ENCODE (Galician Wikipedia)

Analysis of information sources in references of the Wikipedia article "ENCODE" in Galician language version.

refsWebsite

Global rank Galician rank

29nih.gov

4^th place

6^th place

28doi.org

2^nd place

7^th place

14harvard.edu

18^th place

38^th place

10web.archive.org

1^st place

9genome.gov

9,308^th place

4,674^th place

6encodeproject.org

low place

3worldcat.org

5^th place

11^th place

2evolverzone.com

low place

2nature.com

234^th place

113^th place

1science.org

1,160^th place

3,413^th place

1sciencenews.org

3,410^th place

2,128^th place

1ihec-epigenomes.org

low place

1archives-ouvertes.fr

1,031^st place

1,902^nd place

1lbl.gov

2,509^th place

1,938^th place

1modencode.org

low place

1roadmapepigenomics.org

low place

1nytimes.com

7^th place

32^nd place

1sandwalk.blogspot.com

low place

1thefinchandpea.com

low place

1archive.org

6^th place

8^th place

1genomeinformatician.blogspot.com

low place

1mendelspod.com

low place

1factorbook.org

low place

archive.org

Carey, Nessa (2015). Junk DNA: A Journey Through the Dark Matter of the Genome. Columbia University Press. ISBN 9780231170840.

archives-ouvertes.fr

hal.archives-ouvertes.fr

Djebali S, Davis CA, Merkel A, Dobin A, Lassmann T, Mortazavi A, Tanzer A, Lagarde J, Lin W, et al. (setembro de 2012). "Landscape of transcription in human cells". Nature 489 (7414): 101–8. Bibcode:2012Natur.489..101D. PMC 3684276. PMID 22955620. doi:10.1038/nature11233.

