גילוי RNA לא מקודד בכלי ביואינפורמטיקה (Hebrew Wikipedia)

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doi.org

"Gapped BLAST and PSI-BLAST: a new generation of protein database search programs". Nucleic Acids Res. 25 (17): 3389–3402. בספטמבר 1997. doi:10.1093/nar/25.17.3389. PMC 146917. PMID 9254694. {{cite journal}}: (עזרה)
"RNA sequence analysis using covariance models". Nucleic Acids Res. 22 (11): 2079–2088. ביוני 1994. doi:10.1093/nar/22.11.2079. PMC 308124. PMID 8029015. {{cite journal}}: (עזרה)
"Infernal 1.1: 100-fold faster RNA homology searches". Bioinformatics. 29 (22): 2933–2935. בנובמבר 2013. doi:10.1093/bioinformatics/btt509. PMC 3810854. PMID 24008419. {{cite journal}}: (עזרה)
"tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence". Nucleic Acids Res. 25 (5): 955–964. במרץ 1997. doi:10.1093/nar/25.5.955. PMC 146525. PMID 9023104. {{cite journal}}: (עזרה)
"A computational screen for methylation guide snoRNAs in yeast". Science. 283 (5405): 1168–1171. בפברואר 1999. Bibcode:1999Sci...283.1168L. doi:10.1126/science.283.5405.1168. PMID 10024243. {{cite journal}}: (עזרה)
"SnoReport: computational identification of snoRNAs with unknown targets". Bioinformatics. 24 (2): 158–164. בינואר 2008. doi:10.1093/bioinformatics/btm464. PMID 17895272free {{cite journal}}: (עזרה)תחזוקה - ציטוט: postscript (link)
"A fast ab-initio method for predicting miRNA precursors in genomes". Nucleic Acids Res. 40 (11): 955–964. 2012. doi:10.1093/nar/gks146. PMC 3367186. PMID 22362754.
"miRNAminer: a tool for homologous microRNA gene search". BMC Bioinformatics. 9 (1): 39. 2008. doi:10.1186/1471-2105-9-39. PMC 2258288. PMID 18215311.
"Noncoding RNA gene detection using comparative sequence analysis". BMC Bioinformatics. 2: 8. 2001. doi:10.1186/1471-2105-2-8. PMC 64605. PMID 11801179.
"Finding non-coding RNAs through genome-scale clustering". J Bioinform Comput Biol. 7 (2): 373–388. באפריל 2009. doi:10.1142/s0219720009004126. PMC 3417115. PMID 19340921. {{cite journal}}: (עזרה)
"Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline". Nucleic Acids Res. 35 (14): 4809–4819. 2007. doi:10.1093/nar/gkm487. PMC 1950547. PMID 17621584.
"A plant 5S ribosomal RNA mimic regulates alternative splicing of transcription factor IIIA pre-mRNAs". Nat. Struct. Mol. Biol. 16 (5): 541–549. במאי 2009. doi:10.1038/nsmb.1588. PMC 2680232. PMID 19377483. {{cite journal}}: (עזרה)
"GraphClust: alignment-free structural clustering of local RNA secondary structures". Bioinformatics. 28 (12): i224–32. ביוני 2012. doi:10.1093/bioinformatics/bts224. PMC 3371856. PMID 22689765. {{cite journal}}: (עזרה)
"Identification and classification of conserved RNA secondary structures in the human genome". PLOS Comput. Biol. 2 (4): e33. באפריל 2006. Bibcode:2006PLSCB...2...33P. doi:10.1371/journal.pcbi.0020033. PMC 1440920. PMID 16628248. {{cite journal}}: (עזרה)
"Fast and reliable prediction of noncoding RNAs". Proc. Natl. Acad. Sci. U.S.A. 102 (7): 2454–2459. בפברואר 2005. doi:10.1073/pnas.0409169102. PMC 548974. PMID 15665081free {{cite journal}}: (עזרה)תחזוקה - ציטוט: postscript (link)
"Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes". Genome Biol. 11 (3): R31. 2010. doi:10.1186/gb-2010-11-3-r31. PMC 2864571. PMID 20230605.
"Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions". Nucleic Acids Res. 45 (18): 10811–10823. באוקטובר 2017. doi:10.1093/nar/gkx699. PMC 5737381. PMID 28977401. {{cite journal}}: (עזרה)

