4^th place

5^th place

17doi.org

2^nd place

3web.archive.org

1^st place

3archive.org

6^th place

9^th place

2embl.de

low place

1ebi.ac.uk

5,849^th place

1,422^nd place

1liebertonline.com

low place

archive.org

Higgins DG, Sharp PM (1988). "CLUSTAL: a package for performing multiple sequence alignment on a microcomputer". Gene. 73 (1): 237–244. doi:10.1016/0378-1119(88)90330-7. PMID 3243435.
Grasso C, Lee C (2004). "Combining partial order alignment and progressive multiple sequence alignment increases alignment speed and scalability to very large alignment problems". Bioinformatics. 20 (10): 1546–56. doi:10.1093/bioinformatics/bth126. PMID 14962922.
Bailey TL, Gribskov M (1998). "Combining evidence using p-values: application to sequence homology searches". Bioinformatics. 14 (1): 48–54. doi:10.1093/bioinformatics/14.1.48. PMID 9520501.

doi.org

Wang L, Jiang T (1994). "On the complexity of multiple sequence alignment". J Comput Biol. 1 (4): 337–348. doi:10.1089/cmb.1994.1.337. PMID 8790475.
Just W (2001). "Computational complexity of multiple sequence alignment with SP-score". J Comput Biol. 8 (6): 615–23. doi:10.1089/106652701753307511. PMID 11747615.
Elias, Isaac (2006). "Settling the intractability of multiple alignment". J Comput Biol. 13 (7): 1323–1339. doi:10.1089/cmb.2006.13.1323. PMID 17037961.
Lipman DJ, Altschul SF, Kececioglu JD (1989). "A tool for multiple sequence alignment". Proc Natl Acad Sci U S A. 86 (12): 4412–4415. doi:10.1073/pnas.86.12.4412. PMC 287279. PMID 2734293.{{cite journal}}: نگهداری یادکرد:نام‌های متعدد:فهرست نویسندگان (link)
Higgins DG, Sharp PM (1988). "CLUSTAL: a package for performing multiple sequence alignment on a microcomputer". Gene. 73 (1): 237–244. doi:10.1016/0378-1119(88)90330-7. PMID 3243435.
Thompson JD, Higgins DG, Gibson TJ (1994). "CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice". Nucleic Acids Res. 22 (22): 4673–4680. doi:10.1093/nar/22.22.4673. PMC 308517. PMID 7984417.{{cite journal}}: نگهداری یادکرد:نام‌های متعدد:فهرست نویسندگان (link)
Notredame C, Higgins DG, Heringa J (2000). "T-Coffee: A novel method for fast and accurate multiple sequence alignment". J Mol Biol. 302 (1): 205–217. doi:10.1006/jmbi.2000.4042. PMID 10964570.{{cite journal}}: نگهداری یادکرد:نام‌های متعدد:فهرست نویسندگان (link)
Sze SH, Lu Y, Yang Q (2006). "A polynomial time solvable formulation of multiple sequence alignment". J Comput Biol. 13 (2): 309–319. doi:10.1089/cmb.2006.13.309. PMID 16597242.{{cite journal}}: نگهداری یادکرد:نام‌های متعدد:فهرست نویسندگان (link)
Hirosawa M, Totoki Y, Hoshida M, Ishikawa M (1995). "Comprehensive study on iterative algorithms of multiple sequence alignment". Comput Appl Biosci. 11 (1): 13–18. doi:10.1093/bioinformatics/11.1.13. PMID 7796270.{{cite journal}}: نگهداری یادکرد:نام‌های متعدد:فهرست نویسندگان (link)
Gotoh O (1996). "Significant improvement in accuracy of multiple protein sequence alignments by iterative refinement as assessed by reference to structural alignments". J Mol Biol. 264 (4): 823–38. doi:10.1006/jmbi.1996.0679. PMID 8980688.
Edgar RC (2004). "MUSCLE: multiple sequence alignment with high accuracy and high throughput". Nucleic Acids Research. 32 (5): 1792–97. doi:10.1093/nar/gkh340. PMC 390337. PMID 15034147.
Grasso C, Lee C (2004). "Combining partial order alignment and progressive multiple sequence alignment increases alignment speed and scalability to very large alignment problems". Bioinformatics. 20 (10): 1546–56. doi:10.1093/bioinformatics/bth126. PMID 14962922.
Battey JN, Kopp J, Bordoli L, Read RJ, Clarke ND, Schwede T (2007). "Automated server predictions in CASP7". Proteins. 69 (Suppl 8): 68–82. doi:10.1002/prot.21761. PMID 17894354.{{cite journal}}: نگهداری یادکرد:نام‌های متعدد:فهرست نویسندگان (link)
Notredame C, Higgins DG (1996). "SAGA: sequence alignment by genetic algorithm". Nucleic Acids Res. 24 (8): 1515–24. doi:10.1093/nar/24.8.1515. PMC 145823. PMID 8628686.
Notredame C, O'Brien EA, Higgins DG (1997). "RAGA: RNA sequence alignment by genetic algorithm". Nucleic Acids Res. 25 (22): 4570–80. doi:10.1093/nar/25.22.4570. PMC 147093. PMID 9358168.{{cite journal}}: نگهداری یادکرد:نام‌های متعدد:فهرست نویسندگان (link)
Henikoff S, Henikoff JG (1991). "Automated assembly of protein blocks for database searching". Nucleic Acids Res. 19 (23): 6565–6572. doi:10.1093/nar/19.23.6565. PMC 329220. PMID 1754394.
Bailey TL, Gribskov M (1998). "Combining evidence using p-values: application to sequence homology searches". Bioinformatics. 14 (1): 48–54. doi:10.1093/bioinformatics/14.1.48. PMID 9520501.