doi.org

dx.doi.org

Hong EL, Sloan CA, Chan ET, Davidson JM, Malladi VS, Strattan JS, Hitz BC, Gabdank I, Narayanan AK, Ho M, Lee BT, Rowe LD, Dreszer TR, Roe GR, Podduturi NR, Tanaka F, Hilton JA, Cherry JM (xaneiro de 2016). "Principles of metadata organization at the ENCODE data coordination center. (2016 update)". Database 2016: baw001. PMC 4792520. PMID 26980513. doi:10.1093/database/baw001.
Raney BJ, Cline MS, Rosenbloom KR, Dreszer TR, Learned K, Barber GP, Meyer LR, Sloan CA, Malladi VS, Roskin KM, Suh BB, Hinrichs AS, Clawson H, Zweig AS, Kirkup V, Fujita PA, Rhead B, Smith KE, Pohl A, Kuhn RM, Karolchik D, Haussler D, Kent WJ (xaneiro de 2011). "ENCODE whole-genome data in the UCSC genome browser (2011 update)". Nucleic Acids Res. 39 (Database issue): D871–5. PMC 3013645. PMID 21037257. doi:10.1093/nar/gkq1017.
The ENCODE Project Consortium (2004). "The ENCODE (ENCyclopedia Of DNA Elements) Project". Science 306 (5696): 636–640. Bibcode:2004Sci...306..636E. PMID 15499007. doi:10.1126/science.1105136.
ENCODE Project Consortium (2011). Becker PB, ed. "A User's Guide to the Encyclopedia of DNA Elements (ENCODE)". PLOS Biology 9 (4): e1001046. PMC 3079585. PMID 21526222. doi:10.1371/journal.pbio.1001046.
ENCODE Project Consortium, Birney E, Stamatoyannopoulos JA, Dutta A, Guigó R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET, et al. (2007). "Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project". Nature 447 (7146): 799–816. Bibcode:2007Natur.447..799B. PMC 2212820. PMID 17571346. doi:10.1038/nature05874.
Guigó R, Flicek P, Abril JF, Reymond A, Lagarde J, Denoeud F, Antonarakis S, Ashburner M, Bajic VB, Birney E, Castelo R, Eyras E, Ucla C, Gingeras TR, Harrow J, Hubbard T, Lewis SE, Reese MG (2006). "EGASP: The human ENCODE Genome Annotation Assessment Project". Genome Biology 7 (Suppl 1): S2.1–31. PMC 1810551. PMID 16925836. doi:10.1186/gb-2006-7-s1-s2.
Davis, Carrie A.; Hitz, Benjamin C.; Sloan, Cricket A.; Chan, Esther T.; Davidson, Jean M.; Gabdank, Idan; Hilton, Jason A.; Jain, Kriti; Baymuradov, Ulugbek K.; Narayanan, Aditi K.; Onate, Kathrina C. (2018-01-04). "The Encyclopedia of DNA elements (ENCODE): data portal update". Nucleic Acids Research 46 (D1): D794–D801. ISSN 1362-4962. PMC 5753278. PMID 29126249. doi:10.1093/nar/gkx1081.
Weinstock GM (2007). "ENCODE: More genomic empowerment". Genome Research 17 (6): 667–668. PMID 17567987. doi:10.1101/gr.6534207.
Ecker JR, Bickmore WA, Barroso I, Pritchard JK, Gilad Y, Segal E (setembro de 2012). "Genomics: ENCODE explained". Nature 489 (7414): 52–5. Bibcode:2012Natur.489...52E. PMID 22955614. doi:10.1038/489052a.
Bernstein BE, Birney E, Dunham I, Green ED, Gunter C, Snyder M (setembro de 2012). "An integrated encyclopedia of DNA elements in the human genome". Nature 489 (7414): 57–74. Bibcode:2012Natur.489...57T. PMC 3439153. PMID 22955616. doi:10.1038/nature11247.
Thurman RE, Rynes E, Humbert R, Vierstra J, Maurano MT, Haugen E, Sheffield NC, Stergachis AB, Wang H, et al. (setembro de 2012). "The accessible chromatin landscape of the human genome". Nature 489 (7414): 75–82. Bibcode:2012Natur.489...75T. PMC 3721348. PMID 22955617. doi:10.1038/nature11232.
Neph S, Vierstra J, Stergachis AB, Reynolds AP, Haugen E, Vernot B, Thurman RE, John S, Sandstrom R, et al. (setembro de 2012). "An expansive human regulatory lexicon encoded in transcription factor footprints". Nature 489 (7414): 83–90. Bibcode:2012Natur.489...83N. PMC 3736582. PMID 22955618. doi:10.1038/nature11212.
Gerstein MB, Kundaje A, Hariharan M, Landt SG, Yan KK, Cheng C, Mu XJ, Khurana E, Rozowsky J, et al. (setembro de 2012). "Architecture of the human regulatory network derived from ENCODE data". Nature 489 (7414): 91–100. Bibcode:2012Natur.489...91G. PMC 4154057. PMID 22955619. doi:10.1038/nature11245.
Djebali S, Davis CA, Merkel A, Dobin A, Lassmann T, Mortazavi A, Tanzer A, Lagarde J, Lin W, et al. (setembro de 2012). "Landscape of transcription in human cells". Nature 489 (7414): 101–8. Bibcode:2012Natur.489..101D. PMC 3684276. PMID 22955620. doi:10.1038/nature11233.
