Ben-Dor, A.; Shamir, R.; Yakhini, Z. (1999), "Clustering gene expression patterns", Journal of Computational Biology, 6 (3–4): 281–297, doi:10.1089/106652799318274, PMID10582567
Sharan, R.; Maron-Katz, A.; Shamir, R. (2000), "CLICK: A Clustering Algorithm with Applications to Gene Expression Analysis", Intelligent Systems in Molecular Biology - ISMB, 19 (14): 307–316, doi:10.1093/bioinformatics/btg232, PMID14512350.
Sharan, R.; Maron-Katz, A.; Shamir, R. (2003), "CLICK and EXPANDER: a system for clustering and visualizing gene expression data", Bioinformatics, 19 (14): 1787–1799, doi:10.1093/bioinformatics/btg232, PMID14512350
Adler, Ilan; Karp, Richard M.; Shamir, Ron (1987), "A simplex variant solving an m × d linear program in O(min(m^2, d^2)) expected number of pivot steps", Journal of Complexity, 3 (4): 372–387, doi:10.1016/0885-064X(87)90007-0
Hochbaum, Dorit S.; Shamir, Ron (1991). "Strongly Polynomial Algorithms for the High Multiplicity Scheduling Problem". Operations Research. 39 (4): 648–653. doi:10.1287/opre.39.4.648. ISSN0030-364X.
Golumbic, Martin Charles; Kaplan, Haim; Shamir, Ron (1995), "Graph Sandwich Problems", Journal of Algorithms, 19 (3): 449–473, doi:10.1006/jagm.1995.1047
Kaplan, Haim; Shamir, Ron (1996), "Pathwidth, Bandwidth, and Completion Problems to Proper Interval Graphs with Small Cliques", SIAM Journal on Computing, 25 (3): 540–561, doi:10.1137/S0097539793258143
Kaplan, Haim; Shamir, Ron; Tarjan, Robert E. (1999), "Tractability of Parameterized Completion Problems on Chordal, Strongly Chordal, and Proper Interval Graphs", SIAM Journal on Computing, 28 (5): 1906–1922, doi:10.1137/S0097539796303044
Golumbic, M.C.; Kaplan, H.; Shamir, R. (1994), "On the Complexity of DNA Physical Mapping", Advances in Applied Mathematics, 15 (3): 251–261, doi:10.1006/aama.1994.1009
Hartuv, E.; Shamir, R. (2000), "A clustering algorithm based on graph connectivity", Information Processing Letters, 76 (4–6): 175–181, doi:10.1016/S0020-0190(00)00142-3
Ulitsky, I.; Shamir, R. (2007), "Identification of functional modules using network topology and high-throughput data", BMC Systems Biology, 1 (8): 8, doi:10.1186/1752-0509-1-8, PMC1839897, PMID17408515
Kaplan, H.; Shamir, R.; Tarjan, R.E. (1999), "A Faster and Simpler Algorithm for Sorting Signed Permutations by Reversals", SIAM Journal on Computing, 29 (3): 880–892, doi:10.1137/s0097539798334207
Elkon, R.; Linhart, C.; Sharan, R.; Shamir, R.; Shiloh, Y. (2003), "Genome-Wide In Silico Identification of Transcriptional Regulators Controlling the Cell Cycle in Human Cells", Genome Research, 13 (5): 773–780, doi:10.1101/gr.947203, PMC430898, PMID12727897
Linhart, C.; Halperin, Y.; Shamir, R. (2008), "Transcription factor and microRNA motif discovery: The Amadeus platform and a compendium of metazoan target sets", Genome Research, 18 (7): 1180–1189, doi:10.1101/gr.076117.108, PMC2493407, PMID18411406
Tanay, A.; Regev, A.; Shamir, R. (2005), "Conservation and evolvability in regulatory networks: The evolution of ribosomal regulation in yeast", Proceedings of the National Academy of Sciences USA, 102 (20): 7203–7208, Bibcode:2005PNAS..102.7203T, doi:10.1073/pnas.0502521102, PMC1091753, PMID15883364
Sharan, Roded; Ideker, Trey; Kelley, Brian; Shamir, Ron; Karp, Richard M. (ביולי 2005). "Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data". Journal of Computational Biology. 12 (6): 835–846. doi:10.1089/cmb.2005.12.835. ISSN1066-5277. PMID16108720. {{cite journal}}: (עזרה)
Tanay, A.; Regev, A.; Shamir, R. (2005), "Conservation and evolvability in regulatory networks: The evolution of ribosomal regulation in yeast", Proceedings of the National Academy of Sciences USA, 102 (20): 7203–7208, Bibcode:2005PNAS..102.7203T, doi:10.1073/pnas.0502521102, PMC1091753, PMID15883364
Ben-Dor, A.; Shamir, R.; Yakhini, Z. (1999), "Clustering gene expression patterns", Journal of Computational Biology, 6 (3–4): 281–297, doi:10.1089/106652799318274, PMID10582567
Sharan, R.; Maron-Katz, A.; Shamir, R. (2000), "CLICK: A Clustering Algorithm with Applications to Gene Expression Analysis", Intelligent Systems in Molecular Biology - ISMB, 19 (14): 307–316, doi:10.1093/bioinformatics/btg232, PMID14512350.
