Aliñamento múltiple de secuencias (Galician Wikipedia)

Analysis of information sources in references of the Wikipedia article "Aliñamento múltiple de secuencias" in Galician language version.

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4archive.org

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1oxfordjournals.org

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archive.org

Castresana J (2000). "Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis". Mol Biol Evol 17: 540–552. doi:10.1093/oxfordjournals.molbev.a026334.
Loytynoja A, Milinkovitch MC (2001). "SOAP, cleaning multiple alignments from unstable blocks". Bioinformatics 17: 573–574. doi:10.1093/bioinformatics/17.6.573.
Penn O, Privman E, Landan G, Graur D, Pupko T (2010). "An Alignment Confidence Score Capturing Robustness to Guide Tree Uncertainty". Mol Biol Evol 27: 1759–1767. doi:10.1093/molbev/msq066.
Redelings BD, Suchard MA (2005). "Joint Bayesian Estimation of Alignment and Phylogeny". Systematic Biology 54: 401–418. doi:10.1080/10635150590947041.

doi.org

dx.doi.org

Salama RA, Stekel DJ (2013). "A non-independent energy-based multiple sequence alignment improves prediction of transcription factor binding sites". Bioinformatics. doi:10.1093/bioinformatics/btt463.
Nuin PA, Wang Z, Tillier ER (2006). "The accuracy of several multiple sequence alignment programs for proteins". BMC Bioinformatics 7: 471. PMC 1633746. PMID 17062146. doi:10.1186/1471-2105-7-471.
Castresana J (2000). "Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis". Mol Biol Evol 17: 540–552. doi:10.1093/oxfordjournals.molbev.a026334.
Loytynoja A, Milinkovitch MC (2001). "SOAP, cleaning multiple alignments from unstable blocks". Bioinformatics 17: 573–574. doi:10.1093/bioinformatics/17.6.573.
Poirot O, O’Toole E, Notredame C (2003). "Tcoffee@igs: a web server for computing, evaluating and combining multiple sequence alignments". Nucleic Acids Res 31: 3503–3506. doi:10.1093/nar/gkg522.
Chang, JM; Di Tommaso, P; Notredame, C (Jun 2014). "TCS: A New Multiple Sequence Alignment Reliability Measure to Estimate Alignment Accuracy and Improve Phylogenetic Tree Reconstruction.". Molecular Biology and Evolution 31 (6): 1625–37. PMID 24694831. doi:10.1093/molbev/msu117.
Bradley RK, Roberts A, Smoot M, Juvekar S, Do J, Dewey C, Holmes I, Pachter L (2009). "Fast statistical alignment". PLoS Comput Biol 5: e1000392. doi:10.1371/journal.pcbi.1000392.
Landan G, Graur D (2008). "Local reliability measures from sets of co-optimal multiple sequence alignments". Pac Symp Biocomput 13: 15–24. doi:10.1142/9789812776136_0003.
Penn O, Privman E, Landan G, Graur D, Pupko T (2010). "An Alignment Confidence Score Capturing Robustness to Guide Tree Uncertainty". Mol Biol Evol 27: 1759–1767. doi:10.1093/molbev/msq066.
Redelings BD, Suchard MA (2005). "Joint Bayesian Estimation of Alignment and Phylogeny". Systematic Biology 54: 401–418. doi:10.1080/10635150590947041.

ebi.ac.uk

"Help with matrices used in sequence comparison tools". European Bioinformatics Institute. Arquivado dende o orixinal o 11 de marzo de 2010. Consultado o March 3, 2010.

embl.de

"Manual editing and adjustment of MSAs". European Molecular Biology Laboratory. 2007. Arquivado dende o orixinal o 24 de setembro de 2015. Consultado o March 7, 2010.
Budd, Aidan (10 February 2009). "Multiple sequence alignment exercises and demonstrations". European Molecular Biology Laboratory. Arquivado dende o orixinal o 05 de marzo de 2012. Consultado o June 30, 2010.

nih.gov

ncbi.nlm.nih.gov

Loytynoja, A.; Goldman, N. (2008). "Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis". Science 320 (5883): 1632–1635. doi:10.1126/science.1158395. PMID 18566285.
Loytynoja, A.; Vilella, A. J.; Goldman, N. (2012). "Accurate extension of multiple sequence alignments using a phylogeny-aware graph algorithm". Bioinformatics 28 (13): 1684–1691. doi:10.1093/bioinformatics/bts198. PMC 3381962. PMID 22531217.
Szalkowski, A. M. (2012). "Fast and robust multiple sequence alignment with phylogenyaware gap placement". BMC Bioinformatics 13: 129–1180. doi:10.1186/1471-2105-13-129. PMC 3495709. PMID 22694311.
Nuin PA, Wang Z, Tillier ER (2006). "The accuracy of several multiple sequence alignment programs for proteins". BMC Bioinformatics 7: 471. PMC 1633746. PMID 17062146. doi:10.1186/1471-2105-7-471.
Chang, JM; Di Tommaso, P; Notredame, C (Jun 2014). "TCS: A New Multiple Sequence Alignment Reliability Measure to Estimate Alignment Accuracy and Improve Phylogenetic Tree Reconstruction.". Molecular Biology and Evolution 31 (6): 1625–37. PMID 24694831. doi:10.1093/molbev/msu117.

oxfordjournals.org

mbe.oxfordjournals.org

Chang, JM; Di Tommaso, P; Notredame, C (Jun 2014). "TCS: A New Multiple Sequence Alignment Reliability Measure to Estimate Alignment Accuracy and Improve Phylogenetic Tree Reconstruction.". Molecular Biology and Evolution 31 (6): 1625–37. PMID 24694831. doi:10.1093/molbev/msu117.

pnas.org

Loytynoja, A. (2005). "An algorithm for progressive multiple alignment of sequences with insertions". Proceedings of the National Academy of Sciences 102 (30): 10557–10562. doi:10.1073/pnas.0409137102. [1]

web.archive.org

"Help with matrices used in sequence comparison tools". European Bioinformatics Institute. Arquivado dende o orixinal o 11 de marzo de 2010. Consultado o March 3, 2010.
"Manual editing and adjustment of MSAs". European Molecular Biology Laboratory. 2007. Arquivado dende o orixinal o 24 de setembro de 2015. Consultado o March 7, 2010.
Budd, Aidan (10 February 2009). "Multiple sequence alignment exercises and demonstrations". European Molecular Biology Laboratory. Arquivado dende o orixinal o 05 de marzo de 2012. Consultado o June 30, 2010.