Malladi VS, Erickson DT, Podduturi NR, Rowe LD, Chan ET, Davidson JM, Hitz BC, Ho M, Lee BT, Miyasato S, Roe GR, Simison M, Sloan CA, Strattan JS, Tanaka F, Kent WJ, Cherry JM, Hong EL (2015). "Ontology application and use at the ENCODE DCC". Database (Oxford) 2015. PMC 4360730. PMID 25776021. doi:10.1093/database/bav010.
Brian J. Raney; et al. (2010-10-30). "ENCODE whole-genome data in the UCSC genome browser (2011 update)". Nucleic Acids Res. (Nucleic Acids Research) 39 (Database issue): D871–5. PMC 3013645. PMID 21037257. doi:10.1093/nar/gkq1017.
Gerstein MB, Lu ZJ, Van Nostrand EL, Cheng C, Arshinoff BI, Liu T, Yip KY, Robilotto R, Rechtsteiner A, et al. (2010). "Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project". Science 330 (6012): 1775–1787. Bibcode:2010Sci...330.1775G. PMC 3142569. PMID 21177976. doi:10.1126/science.1196914.
modENCODE Consortium, Roy S, Ernst J, Kharchenko PV, Kheradpour P, Negre N, Eaton ML, Landolin JM, Bristow CA, Ma L, et al. (2010). "Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE". Science 330 (6012): 1787–1797. Bibcode:2010Sci...330.1787R. PMC 3192495. PMID 21177974. doi:10.1126/science.1198374.
Celniker S (2009-06-11). "Unlocking the secrets of the genome". Nature 459 (7249): 927–930. Bibcode:2009Natur.459..927C. PMC 2843545. PMID 19536255. doi:10.1038/459927a.
Kundaje, Anshul; Meuleman, Wouter; Ernst, Jason; Bilenky, Misha; Yen, Angela; Heravi-Moussavi, Alireza; Kheradpour, Pouya; Zhang, Zhizhuo; Wang, Jianrong; Ziller, Michael J.; Amin, Viren; Whitaker, John W.; Schultz, Matthew D.; Ward, Lucas D.; Sarkar, Abhishek; Quon, Gerald; Sandstrom, Richard S.; Eaton, Matthew L.; Wu, Yi-Chieh; Pfenning, Andreas R.; Wang, Xinchen; Claussnitzer, Melina; Liu, Yaping; Coarfa, Cristian; Harris, R. Alan; Shoresh, Noam; Epstein, Charles B.; Gjoneska, Elizabeta; Leung, Danny; et al. (2015). "Integrative analysis of 111 reference human epigenomes". Nature 518 (7539): 317–330. Bibcode:2015Natur.518..317.. PMC 4530010. PMID 25693563. doi:10.1038/nature14248.
Cho, Young-Dan; Kim, Woo-Jin; Ryoo, Hyun-Mo; Kim, Hong-Gee; Kim, Kyoung-Hwa; Ku, Young; Seol, Yang-Jo (2021-04-26). "Current advances of epigenetics in periodontology from ENCODE project: a review and future perspectives". Clinical Epigenetics 13 (1): 92. ISSN 1868-7083. PMC 8077755. PMID 33902683. doi:10.1186/s13148-021-01074-w.
Graur D, Zheng Y, Price N, Azevedo RB, Zufall RA, Elhaik E (2013). "On the immortality of television sets: "function" in the human genome according to the evolution-free gospel of ENCODE". Genome Biol Evol 5 (3): 578–90. PMC 3622293. PMID 23431001. doi:10.1093/gbe/evt028.
White MA, Myers CA, Corbo JC, Cohen BA (xullo de 2013). "Massively parallel in vivo enhancer assay reveals that highly local features determine the cis-regulatory function of ChIP-seq peaks". Proc. Natl. Acad. Sci. U.S.A. 110 (29): 11952–7. Bibcode:2013PNAS..11011952W. PMC 3718143. PMID 23818646. doi:10.1073/pnas.1307449110.
- Mike White (17 de xullo de 2013). "Finding function in the genome with a null hypothesis". The Finch & Pea.
- Mattick JS, Dinger ME (2013). "The extent of functionality in the human genome". The HUGO Journal 7 (1): 2. PMC 4685169. doi:10.1186/1877-6566-7-2.
- Kellis M, et al. (2014). "Defining functional DNA elements in the human genome". Proc. Natl. Acad. Sci. U.S.A. 111 (17): 6131–8. Bibcode:2014PNAS..111.6131K. PMC 4035993. PMID 24753594. doi:10.1073/pnas.1318948111.
- Germain, Pierre-Luc; Ratti, Emanuele; Boem, Federico (novembro de 2014). "Junk or Functional DNA? ENCODE and the Function Controversy". Biology & Philosophy 29 (6): 807–831. doi:10.1007/s10539-014-9441-3.
- Maher B (setembro de 2012). "ENCODE: The human encyclopaedia". Nature 489 (7414): 46–8. PMID 22962707. doi:10.1038/489046a.
- Wang J (2012-11-29). "Factorbook.org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium". Nucleic Acids Research 41 (Database issue): D171–6. PMC 3531197. PMID 23203885. doi:10.1093/nar/gks1221.

