References analysis of the Wikipedia article "Pseudoxene" in the Galician version

doi.org

dx.doi.org

Vanin EF (1985). "Processed pseudogenes: characteristics and evolution". Annu. Rev. Genet. 19: 253–72. PMID 3909943. doi:10.1146/annurev.ge.19.120185.001345.

Jacq C, Miller JR, Brownlee GG (1977). "A pseudogene structure in 5S DNA of Xenopus laevis". Cell 12 (1): 109–20. PMID 561661. doi:10.1016/0092-8674(77)90189-1.

Zheng D, Frankish A, Baertsch R, Kapranov P, Reymond A, Choo SW, Lu Y, Denoeud F, Antonarakis SE, Snyder M, Ruan Y, Wei CL, Gingeras TR, Guigó R, Harrow J, Gerstein MB (2007). "Pseudogenes in the ENCODE regions: Consensus annotation, analysis of transcription, and evolution". Genome Res. 17 (6): 839–51. PMC 1891343. PMID 17568002. doi:10.1101/gr.5586307.

Mighell AJ, Smith NR, Robinson PA, Markham AF (2000). "Vertebrate pseudogenes". FEBS Lett. 468 (2–3): 109–14. PMID 10692568. doi:10.1016/S0014-5793(00)01199-6.

Jurka J (2004). "Evolutionary impact of human Alu repetitive elements". Curr. Opin. Genet. Dev. 14 (6): 603–8. PMID 15531153. doi:10.1016/j.gde.2004.08.008.

Dewannieux M, Heidmann T (2005). "LINEs, SINEs and processed pseudogenes: parasitic strategies for genome modeling". Cytogenet. Genome Res. 110 (1–4): 35–48. PMID 16093656. doi:10.1159/000084936.

Dewannieux M, Esnault C, Heidmann T (2003). "LINE-mediated retrotransposition of marked Alu sequences". Nat. Genet. 35 (1): 41–8. PMID 12897783. doi:10.1038/ng1223.

Graur D, Shuali Y, Li WH (1989). "Deletions in processed pseudogenes accumulate faster in rodents than in humans". J. Mol. Evol. 28 (4): 279–85. PMID 2499684. doi:10.1007/BF02103423.

Baertsch R, Diekhans M, Kent J, Haussler D, Brosius J (2008). "Retrocopy contributions to the evolution of the human genome". BMC Genomics 9: 446–54. PMC 2584115. PMID 18842134. doi:10.1186/1471-2164-9-466.

Pavlícek A, Paces J, Zíka R, Hejnar J (2002). "Length distribution of long interspersed nucleotide elements (LINEs) and processed pseudogenes of human endogenous retroviruses: implications for retrotransposition and pseudogene detection". Gene 300 (1–2): 189–94. PMID 12468100. doi:10.1016/S0378-1119(02)01047-8.

Harrison PM, Hegyi H, Balasubramanian S, Luscombe NM, Bertone P, Echols N, Johnson T, Gerstein M (2002). "Molecular fossils in the human genome: identification and analysis of the pseudogenes in chromosomes 21 and 22". Genome Res. 12 (2): 272–80. PMC 155275. PMID 11827946. doi:10.1101/gr.207102.

Zhang J (2003). "Evolution by gene duplication: an update.". Trends in Ecology and Evolution 18 (6): 292–298. doi:10.1016/S0169-5347(03)00033-8.

Xue Y, Daly A, Yngvadottir B, Liu M, Coop G, Kim Y, Sabeti P, Chen Y, Stalker J, Huckle E, Burton J, Leonard S, Rogers J, Tyler-Smith C (2006). "Spread of an Inactive Form of Caspase-12 in Humans Is Due to Recent Positive Selection". Am. J. Hum. Genet. 78 (4): 659–70. PMC 1424700. PMID 16532395. doi:10.1086/503116.

van Baren MJ, Brent MR (2006). "Iterative gene prediction and pseudogene removal improves genome annotation". Genome Res. 16 (5): 678–85. PMC 1457044. PMID 16651666. doi:10.1101/gr.4766206.

Harrison PM, Milburn D, Zhang Z, Bertone P, Gerstein M (2003). "Identification of pseudogenes in the Drosophila melanogaster genome". Nucleic Acids Res. 31 (3): 1033–7. PMC 149191. PMID 12560500. doi:10.1093/nar/gkg169.

Long M, Langley CH (1993). "Natural selection and the origin of jingwei, a chimeric processed functional gene in Drosophila". Science 260 (5104): 91–5. PMID 7682012. doi:10.1126/science.7682012.