harvard.edu

ui.adsabs.harvard.edu

"A computational screen for methylation guide snoRNAs in yeast". Science. 283 (5405): 1168–1171. בפברואר 1999. Bibcode:1999Sci...283.1168L. doi:10.1126/science.283.5405.1168. PMID 10024243. {{cite journal}}: (עזרה)
"Identification and classification of conserved RNA secondary structures in the human genome". PLOS Comput. Biol. 2 (4): e33. באפריל 2006. Bibcode:2006PLSCB...2...33P. doi:10.1371/journal.pcbi.0020033. PMC 1440920. PMID 16628248. {{cite journal}}: (עזרה)

nih.gov

pubmed.ncbi.nlm.nih.gov

"Gapped BLAST and PSI-BLAST: a new generation of protein database search programs". Nucleic Acids Res. 25 (17): 3389–3402. בספטמבר 1997. doi:10.1093/nar/25.17.3389. PMC 146917. PMID 9254694. {{cite journal}}: (עזרה)
"RNA sequence analysis using covariance models". Nucleic Acids Res. 22 (11): 2079–2088. ביוני 1994. doi:10.1093/nar/22.11.2079. PMC 308124. PMID 8029015. {{cite journal}}: (עזרה)
"Infernal 1.1: 100-fold faster RNA homology searches". Bioinformatics. 29 (22): 2933–2935. בנובמבר 2013. doi:10.1093/bioinformatics/btt509. PMC 3810854. PMID 24008419. {{cite journal}}: (עזרה)
"tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence". Nucleic Acids Res. 25 (5): 955–964. במרץ 1997. doi:10.1093/nar/25.5.955. PMC 146525. PMID 9023104. {{cite journal}}: (עזרה)
"A computational screen for methylation guide snoRNAs in yeast". Science. 283 (5405): 1168–1171. בפברואר 1999. Bibcode:1999Sci...283.1168L. doi:10.1126/science.283.5405.1168. PMID 10024243. {{cite journal}}: (עזרה)
"SnoReport: computational identification of snoRNAs with unknown targets". Bioinformatics. 24 (2): 158–164. בינואר 2008. doi:10.1093/bioinformatics/btm464. PMID 17895272free {{cite journal}}: (עזרה)תחזוקה - ציטוט: postscript (link)
"A fast ab-initio method for predicting miRNA precursors in genomes". Nucleic Acids Res. 40 (11): 955–964. 2012. doi:10.1093/nar/gks146. PMC 3367186. PMID 22362754.
"miRNAminer: a tool for homologous microRNA gene search". BMC Bioinformatics. 9 (1): 39. 2008. doi:10.1186/1471-2105-9-39. PMC 2258288. PMID 18215311.
"Noncoding RNA gene detection using comparative sequence analysis". BMC Bioinformatics. 2: 8. 2001. doi:10.1186/1471-2105-2-8. PMC 64605. PMID 11801179.
"Finding non-coding RNAs through genome-scale clustering". J Bioinform Comput Biol. 7 (2): 373–388. באפריל 2009. doi:10.1142/s0219720009004126. PMC 3417115. PMID 19340921. {{cite journal}}: (עזרה)
"Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline". Nucleic Acids Res. 35 (14): 4809–4819. 2007. doi:10.1093/nar/gkm487. PMC 1950547. PMID 17621584.
"A plant 5S ribosomal RNA mimic regulates alternative splicing of transcription factor IIIA pre-mRNAs". Nat. Struct. Mol. Biol. 16 (5): 541–549. במאי 2009. doi:10.1038/nsmb.1588. PMC 2680232. PMID 19377483. {{cite journal}}: (עזרה)
"GraphClust: alignment-free structural clustering of local RNA secondary structures". Bioinformatics. 28 (12): i224–32. ביוני 2012. doi:10.1093/bioinformatics/bts224. PMC 3371856. PMID 22689765. {{cite journal}}: (עזרה)
"Identification and classification of conserved RNA secondary structures in the human genome". PLOS Comput. Biol. 2 (4): e33. באפריל 2006. Bibcode:2006PLSCB...2...33P. doi:10.1371/journal.pcbi.0020033. PMC 1440920. PMID 16628248. {{cite journal}}: (עזרה)
"Fast and reliable prediction of noncoding RNAs". Proc. Natl. Acad. Sci. U.S.A. 102 (7): 2454–2459. בפברואר 2005. doi:10.1073/pnas.0409169102. PMC 548974. PMID 15665081free {{cite journal}}: (עזרה)תחזוקה - ציטוט: postscript (link)
"Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes". Genome Biol. 11 (3): R31. 2010. doi:10.1186/gb-2010-11-3-r31. PMC 2864571. PMID 20230605.
"Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions". Nucleic Acids Res. 45 (18): 10811–10823. באוקטובר 2017. doi:10.1093/nar/gkx699. PMC 5737381. PMID 28977401. {{cite journal}}: (עזרה)

