Penapisan maya (Indonesian Wikipedia)

Analysis of information sources in references of the Wikipedia article "Penapisan maya" in Indonesian language version.

Last modified: 05:39:27, 14 August 2026 (UTC)

Ref.Un. Ref.Website

Global rank Indonesian rank

7469nih.gov

5^th place

6^th place

5451doi.org

2^nd place

1110adsabs.harvard.edu

14^th place

19^th place

87worldcat.org

4^th place

5^th place

66semanticscholar.org

15^th place

26^th place

65archive.org

6^th place

3^rd place

51ebi.ac.uk

4,422^nd place

4,044^th place

33psu.edu

299^th place

372^nd place

11arxiv.org

49^th place

117^th place

11tandfonline.com

286^th place

353^rd place

adsabs.harvard.edu (Global: 14^th place; Indonesian: 19^th place)

ui.adsabs.harvard.edu

Santana K, do Nascimento LD, Lima e Lima A, Damasceno V, Nahum C, Braga RC, Lameira J (2021-04-29). "Applications of Virtual Screening in Bioprospecting: Facts, Shifts, and Perspectives to Explore the Chemo-Structural Diversity of Natural Products". Frontiers in Chemistry. 9 662688. Bibcode:2021FrCh....9..155S. doi:10.3389/fchem.2021.662688. ISSN 2296-2646. PMC 8117418. PMID 33996755.
Kumar A, Zhang KY (2018). "Advances in the Development of Shape Similarity Methods and Their Application in Drug Discovery". Frontiers in Chemistry (dalam bahasa English). 6 315. Bibcode:2018FrCh....6..315K. doi:10.3389/fchem.2018.00315. PMC 6068280. PMID 30090808.{{cite journal}}: Pemeliharaan CS1: Bahasa yang tidak diketahui (link)
Maia EH, Assis LC, de Oliveira TA, da Silva AM, Taranto AG (2020-04-28). "Structure-Based Virtual Screening: From Classical to Artificial Intelligence". Frontiers in Chemistry. 8 343. Bibcode:2020FrCh....8..343M. doi:10.3389/fchem.2020.00343. PMC 7200080. PMID 32411671.
Kooistra AJ, Vischer HF, McNaught-Flores D, Leurs R, de Esch IJ, de Graaf C (Juni 2016). "Function-specific virtual screening for GPCR ligands using a combined scoring method". Scientific Reports. 6 28288. Bibcode:2016NatSR...628288K. doi:10.1038/srep28288. PMC 4919634. PMID 27339552.{{cite journal}}: Pemeliharaan CS1: Tanggal diterjemahkan otomatis (link)
Li H, Leung KS, Ballester PJ, Wong MH (2014-01-24). "istar: a web platform for large-scale protein-ligand docking". PLOS ONE. 9 (1) e85678. Bibcode:2014PLoSO...985678L. doi:10.1371/journal.pone.0085678. PMC 3901662. PMID 24475049.
Irwin JJ (2008). "Community benchmarks for virtual screening". Journal of Computer-Aided Molecular Design. 22 (3–4): 193–9. Bibcode:2008JCAMD..22..193I. doi:10.1007/s10822-008-9189-4. PMID 18273555. S2CID 26260725.
Good AC, Oprea TI (2008). "Optimization of CAMD techniques 3. Virtual screening enrichment studies: a help or hindrance in tool selection?". Journal of Computer-Aided Molecular Design. 22 (3–4): 169–78. Bibcode:2008JCAMD..22..169G. doi:10.1007/s10822-007-9167-2. PMID 18188508. S2CID 7738182.
Nicholls A, Grant JA (2005). "Molecular shape and electrostatics in the encoding of relevant chemical information". Journal of Computer-Aided Molecular Design. 19 (9–10): 661–686. Bibcode:2005JCAMD..19..661N. doi:10.1007/s10822-005-9019-x. PMID 16328855.
Tran, Que-Huong; Nguyen, Quoc-Thai; Vo, Nguyen-Quynh-Huong; Mai, Tan Thanh; Tran, Thi-Thuy-Nga; Tran, Thanh-Dao; Le, Minh-Tri; Trinh, Dieu-Thuong Thi; Thai, Khac-Minh (2022-04-06). "Structure-based 3D-Pharmacophore modeling to discover novel interleukin 6 inhibitors: An in silico screening, molecular dynamics simulations and binding free energy calculations". PLOS ONE (dalam bahasa Inggris). 17 (4) e0266632. Bibcode:2022PLoSO..1766632T. doi:10.1371/journal.pone.0266632. ISSN 1932-6203. PMC 8986010. PMID 35385549.
Le, M.-T.; Mai, T.T.; Huynh, P.N.H.; Tran, T.-D.; Thai, K.-M.; Nguyen, Q.-T. (2020-12-01). "Structure-based discovery of interleukin-33 inhibitors: a pharmacophore modelling, molecular docking, and molecular dynamics simulation approach". SAR and QSAR in Environmental Research (dalam bahasa Inggris). 31 (12): 883–904. Bibcode:2020SQER...31..883L. doi:10.1080/1062936X.2020.1837239. ISSN 1062-936X. PMID 33191795.