Hirotsune S, Yoshida N, Chen A, Garrett L, Sugiyama F, Takahashi S, Yagami K, Wynshaw-Boris A, Yoshiki A (2003). "An expressed pseudogene regulates the messenger-RNA stability of its homologous coding gene". Nature 423 (6935): 91–6. PMID 12721631. doi:10.1038/nature01535.

Svensson O, Arvestad L, Lagergren J (2006). "Genome-Wide Survey for Biologically Functional Pseudogenes". PLoS Comput. Biol. 2 (5): e46. PMC 1456316. PMID 16680195. doi:10.1371/journal.pcbi.0020046.

Balakirev ES, Ayala FJ (2003). "Pseudogenes: are they "junk" or functional DNA?". Annu. Rev. Genet. 37: 123–51. PMID 14616058. doi:10.1146/annurev.genet.37.040103.103949.

Hirotsune S, Yoshida N, Chen A, Garrett L, Sugiyama F, Takahashi S, Yagami K, Wynshaw-Boris A, Yoshiki A (2003). "Addendum: An Expressed Pseudogene Regulates the messenger-RNA Stability of Its Homologous Coding Gene". Nature 426 (6962): 100. Bibcode:2003Natur.426..100H. PMID 14603326. doi:10.1038/nature02094.

Gray TA, Wilson A, Fortin PJ, Nicholls RD (2006). "The putatively functional Mkrn1-p1 pseudogene is neither expressed nor imprinted, nor does it regulate its source gene in trans". Proc. Natl. Acad. Sci. U.S.A. 103 (32): 12039–44. PMC 1567693. PMID 16882727. doi:10.1073/pnas.0602216103.

Tam OH, Aravin AA, Stein P, Girard A, Murchison EP, Cheloufi S, Hodges E, Anger M, Sachidanandam R, Schultz RM, Hannon GJ (2008). "Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes". Nature 453 (7194): 534–8. PMC 2981145. PMID 18404147. doi:10.1038/nature06904.

Watanabe T, Totoki Y, Toyoda A, Kaneda M, Kuramochi-Miyagawa S, Obata Y, Chiba H, Kohara Y, Kono T, Nakano T, Surani MA, Sakaki Y, Sasaki H (2008). "Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes". Nature 453 (7194): 539–43. PMID 18404146. doi:10.1038/nature06908.

Poliseno, L, Salmena L, Zhang J, Carver B, Haveman WJ, Pandolfi PP (2010). "A coding-independent function of gene and pseudogene mRNAs regulates tumour biology". Nature 465 (7301): 1033–8. PMID 20577206. doi:10.1038/nature09144.

Sassi SO, Braun EL, Benner SA (2007). "The evolution of seminal ribonuclease: pseudogene reactivation or multiple gene inactivation events?". Mol. Biol. Evol. 24 (4): 1012–24. PMID 17267422. doi:10.1093/molbev/msm020.

Sharon D, Glusman G, Pilpel Y, Khen M, Gruetzner F, Haaf T, Lancet D (1999). "Primate evolution of an olfactory receptor cluster: diversification by gene conversion and recent emergence of pseudogenes". Genomics 61 (1): 24–36. PMID 10512677. doi:10.1006/geno.1999.5900.

Fu LM, Shinnick TM (2007). "Genome-wide analysis of intergenic regions of Mycobacterium tuberculosis H37Rv using Affymetrix GeneChips". EURASIP J Bioinform Syst Biol: 23054. PMC 3171331. PMID 18253472. doi:10.1155/2007/23054.

Rozowsky JS, Newburger D, Sayward F, Wu J, Jordan G, Korbel JO, Nagalakshmi U, Yang J, Zheng D, Guigó R, Gingeras TR, Weissman S, Miller P, Snyder M, Gerstein MB (2007). "The DART classification of unannotated transcription within the ENCODE regions: associating transcription with known and novel loci". Genome Res. 17 (6): 732–45. PMC 1891334. PMID 17567993. doi:10.1101/gr.5696007.

harvard.edu

adsabs.harvard.edu

nih.gov

ncbi.nlm.nih.gov

Vanin EF (1985). "Processed pseudogenes: characteristics and evolution". Annu. Rev. Genet. 19: 253–72. PMID 3909943. doi:10.1146/annurev.ge.19.120185.001345.

Jacq C, Miller JR, Brownlee GG (1977). "A pseudogene structure in 5S DNA of Xenopus laevis". Cell 12 (1): 109–20. PMID 561661. doi:10.1016/0092-8674(77)90189-1.

Mighell AJ, Smith NR, Robinson PA, Markham AF (2000). "Vertebrate pseudogenes". FEBS Lett. 468 (2–3): 109–14. PMID 10692568. doi:10.1016/S0014-5793(00)01199-6.

