Prédiction de la structure des protéines (French Wikipedia)

Analysis of information sources in references of the Wikipedia article "Prédiction de la structure des protéines" in French language version.

refsWebsite

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17doi.org

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16nih.gov

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8harvard.edu

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118^th place

1issn.org

57^th place

4^th place

1sciencedirect.com

149^th place

80^th place

1semanticscholar.org

11^th place

325^th place

1arxiv.org

69^th place

232^nd place

arxiv.org

(en) Morcos F, Pagnani A, Lunt B, Bertolino A, Marks DS, Sander C, Zecchina R, Onuchic JN, Hwa T, Weigt M, « Direct-coupling analysis of residue coevolution captures native contacts across many protein families », Proceedings of the National Academy of Sciences of the United States of America, vol. 108, n^o 49,‎ décembre 2011, E1293-301 (PMID 22106262, PMCID 3241805, DOI 10.1073/pnas.1111471108 , Bibcode 2011PNAS..108E1293M, arXiv 1110.5223)

doi.org

dx.doi.org

(en) JY. Huang et DL. Brutlag, « The emotif database », Nucleic Acids Res, vol. 29, n^o 1,‎ janvier 2001, p. 202-04 (PMID 11125091, DOI 10.1093 / nar / 29.1.202).
(en) W. Pirovano et J. Heringa, Data Mining Techniques for the Life Sciences, vol. 609, coll. « Methods in Molecular Biology », 2010, 327-48 p. (PMID 20221928, DOI 10.1007 / 978-1-60327-241-4_19), « Protein secondary structure prediction ».
(en) Márcio Dorn, Mariel Barbachan e Silva, Luciana S. Buriol et Luis C. Lamb, « Three-dimensional protein structure prediction: Methods and computational strategies », Computational Biology and Chemistry, vol. 53,‎ 1^er décembre 2014, p. 251–276 (ISSN 1476-9271, PMID 25462334, DOI 10.1016/j.compbiolchem.2014.10.001, lire en ligne)
(en) Zhang Y., « Progress and challenges in protein structure prediction », Current Opinion in Structural Biology, vol. 18, n^o 3,‎ 2008, p. 342–8 (PMID 18436442, PMCID 2680823, DOI 10.1016/j.sbi.2008.02.004).
(en) Shaw DE, Dror RO, Salmon JK, Grossman JP, Mackenzie KM, Bank JA, Young C, Deneroff MM, Batson B, Bowers KJ, Chow E, Millisecond-scale molecular dynamics simulations on Anton, 2009, 1 p. (ISBN 9781605587448, DOI 10.1145/1654059.1654126)
(en) Pierce LC, Salomon-Ferrer R, de Oliveira CA, McCammon JA, Walker RC, « Routine Access to Millisecond Time Scale Events with Accelerated Molecular Dynamics », Journal of Chemical Theory and Computation, vol. 8, n^o 9,‎ septembre 2012, p. 2997–3002 (PMID 22984356, PMCID 3438784, DOI 10.1021/ct300284c)
(en) Kmiecik S, Gront D, Kolinski M, Wieteska L, Dawid AE, Kolinski A, « Coarse-Grained Protein Models and Their Applications », Chemical Reviews, vol. 116, n^o 14,‎ juillet 2016, p. 7898–936 (PMID 27333362, DOI 10.1021/acs.chemrev.6b00163)