encodeproject.org

"The ENCODE Project: Project Overview". www.endodeproject.org. Consultado o 2023-02-23.
"Data Use, Software, and Analysis Release Policies – ENCODE". www.encodeproject.org. Consultado o 2021-12-18.
"The ENCODE Project: Project Overview". www.endodeproject.org. Consultado o 2023-02-23.
"The ENCODE Project: Project Overview". www.endodeproject.org. Consultado o 2023-02-23.
"Search – ENCODE".
"Search – ENCODE".

evolverzone.com

genomicron.evolverzone.com

Gregory TR (2012-09-06). "The ENCODE media hype machine". Genomicron. Arquivado dende o orixinal o 06 de abril de 2015. Consultado o 26 de febreiro de 2023.
Gregory TR (2013-04-11). "Critiques of ENCODE in peer-reviewed journals. « Genomicron". Genomicron. Arquivado dende o orixinal o 21 de abril de 2013.

factorbook.org

FactorBook

genome.gov

"The ENCODE Project: ENCyclopedia Of DNA Elements". www.genome.gov. Consultado o 2016-05-13.
"ENCODE Project". www.genome.gov. Arquivado dende o orixinal o 2016-05-17. Consultado o 2016-05-16.
ENCODE Program Staff (2012-10-18). "ENCODE: Pilot Project: overview". National Human Genome Research Institute.
ENCODE Program Staff (2012-02-19). "ENCODE: Pilot Project: Target Selection". National Human Genome Research Institute.
"Genome.gov | ENCODE and modENCODE Projects". The ENCODE Project: ENCyclopedia Of DNA Elements. United States National Human Genome Research Institute. 2011-08-01. Consultado o 2011-08-05.
"Genome.gov | ENCODE Participants and Projects". The ENCODE Project: ENCyclopedia Of DNA Elements. United States National Human Genome Research Institute. 2011-08-01. Consultado o 2011-08-05.
"The modENCODE Project: Model Organism ENCyclopedia Of DNA Elements (modENCODE)". sitio web do NHGRI. Consultado o 2008-11-13.
"modENCODE Participants and Projects". NHGRI website. Consultado o 2008-11-13.
"2015 Release: NIH grants aim to decipher the language of gene regulation". www.genome.gov. Arquivado dende o orixinal o 2016-04-06.

genomeinformatician.blogspot.com

Birney, Ewan (5 de setembro de 2012). "ENCODE: My own thoughts". Ewan's Blog: Bioinformatician at large.

