References analysis of the Wikipedia article "ADN non codificante" in the Galician version

biu.ac.il

havlin.biu.ac.il

C.-K. Peng, S. V. Buldyrev, A. L. Goldberger, S. Havlin, F. Sciortino, M. Simons, H. E. Stanley; Buldyrev, SV; Goldberger, AL; Havlin, S; Sciortino, F; Simons, M; Stanley, HE (1992). "Long-range correlations in nucleotide sequences". Nature 356 (6365): 168–70. Bibcode:1992Natur.356..168P. PMID 1301010. doi:10.1038/356168a0. Arquivado dende o orixinal o 06 de novembro de 2018. Consultado o 02 de xaneiro de 2019.

S. V. Buldyrev, A. L. Goldberger, S. Havlin, R. N. Mantegna, M. Matsa, C.-K. Peng, M. Simons, and H. E. Stanley; Goldberger, A.; Havlin, S.; Mantegna, R.; Matsa, M.; Peng, C.-K.; Simons, M.; Stanley, H. (1995). "Long-range correlations properties of coding and noncoding DNA sequences: GenBank analysis". Phys. Rev. E 51 (5): 5084. Bibcode:1995PhRvE..51.5084B. doi:10.1103/PhysRevE.51.5084. Arquivado dende o orixinal o 08 de maio de 2018. Consultado o 02 de xaneiro de 2019.

doi.org

dx.doi.org

Elgar G, Vavouri T; Vavouri (July 2008). "Tuning in to the signals: noncoding sequence conservation in vertebrate genomes". Trends Genet. 24 (7): 344–52. PMID 18514361. doi:10.1016/j.tig.2008.04.005.

The ENCODE Project Consortium; Dunham; Aldred; Collins; Davis; Doyle; Epstein; Frietze; Harrow; Kaul; Khatun; Lajoie; Landt; Lee; Pauli; Rosenbloom; Sabo; Safi; Sanyal; Shoresh; Simon; Song; Altshuler; Birney; Brown; Cheng; Djebali; Dong; Dunham; et al. (2012). "An integrated encyclopedia of DNA elements in the human genome". Nature 489 (7414): 57–74. Bibcode:2012Natur.489...57T. PMC 3439153. PMID 22955616. doi:10.1038/nature11247.

Pennisi, E. (Sep 2012). "Genomics. ENCODE project writes eulogy for junk DNA". Science 337 (6099): 1159, 1161. PMID 22955811. doi:10.1126/science.337.6099.1159.

Dan Graur, Yichen Zheng, Nicholas Price, Ricardo B. R. Azevedo1, Rebecca A. Zufall1 and Eran Elhaik (2013). "On the immortality of television sets: "function" in the human genome according to the evolution-free gospel of ENCODE" (PDF). Genome Biology and Evolution 5 (3): 578–90. PMC 3622293. PMID 23431001. doi:10.1093/gbe/evt028.

Chris M. Rands, Stephen Meader, Chris P. Ponting and Gerton Lunter (2014). "8.2% of the Human Genome Is Constrained: Variation in Rates of Turnover across Functional Element Classes in the Human Lineage". PLoS Genet 10 (7): e1004525. PMC 4109858. PMID 25057982. doi:10.1371/journal.pgen.1004525.

Ohno S (1972). "An argument for the genetic simplicity of man and other mammals". Journal of Human Evolution 1 (6): 651–662. doi:10.1016/0047-2484(72)90011-5.

Morange, Michel (2014). "Genome as a Multipurpose Structure Built by Evolution" (PDF). Perspectives in Biology and Medicine 57 (1): 162–171. PMID 25345709. doi:10.1353/pbm.2014.0008.

Palazzo, A F; Kejiou, N S (2022). "Non-Darwinian Molecular Biology". Front. Genet. 13: 831068. PMC 8888898. PMID 35251134. doi:10.3389/fgene.2022.831068.

Germain PL, Ratti E, and Boem F (2014). "Junk or functional DNA? ENCODE and the function controversy". Biology & Philosophy 29 (6): 807–821. doi:10.1007/s10539-014-9441-3.

Mattick, John S (2023). "RNA out of the mist". Trends in Genetics 39 (3): 187–207. PMID 36528415. doi:10.1016/j.tig.2022.11.001.