(en) Cheung NJ, Yu W, « De novo protein structure prediction using ultra-fast molecular dynamics simulation », PLOS ONE, vol. 13, n^o 11,‎ novembre 2018, e0205819 (PMID 30458007, PMCID 6245515, DOI 10.1371/journal.pone.0205819, Bibcode 2018PLoSO..1305819C)
(en) Göbel U, Sander C, Schneider R, Valencia A, « Correlated mutations and residue contacts in proteins », Proteins, vol. 18, n^o 4,‎ avril 1994, p. 309–17 (PMID 8208723, DOI 10.1002/prot.340180402, S2CID 14978727)
(en) Taylor WR, Hatrick K, « Compensating changes in protein multiple sequence alignments », Protein Engineering, vol. 7, n^o 3,‎ mars 1994, p. 341–8 (PMID 8177883, DOI 10.1093/protein/7.3.341)
(en) Neher E, « How frequent are correlated changes in families of protein sequences? », Proceedings of the National Academy of Sciences of the United States of America, vol. 91, n^o 1,‎ janvier 1994, p. 98–102 (PMID 8278414, PMCID 42893, DOI 10.1073/pnas.91.1.98, Bibcode 1994PNAS...91...98N)
(en) Marks DS, Colwell LJ, Sheridan R, Hopf TA, Pagnani A, Zecchina R, Sander C, « Protein 3D structure computed from evolutionary sequence variation », PLOS ONE, vol. 6, n^o 12,‎ 2011, e28766 (PMID 22163331, PMCID 3233603, DOI 10.1371/journal.pone.0028766, Bibcode 2011PLoSO...628766M)
(en) Burger L, van Nimwegen E, « Disentangling direct from indirect co-evolution of residues in protein alignments », PLOS Computational Biology, vol. 6, n^o 1,‎ janvier 2010, e1000633 (PMID 20052271, PMCID 2793430, DOI 10.1371/journal.pcbi.1000633, Bibcode 2010PLSCB...6E0633B)
(en) Morcos F, Pagnani A, Lunt B, Bertolino A, Marks DS, Sander C, Zecchina R, Onuchic JN, Hwa T, Weigt M, « Direct-coupling analysis of residue coevolution captures native contacts across many protein families », Proceedings of the National Academy of Sciences of the United States of America, vol. 108, n^o 49,‎ décembre 2011, E1293-301 (PMID 22106262, PMCID 3241805, DOI 10.1073/pnas.1111471108 , Bibcode 2011PNAS..108E1293M, arXiv 1110.5223)
(en) Nugent T, Jones DT, « Accurate de novo structure prediction of large transmembrane protein domains using fragment-assembly and correlated mutation analysis », Proceedings of the National Academy of Sciences of the United States of America, vol. 109, n^o 24,‎ juin 2012, E1540-7 (PMID 22645369, PMCID 3386101, DOI 10.1073/pnas.1120036109 , Bibcode 2012PNAS..109E1540N)
(en) Zhang Y, Skolnick J, « The protein structure prediction problem could be solved using the current PDB library », Proceedings of the National Academy of Sciences of the United States of America, vol. 102, n^o 4,‎ janvier 2005, p. 1029–34 (PMID 15653774, PMCID 545829, DOI 10.1073/pnas.0407152101 , Bibcode 2005PNAS..102.1029Z)
(en) Bowie JU, Lüthy R, Eisenberg D, « A method to identify protein sequences that fold into a known three-dimensional structure », Science, vol. 253, n^o 5016,‎ juillet 1991, p. 164–70 (PMID 1853201, DOI 10.1126/science.1853201, Bibcode 1991Sci...253..164B)