ebi.ac.uk

"Help with matrices used in sequence comparison tools". European Bioinformatics Institute. Archived from the original on 11 March 2010. Retrieved March 3, 2010.

embl.de

"Manual editing and adjustment of MSAs". European Molecular Biology Laboratory. 2007. Archived from the original on 24 September 2015. Retrieved March 7, 2010.
Budd, Aidan (10 February 2009). "Multiple sequence alignment exercises and demonstrations". European Molecular Biology Laboratory. Archived from the original on 5 March 2012. Retrieved June 30, 2010.

liebertonline.com

Elias, Isaac (2006). "Settling the intractability of multiple alignment". J Comput Biol. 13 (7): 1323–1339. doi:10.1089/cmb.2006.13.1323. PMID 17037961.

nih.gov

pubmed.ncbi.nlm.nih.gov

Wang L, Jiang T (1994). "On the complexity of multiple sequence alignment". J Comput Biol. 1 (4): 337–348. doi:10.1089/cmb.1994.1.337. PMID 8790475.
Just W (2001). "Computational complexity of multiple sequence alignment with SP-score". J Comput Biol. 8 (6): 615–23. doi:10.1089/106652701753307511. PMID 11747615.
Elias, Isaac (2006). "Settling the intractability of multiple alignment". J Comput Biol. 13 (7): 1323–1339. doi:10.1089/cmb.2006.13.1323. PMID 17037961.
Lipman DJ, Altschul SF, Kececioglu JD (1989). "A tool for multiple sequence alignment". Proc Natl Acad Sci U S A. 86 (12): 4412–4415. doi:10.1073/pnas.86.12.4412. PMC 287279. PMID 2734293.{{cite journal}}: نگهداری یادکرد:نام‌های متعدد:فهرست نویسندگان (link)
Higgins DG, Sharp PM (1988). "CLUSTAL: a package for performing multiple sequence alignment on a microcomputer". Gene. 73 (1): 237–244. doi:10.1016/0378-1119(88)90330-7. PMID 3243435.
Thompson JD, Higgins DG, Gibson TJ (1994). "CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice". Nucleic Acids Res. 22 (22): 4673–4680. doi:10.1093/nar/22.22.4673. PMC 308517. PMID 7984417.{{cite journal}}: نگهداری یادکرد:نام‌های متعدد:فهرست نویسندگان (link)
Notredame C, Higgins DG, Heringa J (2000). "T-Coffee: A novel method for fast and accurate multiple sequence alignment". J Mol Biol. 302 (1): 205–217. doi:10.1006/jmbi.2000.4042. PMID 10964570.{{cite journal}}: نگهداری یادکرد:نام‌های متعدد:فهرست نویسندگان (link)
Sze SH, Lu Y, Yang Q (2006). "A polynomial time solvable formulation of multiple sequence alignment". J Comput Biol. 13 (2): 309–319. doi:10.1089/cmb.2006.13.309. PMID 16597242.{{cite journal}}: نگهداری یادکرد:نام‌های متعدد:فهرست نویسندگان (link)
Hirosawa M, Totoki Y, Hoshida M, Ishikawa M (1995). "Comprehensive study on iterative algorithms of multiple sequence alignment". Comput Appl Biosci. 11 (1): 13–18. doi:10.1093/bioinformatics/11.1.13. PMID 7796270.{{cite journal}}: نگهداری یادکرد:نام‌های متعدد:فهرست نویسندگان (link)
Gotoh O (1996). "Significant improvement in accuracy of multiple protein sequence alignments by iterative refinement as assessed by reference to structural alignments". J Mol Biol. 264 (4): 823–38. doi:10.1006/jmbi.1996.0679. PMID 8980688.
Edgar RC (2004). "MUSCLE: multiple sequence alignment with high accuracy and high throughput". Nucleic Acids Research. 32 (5): 1792–97. doi:10.1093/nar/gkh340. PMC 390337. PMID 15034147.
Hughey R, Krogh A (1996). "Hidden Markov models for sequence analysis: extension and analysis of the basic method". CABIOS. 12 (2): 95–107. PMID 8744772.
Grasso C, Lee C (2004). "Combining partial order alignment and progressive multiple sequence alignment increases alignment speed and scalability to very large alignment problems". Bioinformatics. 20 (10): 1546–56. doi:10.1093/bioinformatics/bth126. PMID 14962922.
Battey JN, Kopp J, Bordoli L, Read RJ, Clarke ND, Schwede T (2007). "Automated server predictions in CASP7". Proteins. 69 (Suppl 8): 68–82. doi:10.1002/prot.21761. PMID 17894354.{{cite journal}}: نگهداری یادکرد:نام‌های متعدد:فهرست نویسندگان (link)
Notredame C, Higgins DG (1996). "SAGA: sequence alignment by genetic algorithm". Nucleic Acids Res. 24 (8): 1515–24. doi:10.1093/nar/24.8.1515. PMC 145823. PMID 8628686.
Notredame C, O'Brien EA, Higgins DG (1997). "RAGA: RNA sequence alignment by genetic algorithm". Nucleic Acids Res. 25 (22): 4570–80. doi:10.1093/nar/25.22.4570. PMC 147093. PMID 9358168.{{cite journal}}: نگهداری یادکرد:نام‌های متعدد:فهرست نویسندگان (link)
Kim J, Pramanik S, Chung MJ (1994). "Multiple sequence alignment using simulated annealing". Comput Appl Biosci. 10 (4): 419–26. PMID 7804875.{{cite journal}}: نگهداری یادکرد:نام‌های متعدد:فهرست نویسندگان (link)
Henikoff S, Henikoff JG (1991). "Automated assembly of protein blocks for database searching". Nucleic Acids Res. 19 (23): 6565–6572. doi:10.1093/nar/19.23.6565. PMC 329220. PMID 1754394.
Bailey TL, Gribskov M (1998). "Combining evidence using p-values: application to sequence homology searches". Bioinformatics. 14 (1): 48–54. doi:10.1093/bioinformatics/14.1.48. PMID 9520501.