harvard.edu

adsabs.harvard.edu

The ENCODE Project Consortium (2004). "The ENCODE (ENCyclopedia Of DNA Elements) Project". Science 306 (5696): 636–640. Bibcode:2004Sci...306..636E. PMID 15499007. doi:10.1126/science.1105136.
ENCODE Project Consortium, Birney E, Stamatoyannopoulos JA, Dutta A, Guigó R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET, et al. (2007). "Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project". Nature 447 (7146): 799–816. Bibcode:2007Natur.447..799B. PMC 2212820. PMID 17571346. doi:10.1038/nature05874.
Ecker JR, Bickmore WA, Barroso I, Pritchard JK, Gilad Y, Segal E (setembro de 2012). "Genomics: ENCODE explained". Nature 489 (7414): 52–5. Bibcode:2012Natur.489...52E. PMID 22955614. doi:10.1038/489052a.
Bernstein BE, Birney E, Dunham I, Green ED, Gunter C, Snyder M (setembro de 2012). "An integrated encyclopedia of DNA elements in the human genome". Nature 489 (7414): 57–74. Bibcode:2012Natur.489...57T. PMC 3439153. PMID 22955616. doi:10.1038/nature11247.
Thurman RE, Rynes E, Humbert R, Vierstra J, Maurano MT, Haugen E, Sheffield NC, Stergachis AB, Wang H, et al. (setembro de 2012). "The accessible chromatin landscape of the human genome". Nature 489 (7414): 75–82. Bibcode:2012Natur.489...75T. PMC 3721348. PMID 22955617. doi:10.1038/nature11232.
Neph S, Vierstra J, Stergachis AB, Reynolds AP, Haugen E, Vernot B, Thurman RE, John S, Sandstrom R, et al. (setembro de 2012). "An expansive human regulatory lexicon encoded in transcription factor footprints". Nature 489 (7414): 83–90. Bibcode:2012Natur.489...83N. PMC 3736582. PMID 22955618. doi:10.1038/nature11212.
Gerstein MB, Kundaje A, Hariharan M, Landt SG, Yan KK, Cheng C, Mu XJ, Khurana E, Rozowsky J, et al. (setembro de 2012). "Architecture of the human regulatory network derived from ENCODE data". Nature 489 (7414): 91–100. Bibcode:2012Natur.489...91G. PMC 4154057. PMID 22955619. doi:10.1038/nature11245.
Djebali S, Davis CA, Merkel A, Dobin A, Lassmann T, Mortazavi A, Tanzer A, Lagarde J, Lin W, et al. (setembro de 2012). "Landscape of transcription in human cells". Nature 489 (7414): 101–8. Bibcode:2012Natur.489..101D. PMC 3684276. PMID 22955620. doi:10.1038/nature11233.
Gerstein MB, Lu ZJ, Van Nostrand EL, Cheng C, Arshinoff BI, Liu T, Yip KY, Robilotto R, Rechtsteiner A, et al. (2010). "Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project". Science 330 (6012): 1775–1787. Bibcode:2010Sci...330.1775G. PMC 3142569. PMID 21177976. doi:10.1126/science.1196914.
modENCODE Consortium, Roy S, Ernst J, Kharchenko PV, Kheradpour P, Negre N, Eaton ML, Landolin JM, Bristow CA, Ma L, et al. (2010). "Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE". Science 330 (6012): 1787–1797. Bibcode:2010Sci...330.1787R. PMC 3192495. PMID 21177974. doi:10.1126/science.1198374.
Celniker S (2009-06-11). "Unlocking the secrets of the genome". Nature 459 (7249): 927–930. Bibcode:2009Natur.459..927C. PMC 2843545. PMID 19536255. doi:10.1038/459927a.
Kundaje, Anshul; Meuleman, Wouter; Ernst, Jason; Bilenky, Misha; Yen, Angela; Heravi-Moussavi, Alireza; Kheradpour, Pouya; Zhang, Zhizhuo; Wang, Jianrong; Ziller, Michael J.; Amin, Viren; Whitaker, John W.; Schultz, Matthew D.; Ward, Lucas D.; Sarkar, Abhishek; Quon, Gerald; Sandstrom, Richard S.; Eaton, Matthew L.; Wu, Yi-Chieh; Pfenning, Andreas R.; Wang, Xinchen; Claussnitzer, Melina; Liu, Yaping; Coarfa, Cristian; Harris, R. Alan; Shoresh, Noam; Epstein, Charles B.; Gjoneska, Elizabeta; Leung, Danny; et al. (2015). "Integrative analysis of 111 reference human epigenomes". Nature 518 (7539): 317–330. Bibcode:2015Natur.518..317.. PMC 4530010. PMID 25693563. doi:10.1038/nature14248.
White MA, Myers CA, Corbo JC, Cohen BA (xullo de 2013). "Massively parallel in vivo enhancer assay reveals that highly local features determine the cis-regulatory function of ChIP-seq peaks". Proc. Natl. Acad. Sci. U.S.A. 110 (29): 11952–7. Bibcode:2013PNAS..11011952W. PMC 3718143. PMID 23818646. doi:10.1073/pnas.1307449110.
- Mike White (17 de xullo de 2013). "Finding function in the genome with a null hypothesis". The Finch & Pea.
- Kellis M, et al. (2014). "Defining functional DNA elements in the human genome". Proc. Natl. Acad. Sci. U.S.A. 111 (17): 6131–8. Bibcode:2014PNAS..111.6131K. PMC 4035993. PMID 24753594. doi:10.1073/pnas.1318948111.