archive.org (Global: 6^th place; Indonesian: 3^rd place)

Bohacek RS, McMartin C, Guida WC (1996). "The art and practice of structure-based drug design: a molecular modeling perspective". Med. Res. Rev. 16 (1): 3–50. doi:10.1002/(SICI)1098-1128(199601)16:1<3::AID-MED1>3.0.CO;2-6. PMID 8788213.
McGregor MJ, Luo Z, Jiang X (Juni 11, 2007). "Chapter 3: Virtual screening in drug discovery". Dalam Huang Z (ed.). Drug Discovery Research. New Frontiers in the Post-Genomic Era. Wiley-VCH: Weinheim, Germany. hlm. 63–88. ISBN 978-0-471-67200-5.{{cite book}}: Pemeliharaan CS1: Tanggal diterjemahkan otomatis (link)
Kirchmair J, Distinto S, Markt P, Schuster D, Spitzer GM, Liedl KR, Wolber G (2009). "How To Optimize Shape-Based Virtual Screening: Choosing the Right Query and Including Chemical Information". Journal of Chemical Information and Modeling. 49 (3): 678–692. doi:10.1021/ci8004226. PMID 19434901.
Spitzer GM, Heiss M, Mangold M, Markt P, Kirchmair J, Wolber G, Liedl KR (2010). "One concept, three implementations of 3D pharmacophore-based virtual screening: distinct coverage of chemical search space". Journal of Chemical Information and Modeling. 50 (7): 1241–1247. doi:10.1021/ci100136b. PMID 20583761.
Grant JA, Gallard MA, Pickup BT (1996). "A fast method of molecular shape comparison: a simple application of a Gaussian description of molecular shape". Journal of Computational Chemistry. 17 (14): 1653–1666. doi:10.1002/(SICI)1096-987X(19961115)17:14<1653::AID-JCC7>3.0.CO;2-K.

arxiv.org (Global: 49^th place; Indonesian: 117^th place)

Wallach I, Heifets A (2018). "Most Ligand-based classification benchmarks reward memorization rather than generalization". Journal of Chemical Information and Modeling. 58 (5): 916–932. arXiv:1706.06619. doi:10.1021/acs.jcim.7b00403. PMID 29698607. S2CID 195345933.

doi.org (Global: 2^nd place; Indonesian: 2^nd place)