ncbi.nlm.nih.gov

Lipman DJ, Altschul SF, Kececioglu JD (1989). "A tool for multiple sequence alignment". Proc Natl Acad Sci U S A. 86 (12): 4412–4415. doi:10.1073/pnas.86.12.4412. PMC 287279. PMID 2734293.{{cite journal}}: نگهداری یادکرد:نام‌های متعدد:فهرست نویسندگان (link)
"Genetic analysis software". National Center for Biotechnology Information. Retrieved March 3, 2010.
Thompson JD, Higgins DG, Gibson TJ (1994). "CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice". Nucleic Acids Res. 22 (22): 4673–4680. doi:10.1093/nar/22.22.4673. PMC 308517. PMID 7984417.{{cite journal}}: نگهداری یادکرد:نام‌های متعدد:فهرست نویسندگان (link)
Edgar RC (2004). "MUSCLE: multiple sequence alignment with high accuracy and high throughput". Nucleic Acids Research. 32 (5): 1792–97. doi:10.1093/nar/gkh340. PMC 390337. PMID 15034147.
Notredame C, Higgins DG (1996). "SAGA: sequence alignment by genetic algorithm". Nucleic Acids Res. 24 (8): 1515–24. doi:10.1093/nar/24.8.1515. PMC 145823. PMID 8628686.
Notredame C, O'Brien EA, Higgins DG (1997). "RAGA: RNA sequence alignment by genetic algorithm". Nucleic Acids Res. 25 (22): 4570–80. doi:10.1093/nar/25.22.4570. PMC 147093. PMID 9358168.{{cite journal}}: نگهداری یادکرد:نام‌های متعدد:فهرست نویسندگان (link)
Henikoff S, Henikoff JG (1991). "Automated assembly of protein blocks for database searching". Nucleic Acids Res. 19 (23): 6565–6572. doi:10.1093/nar/19.23.6565. PMC 329220. PMID 1754394.

web.archive.org

"Help with matrices used in sequence comparison tools". European Bioinformatics Institute. Archived from the original on 11 March 2010. Retrieved March 3, 2010.
"Manual editing and adjustment of MSAs". European Molecular Biology Laboratory. 2007. Archived from the original on 24 September 2015. Retrieved March 7, 2010.
Budd, Aidan (10 February 2009). "Multiple sequence alignment exercises and demonstrations". European Molecular Biology Laboratory. Archived from the original on 5 March 2012. Retrieved June 30, 2010.