Kellis M, Wold B, Snyder MP, Bernstein BE, Kundaje A, Marinov GK, Ward LD, Birney E, Crawford GE, Dekker J, Dunham I, Elnitski LL, Farnham PJ, Feingold EA, Gerstein M, Giddings MC, Gilbert DM, Gingeras TR, Green ED, Guigo R, Hubbard T, Kent J, Lieb JD, Myers RM, Pazin MJ, Ren B, Stamatoyannopoulos JA, Weng Z, White KP, Hardison RC (April 2014). "Defining functional DNA elements in the human genome". Proceedings of the National Academy of Sciences of the United States of America 111 (17): 6131–6138. Bibcode:2014PNAS..111.6131K. PMC 4035993. PMID 24753594. doi:10.1073/pnas.1318948111.

Wahls, W.P.; et al. (1990). "Hypervariable minisatellite DNA is a hotspot for homologous recombination in human cells". Cell 60 (1): 95–103. PMID 2295091. doi:10.1016/0092-8674(90)90719-U.

Pennisi, Elizabeth (2007). "DNA Study Forces Rethink of What It Means to Be a Gene". Science 316 (5831): 1556–7. PMID 17569836. doi:10.1126/science.316.5831.1556.

Struhl, Kevin (2007). "Transcriptional noise and the fidelity of initiation by RNA polymerase II". Nature Structural & Molecular Biology 14 (2): 103–105. PMID 17277804. doi:10.1038/nsmb0207-103.

Li M, Marin-Muller C, Bharadwaj U, Chow KH, Yao Q, Chen C; Marin-Muller; Bharadwaj; Chow; Yao; Chen (April 2009). "MicroRNAs: Control and Loss of Control in Human Physiology and Disease". World J Surg 33 (4): 667–84. PMC 2933043. PMID 19030926. doi:10.1007/s00268-008-9836-x.

Visel A; Rubin EM; Pennacchio LA (September 2009). "Genomic Views of Distant-Acting Enhancers". Nature 461 (7261): 199–205. Bibcode:2009Natur.461..199V. PMC 2923221. PMID 19741700. doi:10.1038/nature08451.

Nielsen H, Johansen SD; Johansen (2009). "Group I introns: Moving in new directions". RNA Biol 6 (4): 375–83. PMID 19667762. doi:10.4161/rna.6.4.9334.

Zheng D, Frankish A, Baertsch R; et al. (June 2007). "Pseudogenes in the ENCODE regions: Consensus annotation, analysis of transcription, and evolution". Genome Res. 17 (6): 839–51. PMC 1891343. PMID 17568002. doi:10.1101/gr.5586307.

Marshall CR, Raff EC, Raff RA; Raff; Raff (December 1994). "Dollo's law and the death and resurrection of genes". Proc. Natl. Acad. Sci. U.S.A. 91 (25): 12283–7. Bibcode:1994PNAS...9112283M. PMC 45421. PMID 7991619. doi:10.1073/pnas.91.25.12283.

Tutar, Y. (2012). "Pseudogenes". Comp Funct Genomics 2012: 424526. PMC 3352212. PMID 22611337. doi:10.1155/2012/424526.

Petrov DA, Hartl DL; Hartl (2000). "Pseudogene evolution and natural selection for a compact genome". J. Hered. 91 (3): 221–7. PMID 10833048. doi:10.1093/jhered/91.3.221.

Ponicsan SL, Kugel JF, Goodrich JA; Kugel; Goodrich (February 2010). "Genomic gems: SINE RNAs regulate mRNA production". Current Opinion in Genetics & Development 20 (2): 149–55. PMC 2859989. PMID 20176473. doi:10.1016/j.gde.2010.01.004.

Häsler J, Samuelsson T, Strub K; Samuelsson; Strub (July 2007). "Useful 'junk': Alu RNAs in the human transcriptome". Cell. Mol. Life Sci. 64 (14): 1793–800. PMID 17514354. doi:10.1007/s00018-007-7084-0.

Walters RD, Kugel JF, Goodrich JA; Kugel; Goodrich (Aug 2009). "InvAluable junk: the cellular impact and function of Alu and B2 RNAs". IUBMB Life 61 (8): 831–7. PMC 4049031. PMID 19621349. doi:10.1002/iub.227.

