(en) Zárate, Taboada, Yocupicio-Monroy et Arias, « Human Virome. », Archives of Medical Research, vol. 48, no 8, , p. 701-716 (DOI10.1016/j.arcmed.2018.01.005)
(en) McDaniel, Breitbart, Mobberley et Long, « Metagenomic analysis of lysogeny in Tampa Bay: implications for prophage gene expression. », PLOS ONE, vol. 3, no 9, , e3263 (PMID18810270, PMCID2533394, DOI10.1371/journal.pone.0003263)
(en) Barr, Auro, Furlan et Whiteson, « Bacteriophage adhering to mucus provide a non-host-derived immunity. », Proceedings of the National Academy of Sciences of the United States of America, vol. 110, no 26, , p. 10771–6 (PMID23690590, PMCID3696810, DOI10.1073/pnas.1305923110)
(en) Sharon, Battchikova, Aro et Giglione, « Comparative metagenomics of microbial traits within oceanic viral communities. », The ISME Journal, vol. 5, no 7, , p. 1178–90 (PMID21307954, PMCID3146289, DOI10.1038/ismej.2011.2)
(en) Breitbart, Salamon, Andresen et Mahaffy, « Genomic analysis of uncultured marine viral communities. », Proceedings of the National Academy of Sciences of the United States of America, vol. 99, no 22, , p. 14250–5 (PMID12384570, PMCID137870, DOI10.1073/pnas.202488399)
(en) Breitbart, Felts, Kelley et Mahaffy, « Diversity and population structure of a near-shore marine-sediment viral community. », Proceedings of the Royal Society B: Biological Sciences, vol. 271, no 1539, , p. 565–74 (PMID15156913, PMCID1691639, DOI10.1098/rspb.2003.2628)
Breitbart, Hewson, Felts et Mahaffy, « Metagenomic analyses of an uncultured viral community from human feces. », Journal of Bacteriology, vol. 185, no 20, , p. 6220–3 (PMID14526037, PMCID225035, DOI10.1128/jb.185.20.6220-6223.2003)
(en) Breitbart, Haynes, Kelley et Angly, « Viral diversity and dynamics in an infant gut. », Research in Microbiology, vol. 159, no 5, , p. 367–73 (PMID18541415, DOI10.1016/j.resmic.2008.04.006)
(en) Fierer, Breitbart, Nulton et Salamon, « Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of bacteria, archaea, fungi, and viruses in soil. », Applied and Environmental Microbiology, vol. 73, no 21, , p. 7059–66 (PMID17827313, PMCID2074941, DOI10.1128/aem.00358-07)
(en) Breitbart et Rohwer, « Method for discovering novel DNA viruses in blood using viral particle selection and shotgun sequencing. », BioTechniques, vol. 39, no 5, , p. 729–36 (PMID16312220, DOI10.2144/000112019)
(en) « IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses », Nucleic Acids Res., vol. 45, no D1, , D457–D465 (PMID27799466, PMCID5210529, DOI10.1093/nar/gkw1030)
(en) « IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes », Nucleic Acids Res., vol. 47, no Database issue, , D678–D686 (PMID30407573, PMCID6323928, DOI10.1093/nar/gky1127)
(en) Barr, Auro, Furlan et Whiteson, « Bacteriophage adhering to mucus provide a non-host-derived immunity. », Proceedings of the National Academy of Sciences of the United States of America, vol. 110, no 26, , p. 10771–6 (PMID23690590, PMCID3696810, DOI10.1073/pnas.1305923110)
(en) Sharon, Battchikova, Aro et Giglione, « Comparative metagenomics of microbial traits within oceanic viral communities. », The ISME Journal, vol. 5, no 7, , p. 1178–90 (PMID21307954, PMCID3146289, DOI10.1038/ismej.2011.2)
(en) Breitbart, Salamon, Andresen et Mahaffy, « Genomic analysis of uncultured marine viral communities. », Proceedings of the National Academy of Sciences of the United States of America, vol. 99, no 22, , p. 14250–5 (PMID12384570, PMCID137870, DOI10.1073/pnas.202488399)
(en) Breitbart, Felts, Kelley et Mahaffy, « Diversity and population structure of a near-shore marine-sediment viral community. », Proceedings of the Royal Society B: Biological Sciences, vol. 271, no 1539, , p. 565–74 (PMID15156913, PMCID1691639, DOI10.1098/rspb.2003.2628)
Breitbart, Hewson, Felts et Mahaffy, « Metagenomic analyses of an uncultured viral community from human feces. », Journal of Bacteriology, vol. 185, no 20, , p. 6220–3 (PMID14526037, PMCID225035, DOI10.1128/jb.185.20.6220-6223.2003)
(en) Breitbart, Haynes, Kelley et Angly, « Viral diversity and dynamics in an infant gut. », Research in Microbiology, vol. 159, no 5, , p. 367–73 (PMID18541415, DOI10.1016/j.resmic.2008.04.006)
(en) Fierer, Breitbart, Nulton et Salamon, « Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of bacteria, archaea, fungi, and viruses in soil. », Applied and Environmental Microbiology, vol. 73, no 21, , p. 7059–66 (PMID17827313, PMCID2074941, DOI10.1128/aem.00358-07)
(en) Breitbart et Rohwer, « Method for discovering novel DNA viruses in blood using viral particle selection and shotgun sequencing. », BioTechniques, vol. 39, no 5, , p. 729–36 (PMID16312220, DOI10.2144/000112019)
(en) « IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses », Nucleic Acids Res., vol. 45, no D1, , D457–D465 (PMID27799466, PMCID5210529, DOI10.1093/nar/gkw1030)
(en) « IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes », Nucleic Acids Res., vol. 47, no Database issue, , D678–D686 (PMID30407573, PMCID6323928, DOI10.1093/nar/gky1127)