ihec-epigenomes.org

GmbH, Eurice. "United States of America · IHEC". ihec-epigenomes.org (en inglés). Consultado o 2017-07-18.

lbl.gov

"Berkeley Lab Life Sciences Awarded NIH Grants for Fruit Fly, Nematode Studies". Lawrence Berkeley National Laboratory website. 2007-05-14. Arquivado dende o orixinal o 21 de setembro de 2008. Consultado o 2008-11-13.

mendelspod.com

Timpson T (2013-03-05). "Debating ENCODE: Dan Graur, Michael Eisen". Mendelspod. Arquivado dende o orixinal o 11 de abril de 2015. Consultado o 26 de febreiro de 2023.

modencode.org

"modENCODE". The National Human Genome Research Institute. Arquivado dende o orixinal o 27 de decembro de 2010. Consultado o 26 de febreiro de 2023.

nature.com

"Fig. 3: Publications using ENCODE data. | Nature". Natureevents Directory (en inglés). ISSN 1476-4687.

blogs.nature.com

Maher B (2012-09-06). "Fighting about ENCODE and junk". News Blog. Nature Publishing Group. Arquivado dende o orixinal o 06 de agosto de 2013. Consultado o 26 de febreiro de 2023.

nih.gov

ncbi.nlm.nih.gov

Hong EL, Sloan CA, Chan ET, Davidson JM, Malladi VS, Strattan JS, Hitz BC, Gabdank I, Narayanan AK, Ho M, Lee BT, Rowe LD, Dreszer TR, Roe GR, Podduturi NR, Tanaka F, Hilton JA, Cherry JM (xaneiro de 2016). "Principles of metadata organization at the ENCODE data coordination center. (2016 update)". Database 2016: baw001. PMC 4792520. PMID 26980513. doi:10.1093/database/baw001.
Raney BJ, Cline MS, Rosenbloom KR, Dreszer TR, Learned K, Barber GP, Meyer LR, Sloan CA, Malladi VS, Roskin KM, Suh BB, Hinrichs AS, Clawson H, Zweig AS, Kirkup V, Fujita PA, Rhead B, Smith KE, Pohl A, Kuhn RM, Karolchik D, Haussler D, Kent WJ (xaneiro de 2011). "ENCODE whole-genome data in the UCSC genome browser (2011 update)". Nucleic Acids Res. 39 (Database issue): D871–5. PMC 3013645. PMID 21037257. doi:10.1093/nar/gkq1017.
The ENCODE Project Consortium (2004). "The ENCODE (ENCyclopedia Of DNA Elements) Project". Science 306 (5696): 636–640. Bibcode:2004Sci...306..636E. PMID 15499007. doi:10.1126/science.1105136.
ENCODE Project Consortium (2011). Becker PB, ed. "A User's Guide to the Encyclopedia of DNA Elements (ENCODE)". PLOS Biology 9 (4): e1001046. PMC 3079585. PMID 21526222. doi:10.1371/journal.pbio.1001046.
ENCODE Project Consortium, Birney E, Stamatoyannopoulos JA, Dutta A, Guigó R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET, et al. (2007). "Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project". Nature 447 (7146): 799–816. Bibcode:2007Natur.447..799B. PMC 2212820. PMID 17571346. doi:10.1038/nature05874.
Guigó R, Flicek P, Abril JF, Reymond A, Lagarde J, Denoeud F, Antonarakis S, Ashburner M, Bajic VB, Birney E, Castelo R, Eyras E, Ucla C, Gingeras TR, Harrow J, Hubbard T, Lewis SE, Reese MG (2006). "EGASP: The human ENCODE Genome Annotation Assessment Project". Genome Biology 7 (Suppl 1): S2.1–31. PMC 1810551. PMID 16925836. doi:10.1186/gb-2006-7-s1-s2.