Nelson, PN.; Hooley, P.; Roden, D.; Davari Ejtehadi, H.; Rylance, P.; Warren, P.; Martin, J.; Murray, PG. (Oct 2004). "Human endogenous retroviruses: transposable elements with potential?". Clin Exp Immunol 138 (1): 1–9. PMC 1809191. PMID 15373898. doi:10.1111/j.1365-2249.2004.02592.x.

International Human Genome Sequencing Consortium; Linton; Birren; Nusbaum; Zody; Baldwin; Devon; Dewar; Doyle; Fitzhugh; Funke; Gage; Harris; Heaford; Howland; Kann; Lehoczky; Levine; McEwan; McKernan; Meldrim; Mesirov; Miranda; Morris; Naylor; Raymond; Rosetti; Santos; Sheridan; et al. (February 2001). "Initial sequencing and analysis of the human genome". Nature 409 (6822): 879–888. Bibcode:2001Natur.409..860L. PMID 11237011. doi:10.1038/35057062.

Piegu, B.; Guyot, R.; Picault, N.; Roulin, A.; Sanyal, A.; Saniyal, A.; Kim, H.; Collura, K.; et al. (Oct 2006). "Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice". Genome Res 16 (10): 1262–9. PMC 1581435. PMID 16963705. doi:10.1101/gr.5290206.

Hawkins, JS.; Kim, H.; Nason, JD.; Wing, RA.; Wendel, JF. (Oct 2006). "Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium". Genome Res 16 (10): 1252–61. PMC 1581434. PMID 16954538. doi:10.1101/gr.5282906.

Ehret CF, De Haller G; De Haller (1963). "Origin, development, and maturation of organelles and organelle systems of the cell surface in Paramecium". Journal of Ultrastructure Research. 9 Supplement 1: 1, 3–42. PMID 14073743. doi:10.1016/S0022-5320(63)80088-X.

Doolittle WF, Sapienza C; Sapienza (1980). "Selfish genes, the phenotype paradigm and genome evolution". Nature 284 (5757): 601–603. Bibcode:1980Natur.284..601D. PMID 6245369. doi:10.1038/284601a0.

Orgel LE, Crick FH; Crick (April 1980). "Selfish DNA: the ultimate parasite". Nature 284 (5757): 604–7. Bibcode:1980Natur.284..604O. PMID 7366731. doi:10.1038/284604a0.

Khajavinia A, Makalowski W; Makalowski (May 2007). "What is "junk" DNA, and what is it worth?". Scientific American 296 (5): 104. PMID 17503549. doi:10.1038/scientificamerican0307-104. The term "junk DNA" repelled mainstream researchers from studying noncoding genetic material for many years

Biémont, Christian; Vieira, C (2006). "Genetics: Junk DNA as an evolutionary force". Nature 443 (7111): 521–4. Bibcode:2006Natur.443..521B. PMID 17024082. doi:10.1038/443521a.

Doolittle, W. Ford (2013). "Is junk DNA bunk? A critique of ENCODE". Proc Natl Acad Sci USA 110 (14): 5294–5300. Bibcode:2013PNAS..110.5294D. PMC 3619371. PMID 23479647. doi:10.1073/pnas.1221376110.

Kellis, M.; et al. (2014). "Defining functional DNA elements in the human genome". PNAS 111 (17): 6131–6138. Bibcode:2014PNAS..111.6131K. PMC 4035993. PMID 24753594. doi:10.1073/pnas.1318948111.

Ludwig MZ (December 2002). "Functional evolution of noncoding DNA". Current Opinion in Genetics & Development 12 (6): 634–9. PMID 12433575. doi:10.1016/S0959-437X(02)00355-6.

Cobb J, Büsst C, Petrou S, Harrap S, Ellis J; Büsst; Petrou; Harrap; Ellis (April 2008). "Searching for functional genetic variants in non-coding DNA". Clin. Exp. Pharmacol. Physiol. 35 (4): 372–5. PMID 18307723. doi:10.1111/j.1440-1681.2008.04880.x.