ncbi.nlm.nih.gov

"Gapped BLAST and PSI-BLAST: a new generation of protein database search programs". Nucleic Acids Res. 25 (17): 3389–3402. בספטמבר 1997. doi:10.1093/nar/25.17.3389. PMC 146917. PMID 9254694. {{cite journal}}: (עזרה)
"RNA sequence analysis using covariance models". Nucleic Acids Res. 22 (11): 2079–2088. ביוני 1994. doi:10.1093/nar/22.11.2079. PMC 308124. PMID 8029015. {{cite journal}}: (עזרה)
"Infernal 1.1: 100-fold faster RNA homology searches". Bioinformatics. 29 (22): 2933–2935. בנובמבר 2013. doi:10.1093/bioinformatics/btt509. PMC 3810854. PMID 24008419. {{cite journal}}: (עזרה)
"tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence". Nucleic Acids Res. 25 (5): 955–964. במרץ 1997. doi:10.1093/nar/25.5.955. PMC 146525. PMID 9023104. {{cite journal}}: (עזרה)
"A fast ab-initio method for predicting miRNA precursors in genomes". Nucleic Acids Res. 40 (11): 955–964. 2012. doi:10.1093/nar/gks146. PMC 3367186. PMID 22362754.
"miRNAminer: a tool for homologous microRNA gene search". BMC Bioinformatics. 9 (1): 39. 2008. doi:10.1186/1471-2105-9-39. PMC 2258288. PMID 18215311.
"Noncoding RNA gene detection using comparative sequence analysis". BMC Bioinformatics. 2: 8. 2001. doi:10.1186/1471-2105-2-8. PMC 64605. PMID 11801179.
"Finding non-coding RNAs through genome-scale clustering". J Bioinform Comput Biol. 7 (2): 373–388. באפריל 2009. doi:10.1142/s0219720009004126. PMC 3417115. PMID 19340921. {{cite journal}}: (עזרה)
"Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline". Nucleic Acids Res. 35 (14): 4809–4819. 2007. doi:10.1093/nar/gkm487. PMC 1950547. PMID 17621584.
"A plant 5S ribosomal RNA mimic regulates alternative splicing of transcription factor IIIA pre-mRNAs". Nat. Struct. Mol. Biol. 16 (5): 541–549. במאי 2009. doi:10.1038/nsmb.1588. PMC 2680232. PMID 19377483. {{cite journal}}: (עזרה)
"GraphClust: alignment-free structural clustering of local RNA secondary structures". Bioinformatics. 28 (12): i224–32. ביוני 2012. doi:10.1093/bioinformatics/bts224. PMC 3371856. PMID 22689765. {{cite journal}}: (עזרה)
"Identification and classification of conserved RNA secondary structures in the human genome". PLOS Comput. Biol. 2 (4): e33. באפריל 2006. Bibcode:2006PLSCB...2...33P. doi:10.1371/journal.pcbi.0020033. PMC 1440920. PMID 16628248. {{cite journal}}: (עזרה)
"Fast and reliable prediction of noncoding RNAs". Proc. Natl. Acad. Sci. U.S.A. 102 (7): 2454–2459. בפברואר 2005. doi:10.1073/pnas.0409169102. PMC 548974. PMID 15665081free {{cite journal}}: (עזרה)תחזוקה - ציטוט: postscript (link)
"Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes". Genome Biol. 11 (3): R31. 2010. doi:10.1186/gb-2010-11-3-r31. PMC 2864571. PMID 20230605.
"Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions". Nucleic Acids Res. 45 (18): 10811–10823. באוקטובר 2017. doi:10.1093/nar/gkx699. PMC 5737381. PMID 28977401. {{cite journal}}: (עזרה)