Davis, Carrie A.; Hitz, Benjamin C.; Sloan, Cricket A.; Chan, Esther T.; Davidson, Jean M.; Gabdank, Idan; Hilton, Jason A.; Jain, Kriti; Baymuradov, Ulugbek K.; Narayanan, Aditi K.; Onate, Kathrina C. (2018-01-04). "The Encyclopedia of DNA elements (ENCODE): data portal update". Nucleic Acids Research 46 (D1): D794–D801. ISSN 1362-4962. PMC 5753278. PMID 29126249. doi:10.1093/nar/gkx1081.
Weinstock GM (2007). "ENCODE: More genomic empowerment". Genome Research 17 (6): 667–668. PMID 17567987. doi:10.1101/gr.6534207.
Ecker JR, Bickmore WA, Barroso I, Pritchard JK, Gilad Y, Segal E (setembro de 2012). "Genomics: ENCODE explained". Nature 489 (7414): 52–5. Bibcode:2012Natur.489...52E. PMID 22955614. doi:10.1038/489052a.
Bernstein BE, Birney E, Dunham I, Green ED, Gunter C, Snyder M (setembro de 2012). "An integrated encyclopedia of DNA elements in the human genome". Nature 489 (7414): 57–74. Bibcode:2012Natur.489...57T. PMC 3439153. PMID 22955616. doi:10.1038/nature11247.
Thurman RE, Rynes E, Humbert R, Vierstra J, Maurano MT, Haugen E, Sheffield NC, Stergachis AB, Wang H, et al. (setembro de 2012). "The accessible chromatin landscape of the human genome". Nature 489 (7414): 75–82. Bibcode:2012Natur.489...75T. PMC 3721348. PMID 22955617. doi:10.1038/nature11232.
Neph S, Vierstra J, Stergachis AB, Reynolds AP, Haugen E, Vernot B, Thurman RE, John S, Sandstrom R, et al. (setembro de 2012). "An expansive human regulatory lexicon encoded in transcription factor footprints". Nature 489 (7414): 83–90. Bibcode:2012Natur.489...83N. PMC 3736582. PMID 22955618. doi:10.1038/nature11212.
Gerstein MB, Kundaje A, Hariharan M, Landt SG, Yan KK, Cheng C, Mu XJ, Khurana E, Rozowsky J, et al. (setembro de 2012). "Architecture of the human regulatory network derived from ENCODE data". Nature 489 (7414): 91–100. Bibcode:2012Natur.489...91G. PMC 4154057. PMID 22955619. doi:10.1038/nature11245.
Djebali S, Davis CA, Merkel A, Dobin A, Lassmann T, Mortazavi A, Tanzer A, Lagarde J, Lin W, et al. (setembro de 2012). "Landscape of transcription in human cells". Nature 489 (7414): 101–8. Bibcode:2012Natur.489..101D. PMC 3684276. PMID 22955620. doi:10.1038/nature11233.
Malladi VS, Erickson DT, Podduturi NR, Rowe LD, Chan ET, Davidson JM, Hitz BC, Ho M, Lee BT, Miyasato S, Roe GR, Simison M, Sloan CA, Strattan JS, Tanaka F, Kent WJ, Cherry JM, Hong EL (2015). "Ontology application and use at the ENCODE DCC". Database (Oxford) 2015. PMC 4360730. PMID 25776021. doi:10.1093/database/bav010.
Brian J. Raney; et al. (2010-10-30). "ENCODE whole-genome data in the UCSC genome browser (2011 update)". Nucleic Acids Res. (Nucleic Acids Research) 39 (Database issue): D871–5. PMC 3013645. PMID 21037257. doi:10.1093/nar/gkq1017.
Gerstein MB, Lu ZJ, Van Nostrand EL, Cheng C, Arshinoff BI, Liu T, Yip KY, Robilotto R, Rechtsteiner A, et al. (2010). "Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project". Science 330 (6012): 1775–1787. Bibcode:2010Sci...330.1775G. PMC 3142569. PMID 21177976. doi:10.1126/science.1196914.
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