E Khurana, Y Fu, V Colonna, XJ Mu, HM Kang, T Lappalainen, A Sboner, L Lochovsky, J Chen, A Harmanci, J Das, A Abyzov, S Balasubramanian, K Beal, D Chakravarty, D Challis, Y Chen, D Clarke, L Clarke, F Cunningham, US Evani, P Flicek, R Fragoza, E Garrison, R Gibbs, ZH Gumus, J Herrero, N Kitabayashi, Y Kong, K Lage, V Liluashvili, SM Lipkin, DG MacArthur, G Marth, D Muzny, TH Pers, GR Ritchie, JA Rosenfeld, C Sisu, X Wei, M Wilson, Y Xue, F Yu, 1000 Genomes Project Consortium, ET Dermitzakis, H Yu, MA Rubin, C Tyler-Smith, M Gerstein; Fu; Colonna; Mu; Kang; Lappalainen; Sboner; Lochovsky; Chen; Harmanci; Das; Abyzov; Balasubramanian; Beal; Chakravarty; Challis; Chen; Clarke; Clarke; Cunningham; Evani; Flicek; Fragoza; Garrison; Gibbs; Gümüs; Herrero; Kitabayashi; Kong; et al. (April 2013). "Integrative annotation of variants from 1092 humans: application to cancer genomics". Science 342 (6154): 372–5. PMC 3947637. PMID 24092746. doi:10.1111/j.1440-1681.2008.04880.x.

Subirana JA, Messeguer X; Messeguer (March 2010). "The most frequent short sequences in non-coding DNA". Nucleic Acids Res. 38 (4): 1172–81. PMC 2831315. PMID 19966278. doi:10.1093/nar/gkp1094.

S. E. Ahnert; T. M. A. Fink (2008). "How much non-coding DNA do eukaryotes require?" (PDF). J. Theor. Biol. 252 (4): 587–592. PMID 18384817. doi:10.1016/j.jtbi.2008.02.005. Arquivado dende o orixinal (PDF) o 28 de xullo de 2019. Consultado o 02 de xaneiro de 2019.

Smith MA; et al. (June 2013). "Widespread purifying selection on RNA structure in mammals". Nucleic Acids Research 41 (17): 8220–8236. PMC 3783177. PMID 23847102. doi:10.1093/nar/gkt596.

Carroll, Sean B.; et al. (May 2008). "Regulating Evolution". Scientific American 298 (5): 60–67. PMID 18444326. doi:10.1038/scientificamerican0508-60.

Balakirev ES, Ayala FJ; Ayala (2003). "Pseudogenes: are they "junk" or functional DNA?". Annu. Rev. Genet. 37: 123–51. PMID 14616058. doi:10.1146/annurev.genet.37.040103.103949.

W. Li and, K. Kaneko; Kaneko, K (1992). "Long-Range Correlation and Partial 1/f^alpha Spectrum in a Non-Coding DNA Sequence" (PDF). Europhys. Lett 17 (7): 655–660. Bibcode:1992EL.....17..655L. doi:10.1209/0295-5075/17/7/014.

harvard.edu

adsabs.harvard.edu

Orgel LE, Crick FH; Crick (April 1980). "Selfish DNA: the ultimate parasite". Nature 284 (5757): 604–7. Bibcode:1980Natur.284..604O. PMID 7366731. doi:10.1038/284604a0.

Biémont, Christian; Vieira, C (2006). "Genetics: Junk DNA as an evolutionary force". Nature 443 (7111): 521–4. Bibcode:2006Natur.443..521B. PMID 17024082. doi:10.1038/443521a.

nih.gov

ncbi.nlm.nih.gov

Koonin, Eugene V.; Wolf, Yuri I. (NaN undefined NaN). "Constraints and plasticity in genome and molecular-phenome evolution". Nature Reviews Genetics 11 (7): 487–498. DOI:10.1038/nrg2810. PMC 3273317. PMID 20548290. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3273317. Cita: "As rexións non codificantes constitúen só o 10-15% do xenoma da maioría dos procariotas de vida libre, e unha considerable fracción destas secuencias comprende elementos reguladores que están substancialmente constrinxidos na súa evolución. Os xenomas da maioría dos virus son aínda máis compactos, con case toda a súa secuencia xenómica ocupada por xenes codificantes de proteínas".

Pennisi, E. (Sep 2012). "Genomics. ENCODE project writes eulogy for junk DNA". Science 337 (6099): 1159, 1161. PMID 22955811. doi:10.1126/science.337.6099.1159.

Morange, Michel (2014). "Genome as a Multipurpose Structure Built by Evolution" (PDF). Perspectives in Biology and Medicine 57 (1): 162–171. PMID 25345709. doi:10.1353/pbm.2014.0008.