harvard.edu

ui.adsabs.harvard.edu

(en) Cheung NJ, Yu W, « De novo protein structure prediction using ultra-fast molecular dynamics simulation », PLOS ONE, vol. 13, n^o 11,‎ novembre 2018, e0205819 (PMID 30458007, PMCID 6245515, DOI 10.1371/journal.pone.0205819, Bibcode 2018PLoSO..1305819C)
(en) Neher E, « How frequent are correlated changes in families of protein sequences? », Proceedings of the National Academy of Sciences of the United States of America, vol. 91, n^o 1,‎ janvier 1994, p. 98–102 (PMID 8278414, PMCID 42893, DOI 10.1073/pnas.91.1.98, Bibcode 1994PNAS...91...98N)
(en) Marks DS, Colwell LJ, Sheridan R, Hopf TA, Pagnani A, Zecchina R, Sander C, « Protein 3D structure computed from evolutionary sequence variation », PLOS ONE, vol. 6, n^o 12,‎ 2011, e28766 (PMID 22163331, PMCID 3233603, DOI 10.1371/journal.pone.0028766, Bibcode 2011PLoSO...628766M)
(en) Burger L, van Nimwegen E, « Disentangling direct from indirect co-evolution of residues in protein alignments », PLOS Computational Biology, vol. 6, n^o 1,‎ janvier 2010, e1000633 (PMID 20052271, PMCID 2793430, DOI 10.1371/journal.pcbi.1000633, Bibcode 2010PLSCB...6E0633B)
(en) Morcos F, Pagnani A, Lunt B, Bertolino A, Marks DS, Sander C, Zecchina R, Onuchic JN, Hwa T, Weigt M, « Direct-coupling analysis of residue coevolution captures native contacts across many protein families », Proceedings of the National Academy of Sciences of the United States of America, vol. 108, n^o 49,‎ décembre 2011, E1293-301 (PMID 22106262, PMCID 3241805, DOI 10.1073/pnas.1111471108 , Bibcode 2011PNAS..108E1293M, arXiv 1110.5223)
(en) Nugent T, Jones DT, « Accurate de novo structure prediction of large transmembrane protein domains using fragment-assembly and correlated mutation analysis », Proceedings of the National Academy of Sciences of the United States of America, vol. 109, n^o 24,‎ juin 2012, E1540-7 (PMID 22645369, PMCID 3386101, DOI 10.1073/pnas.1120036109 , Bibcode 2012PNAS..109E1540N)
(en) Zhang Y, Skolnick J, « The protein structure prediction problem could be solved using the current PDB library », Proceedings of the National Academy of Sciences of the United States of America, vol. 102, n^o 4,‎ janvier 2005, p. 1029–34 (PMID 15653774, PMCID 545829, DOI 10.1073/pnas.0407152101 , Bibcode 2005PNAS..102.1029Z)
(en) Bowie JU, Lüthy R, Eisenberg D, « A method to identify protein sequences that fold into a known three-dimensional structure », Science, vol. 253, n^o 5016,‎ juillet 1991, p. 164–70 (PMID 1853201, DOI 10.1126/science.1853201, Bibcode 1991Sci...253..164B)

issn.org

portal.issn.org

(en) Márcio Dorn, Mariel Barbachan e Silva, Luciana S. Buriol et Luis C. Lamb, « Three-dimensional protein structure prediction: Methods and computational strategies », Computational Biology and Chemistry, vol. 53,‎ 1^er décembre 2014, p. 251–276 (ISSN 1476-9271, PMID 25462334, DOI 10.1016/j.compbiolchem.2014.10.001, lire en ligne)