Jurka J (2004). "Evolutionary impact of human Alu repetitive elements". Curr. Opin. Genet. Dev. 14 (6): 603–8. PMID 15531153. doi:10.1016/j.gde.2004.08.008.

Dewannieux M, Esnault C, Heidmann T (2003). "LINE-mediated retrotransposition of marked Alu sequences". Nat. Genet. 35 (1): 41–8. PMID 12897783. doi:10.1038/ng1223.

Graur D, Shuali Y, Li WH (1989). "Deletions in processed pseudogenes accumulate faster in rodents than in humans". J. Mol. Evol. 28 (4): 279–85. PMID 2499684. doi:10.1007/BF02103423.

Lynch M, Conery JS (2000). "The evolutionary fate and consequences of duplicate genes". Science 290 (5494): 1151–5. PMID 11073452.

Walsh JB (1995). "How often do duplicated genes evolve new functions?". Genetics 139 (1): 421–8. PMC 1206338. PMID 7705642.

Lynch M, O'Hely M, Walsh B, Force A (2001). "The probability of preservation of a newly arisen gene duplicate". Genetics 159 (4): 1789–804. PMC 1461922. PMID 11779815.

Nishikimi M, Kawai T, Yagi K (1992). "Guinea pigs possess a highly mutated gene for L-gulono-gamma-lactone oxidase, the key enzyme for L-ascorbic acid biosynthesis missing in this species". J. Biol. Chem. 267 (30): 21967–72. PMID 1400507. Arquivado dende o orixinal o 11 de maio de 2009. Consultado o 21 de abril de 2012.

Nishikimi M, Fukuyama R, Minoshima S, Shimizu N, Yagi K (1994). "Cloning and chromosomal mapping of the human nonfunctional gene for L-gulono-gamma-lactone oxidase, the enzyme for L-ascorbic acid biosynthesis missing in man". J. Biol. Chem. 269 (18): 13685–8. PMID 8175804. Arquivado dende o orixinal o 11 de maio de 2009. Consultado o 21 de abril de 2012.

van Baren MJ, Brent MR (2006). "Iterative gene prediction and pseudogene removal improves genome annotation". Genome Res. 16 (5): 678–85. PMC 1457044. PMID 16651666. doi:10.1101/gr.4766206.

Balakirev ES, Ayala FJ (2003). "Pseudogenes: are they "junk" or functional DNA?". Annu. Rev. Genet. 37: 123–51. PMID 14616058. doi:10.1146/annurev.genet.37.040103.103949.

Betrán E, Wang W, Jin L, Long M (2002). "Evolution of the phosphoglycerate mutase processed gene in human and chimpanzee revealing the origin of a new primate gene". Mol. Biol. Evol. 19 (5): 654–63. PMID 11961099.
Betrán E, Wang W, Jin L, Long M (2002). "Evolution of the phosphoglycerate mutase processed gene in human and chimpanzee revealing the origin of a new primate gene". Mol. Biol. Evol. 19 (5): 654–63. PMID 11961099.

Koch AL (1972). "Enzyme evolution. I. The importance of untranslatable intermediates". Genetics 72 (2): 297–316. PMC 1212829. PMID 4567287.

Trabesinger-Ruef N, Jermann T, Zankel T, Durrant B, Frank G, Benner SA (1996). "Pseudogenes in ribonuclease evolution: a source of new biomacromolecular function?". FEBS Lett. 382 (3): 319–22. PMID 8605993.

Pâques F, Haber JE (1999). "Multiple pathways of recombination induced by double-strand breaks in Saccharomyces cerevisiae". Microbiol. Mol. Biol. Rev. 63 (2): 349–404. PMC 98970. PMID 10357855.

Scarpulla RC (1984). "Processed pseudogenes for rat cytochrome c are preferentially derived from one of three alternate mRNAs". Mol. Cell. Biol. 4 (11): 2279–88. PMC 369056. PMID 6096691.

Dudov KP, Perry RP (1984). "The gene family encoding the mouse ribosomal protein L32 contains a uniquely expressed intron-containing gene and an unmutated processed gene". Cell 37 (2): 457–68. PMID 6327068.

Gerstein M, Zheng D (2006). "The real life of pseudogenes". Sci. Am. 295 (2): 48–55. PMID 16866288.

Pseudoxene (Galician Wikipedia)

archive.org

biomedcentral.com

doi.org

dx.doi.org

harvard.edu

adsabs.harvard.edu

jbc.org

nih.gov

ncbi.nlm.nih.gov

oxfordjournals.org

mbe.oxfordjournals.org

talkorigins.org

web.archive.org