Palazzo, A F; Kejiou, N S (2022). "Non-Darwinian Molecular Biology". Front. Genet. 13: 831068. PMC 8888898. PMID 35251134. doi:10.3389/fgene.2022.831068.

Mattick, John S (2023). "RNA out of the mist". Trends in Genetics 39 (3): 187–207. PMID 36528415. doi:10.1016/j.tig.2022.11.001.

Gregory TR, Hebert PD; Hebert (April 1999). "The modulation of DNA content: proximate causes and ultimate consequences". Genome Res. 9 (4): 317–24. PMID 10207154. doi:10.1101/gr.9.4.317 (inactivo 2015-02-01).

Wahls, W.P.; et al. (1990). "Hypervariable minisatellite DNA is a hotspot for homologous recombination in human cells". Cell 60 (1): 95–103. PMID 2295091. doi:10.1016/0092-8674(90)90719-U.

Pennisi, Elizabeth (2007). "DNA Study Forces Rethink of What It Means to Be a Gene". Science 316 (5831): 1556–7. PMID 17569836. doi:10.1126/science.316.5831.1556.

Struhl, Kevin (2007). "Transcriptional noise and the fidelity of initiation by RNA polymerase II". Nature Structural & Molecular Biology 14 (2): 103–105. PMID 17277804. doi:10.1038/nsmb0207-103.

Nielsen H, Johansen SD; Johansen (2009). "Group I introns: Moving in new directions". RNA Biol 6 (4): 375–83. PMID 19667762. doi:10.4161/rna.6.4.9334.

Tutar, Y. (2012). "Pseudogenes". Comp Funct Genomics 2012: 424526. PMC 3352212. PMID 22611337. doi:10.1155/2012/424526.

Petrov DA, Hartl DL; Hartl (2000). "Pseudogene evolution and natural selection for a compact genome". J. Hered. 91 (3): 221–7. PMID 10833048. doi:10.1093/jhered/91.3.221.

Orgel LE, Crick FH; Crick (April 1980). "Selfish DNA: the ultimate parasite". Nature 284 (5757): 604–7. Bibcode:1980Natur.284..604O. PMID 7366731. doi:10.1038/284604a0.

Biémont, Christian; Vieira, C (2006). "Genetics: Junk DNA as an evolutionary force". Nature 443 (7111): 521–4. Bibcode:2006Natur.443..521B. PMID 17024082. doi:10.1038/443521a.

Ludwig MZ (December 2002). "Functional evolution of noncoding DNA". Current Opinion in Genetics & Development 12 (6): 634–9. PMID 12433575. doi:10.1016/S0959-437X(02)00355-6.

Subirana JA, Messeguer X; Messeguer (March 2010). "The most frequent short sequences in non-coding DNA". Nucleic Acids Res. 38 (4): 1172–81. PMC 2831315. PMID 19966278. doi:10.1093/nar/gkp1094.

Smith MA; et al. (June 2013). "Widespread purifying selection on RNA structure in mammals". Nucleic Acids Research 41 (17): 8220–8236. PMC 3783177. PMID 23847102. doi:10.1093/nar/gkt596.

Carroll, Sean B.; et al. (May 2008). "Regulating Evolution". Scientific American 298 (5): 60–67. PMID 18444326. doi:10.1038/scientificamerican0508-60.

Balakirev ES, Ayala FJ; Ayala (2003). "Pseudogenes: are they "junk" or functional DNA?". Annu. Rev. Genet. 37: 123–51. PMID 14616058. doi:10.1146/annurev.genet.37.040103.103949.

sciencemag.org

web.archive.org

"Worlds Record Breaking Plant: Deletes its Noncoding "Junk" DNA". Design & Trend. May 12, 2013. Arquivado dende o orixinal o 25 de marzo de 2016. Consultado o 2013-06-04.

Ohno, Susumu (1972). H. H. Smith, ed. So Much "Junk" DNA in Our Genome. Gordon and Breach, New York. pp. 366–370. Arquivado dende o orixinal o 27 de maio de 2019. Consultado o 2013-05-15.

Sean Eddy (2012) The C-value paradox, junk DNA, and ENCODE Arquivado 23 de outubro de 2013 en Wayback Machine., Curr Biol 22(21):R898–R899.

ADN non codificante (Galician Wikipedia)

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