nih.gov

ncbi.nlm.nih.gov

(en) JY. Huang et DL. Brutlag, « The emotif database », Nucleic Acids Res, vol. 29, n^o 1,‎ janvier 2001, p. 202-04 (PMID 11125091, DOI 10.1093 / nar / 29.1.202).
(en) W. Pirovano et J. Heringa, Data Mining Techniques for the Life Sciences, vol. 609, coll. « Methods in Molecular Biology », 2010, 327-48 p. (PMID 20221928, DOI 10.1007 / 978-1-60327-241-4_19), « Protein secondary structure prediction ».
(en) Márcio Dorn, Mariel Barbachan e Silva, Luciana S. Buriol et Luis C. Lamb, « Three-dimensional protein structure prediction: Methods and computational strategies », Computational Biology and Chemistry, vol. 53,‎ 1^er décembre 2014, p. 251–276 (ISSN 1476-9271, PMID 25462334, DOI 10.1016/j.compbiolchem.2014.10.001, lire en ligne)
(en) Zhang Y., « Progress and challenges in protein structure prediction », Current Opinion in Structural Biology, vol. 18, n^o 3,‎ 2008, p. 342–8 (PMID 18436442, PMCID 2680823, DOI 10.1016/j.sbi.2008.02.004).
(en) Pierce LC, Salomon-Ferrer R, de Oliveira CA, McCammon JA, Walker RC, « Routine Access to Millisecond Time Scale Events with Accelerated Molecular Dynamics », Journal of Chemical Theory and Computation, vol. 8, n^o 9,‎ septembre 2012, p. 2997–3002 (PMID 22984356, PMCID 3438784, DOI 10.1021/ct300284c)
(en) Kmiecik S, Gront D, Kolinski M, Wieteska L, Dawid AE, Kolinski A, « Coarse-Grained Protein Models and Their Applications », Chemical Reviews, vol. 116, n^o 14,‎ juillet 2016, p. 7898–936 (PMID 27333362, DOI 10.1021/acs.chemrev.6b00163)
(en) Cheung NJ, Yu W, « De novo protein structure prediction using ultra-fast molecular dynamics simulation », PLOS ONE, vol. 13, n^o 11,‎ novembre 2018, e0205819 (PMID 30458007, PMCID 6245515, DOI 10.1371/journal.pone.0205819, Bibcode 2018PLoSO..1305819C)
(en) Göbel U, Sander C, Schneider R, Valencia A, « Correlated mutations and residue contacts in proteins », Proteins, vol. 18, n^o 4,‎ avril 1994, p. 309–17 (PMID 8208723, DOI 10.1002/prot.340180402, S2CID 14978727)
(en) Taylor WR, Hatrick K, « Compensating changes in protein multiple sequence alignments », Protein Engineering, vol. 7, n^o 3,‎ mars 1994, p. 341–8 (PMID 8177883, DOI 10.1093/protein/7.3.341)
(en) Neher E, « How frequent are correlated changes in families of protein sequences? », Proceedings of the National Academy of Sciences of the United States of America, vol. 91, n^o 1,‎ janvier 1994, p. 98–102 (PMID 8278414, PMCID 42893, DOI 10.1073/pnas.91.1.98, Bibcode 1994PNAS...91...98N)
(en) Marks DS, Colwell LJ, Sheridan R, Hopf TA, Pagnani A, Zecchina R, Sander C, « Protein 3D structure computed from evolutionary sequence variation », PLOS ONE, vol. 6, n^o 12,‎ 2011, e28766 (PMID 22163331, PMCID 3233603, DOI 10.1371/journal.pone.0028766, Bibcode 2011PLoSO...628766M)
(en) Burger L, van Nimwegen E, « Disentangling direct from indirect co-evolution of residues in protein alignments », PLOS Computational Biology, vol. 6, n^o 1,‎ janvier 2010, e1000633 (PMID 20052271, PMCID 2793430, DOI 10.1371/journal.pcbi.1000633, Bibcode 2010PLSCB...6E0633B)
(en) Morcos F, Pagnani A, Lunt B, Bertolino A, Marks DS, Sander C, Zecchina R, Onuchic JN, Hwa T, Weigt M, « Direct-coupling analysis of residue coevolution captures native contacts across many protein families », Proceedings of the National Academy of Sciences of the United States of America, vol. 108, n^o 49,‎ décembre 2011, E1293-301 (PMID 22106262, PMCID 3241805, DOI 10.1073/pnas.1111471108 , Bibcode 2011PNAS..108E1293M, arXiv 1110.5223)
(en) Nugent T, Jones DT, « Accurate de novo structure prediction of large transmembrane protein domains using fragment-assembly and correlated mutation analysis », Proceedings of the National Academy of Sciences of the United States of America, vol. 109, n^o 24,‎ juin 2012, E1540-7 (PMID 22645369, PMCID 3386101, DOI 10.1073/pnas.1120036109 , Bibcode 2012PNAS..109E1540N)
(en) Zhang Y, Skolnick J, « The protein structure prediction problem could be solved using the current PDB library », Proceedings of the National Academy of Sciences of the United States of America, vol. 102, n^o 4,‎ janvier 2005, p. 1029–34 (PMID 15653774, PMCID 545829, DOI 10.1073/pnas.0407152101 , Bibcode 2005PNAS..102.1029Z)
(en) Bowie JU, Lüthy R, Eisenberg D, « A method to identify protein sequences that fold into a known three-dimensional structure », Science, vol. 253, n^o 5016,‎ juillet 1991, p. 164–70 (PMID 1853201, DOI 10.1126/science.1853201, Bibcode 1991Sci...253..164B)

sciencedirect.com

(en) Márcio Dorn, Mariel Barbachan e Silva, Luciana S. Buriol et Luis C. Lamb, « Three-dimensional protein structure prediction: Methods and computational strategies », Computational Biology and Chemistry, vol. 53,‎ 1^er décembre 2014, p. 251–276 (ISSN 1476-9271, PMID 25462334, DOI 10.1016/j.compbiolchem.2014.10.001, lire en ligne)

semanticscholar.org

api.semanticscholar.org

(en) Göbel U, Sander C, Schneider R, Valencia A, « Correlated mutations and residue contacts in proteins », Proteins, vol. 18, n^o 4,‎ avril 1994, p. 309–17 (PMID 8208723, DOI 10.1002/prot.340180402, S2CID 14978727)