Sharan, R.; Maron-Katz, A.; Shamir, R. (2003), "CLICK and EXPANDER: a system for clustering and visualizing gene expression data", Bioinformatics, 19 (14): 1787–1799, doi:10.1093/bioinformatics/btg232, PMID14512350
Ulitsky, I.; Shamir, R. (2007), "Identification of functional modules using network topology and high-throughput data", BMC Systems Biology, 1 (8): 8, doi:10.1186/1752-0509-1-8, PMC1839897, PMID17408515
Elkon, R.; Linhart, C.; Sharan, R.; Shamir, R.; Shiloh, Y. (2003), "Genome-Wide In Silico Identification of Transcriptional Regulators Controlling the Cell Cycle in Human Cells", Genome Research, 13 (5): 773–780, doi:10.1101/gr.947203, PMC430898, PMID12727897
Linhart, C.; Halperin, Y.; Shamir, R. (2008), "Transcription factor and microRNA motif discovery: The Amadeus platform and a compendium of metazoan target sets", Genome Research, 18 (7): 1180–1189, doi:10.1101/gr.076117.108, PMC2493407, PMID18411406
Tanay, A.; Regev, A.; Shamir, R. (2005), "Conservation and evolvability in regulatory networks: The evolution of ribosomal regulation in yeast", Proceedings of the National Academy of Sciences USA, 102 (20): 7203–7208, Bibcode:2005PNAS..102.7203T, doi:10.1073/pnas.0502521102, PMC1091753, PMID15883364
Sharan, Roded; Ideker, Trey; Kelley, Brian; Shamir, Ron; Karp, Richard M. (ביולי 2005). "Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data". Journal of Computational Biology. 12 (6): 835–846. doi:10.1089/cmb.2005.12.835. ISSN1066-5277. PMID16108720. {{cite journal}}: (עזרה)
ncbi.nlm.nih.gov
Ulitsky, I.; Shamir, R. (2007), "Identification of functional modules using network topology and high-throughput data", BMC Systems Biology, 1 (8): 8, doi:10.1186/1752-0509-1-8, PMC1839897, PMID17408515
Elkon, R.; Linhart, C.; Sharan, R.; Shamir, R.; Shiloh, Y. (2003), "Genome-Wide In Silico Identification of Transcriptional Regulators Controlling the Cell Cycle in Human Cells", Genome Research, 13 (5): 773–780, doi:10.1101/gr.947203, PMC430898, PMID12727897
Linhart, C.; Halperin, Y.; Shamir, R. (2008), "Transcription factor and microRNA motif discovery: The Amadeus platform and a compendium of metazoan target sets", Genome Research, 18 (7): 1180–1189, doi:10.1101/gr.076117.108, PMC2493407, PMID18411406
Tanay, A.; Regev, A.; Shamir, R. (2005), "Conservation and evolvability in regulatory networks: The evolution of ribosomal regulation in yeast", Proceedings of the National Academy of Sciences USA, 102 (20): 7203–7208, Bibcode:2005PNAS..102.7203T, doi:10.1073/pnas.0502521102, PMC1091753, PMID15883364
Hochbaum, Dorit S.; Shamir, Ron (1991). "Strongly Polynomial Algorithms for the High Multiplicity Scheduling Problem". Operations Research. 39 (4): 648–653. doi:10.1287/opre.39.4.648. ISSN0030-364X.
Sharan, Roded; Ideker, Trey; Kelley, Brian; Shamir, Ron; Karp, Richard M. (ביולי 2005). "Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data". Journal of Computational Biology. 12 (6): 835–846. doi:10.1089/cmb.2005.12.835. ISSN1066-5277. PMID16108720. {{cite journal}}: (עזרה)