Rollinger JM, Stuppner H, Langer T (2008). "Virtual screening for the discovery of bioactive natural products". Natural Compounds as Drugs Volume I. Progress in Drug Research. Fortschritte der Arzneimittelforschung. Progrès des Recherches Pharmaceutiques. Vol. 65. hlm. 211, 213–49. doi:10.1007/978-3-7643-8117-2_6. ISBN 978-3-7643-8098-4. PMC 7124045. PMID 18084917.
Walters WP, Stahl MT, Murcko MA (1998). "Virtual screening – an overview". Drug Discov. Today. 3 (4): 160–178. doi:10.1016/S1359-6446(97)01163-X.
Bohacek RS, McMartin C, Guida WC (1996). "The art and practice of structure-based drug design: a molecular modeling perspective". Med. Res. Rev. 16 (1): 3–50. doi:10.1002/(SICI)1098-1128(199601)16:1<3::AID-MED1>3.0.CO;2-6. PMID 8788213.
McInnes C (Oktober 2007). "Virtual screening strategies in drug discovery". Current Opinion in Chemical Biology. 11 (5): 494–502. doi:10.1016/j.cbpa.2007.08.033. PMID 17936059.{{cite journal}}: Pemeliharaan CS1: Tanggal diterjemahkan otomatis (link)
Santana K, do Nascimento LD, Lima e Lima A, Damasceno V, Nahum C, Braga RC, Lameira J (2021-04-29). "Applications of Virtual Screening in Bioprospecting: Facts, Shifts, and Perspectives to Explore the Chemo-Structural Diversity of Natural Products". Frontiers in Chemistry. 9 662688. Bibcode:2021FrCh....9..155S. doi:10.3389/fchem.2021.662688. ISSN 2296-2646. PMC 8117418. PMID 33996755.
Sun H (2008). "Pharmacophore-based virtual screening". Current Medicinal Chemistry. 15 (10): 1018–24. doi:10.2174/092986708784049630. PMID 18393859.
Willet P, Barnard JM, Downs GM (1998). "Chemical similarity searching". Journal of Chemical Information and Computer Sciences. 38 (6): 983–996. CiteSeerX 10.1.1.453.1788. doi:10.1021/ci9800211. {{cite journal}}:
Rush TS, Grant JA, Mosyak L, Nicholls A (Maret 2005). "A shape-based 3-D scaffold hopping method and its application to a bacterial protein-protein interaction". Journal of Medicinal Chemistry. 48 (5): 1489–95. CiteSeerX 10.1.1.455.4728. doi:10.1021/jm040163o. PMID 15743191. {{cite journal}}: Pemeliharaan CS1: Tanggal diterjemahkan otomatis (link)
Ballester PJ, Westwood I, Laurieri N, Sim E, Richards WG (Februari 2010). "Prospective virtual screening with Ultrafast Shape Recognition: the identification of novel inhibitors of arylamine N-acetyltransferases". Journal of the Royal Society, Interface. 7 (43): 335–42. doi:10.1098/rsif.2009.0170. PMC 2842611. PMID 19586957.{{cite journal}}: Pemeliharaan CS1: Tanggal diterjemahkan otomatis (link)
Kumar A, Zhang KY (2018). "Advances in the Development of Shape Similarity Methods and Their Application in Drug Discovery". Frontiers in Chemistry (dalam bahasa English). 6 315. Bibcode:2018FrCh....6..315K. doi:10.3389/fchem.2018.00315. PMC 6068280. PMID 30090808.{{cite journal}}: Pemeliharaan CS1: Bahasa yang tidak diketahui (link)
Li H, Leung KS, Wong MH, Ballester PJ (Juli 2016). "USR-VS: a web server for large-scale prospective virtual screening using ultrafast shape recognition techniques". Nucleic Acids Research (dalam bahasa Inggris). 44 (W1): W436–41. doi:10.1093/nar/gkw320. PMC 4987897. PMID 27106057.{{cite journal}}: Pemeliharaan CS1: Tanggal diterjemahkan otomatis (link)
Sperandio O, Petitjean M, Tuffery P (Juli 2009). "wwLigCSRre: a 3D ligand-based server for hit identification and optimization". Nucleic Acids Research. 37 (Web Server issue): W504–9. doi:10.1093/nar/gkp324. PMC 2703967. PMID 19429687.{{cite journal}}: Pemeliharaan CS1: Tanggal diterjemahkan otomatis (link)
Kirchmair J, Distinto S, Markt P, Schuster D, Spitzer GM, Liedl KR, Wolber G (2009). "How To Optimize Shape-Based Virtual Screening: Choosing the Right Query and Including Chemical Information". Journal of Chemical Information and Modeling. 49 (3): 678–692. doi:10.1021/ci8004226. PMID 19434901.
Toledo Warshaviak D, Golan G, Borrelli KW, Zhu K, Kalid O (Juli 2014). "Structure-based virtual screening approach for discovery of covalently bound ligands". Journal of Chemical Information and Modeling. 54 (7): 1941–50. doi:10.1021/ci500175r. PMID 24932913.{{cite journal}}: Pemeliharaan CS1: Tanggal diterjemahkan otomatis (link)
Maia EH, Assis LC, de Oliveira TA, da Silva AM, Taranto AG (2020-04-28). "Structure-Based Virtual Screening: From Classical to Artificial Intelligence". Frontiers in Chemistry. 8 343. Bibcode:2020FrCh....8..343M. doi:10.3389/fchem.2020.00343. PMC 7200080. PMID 32411671.
Kroemer RT (Agustus 2007). "Structure-based drug design: docking and scoring". Current Protein & Peptide Science. 8 (4): 312–28. CiteSeerX 10.1.1.225.959. doi:10.2174/138920307781369382. PMID 17696866. {{cite journal}}: Pemeliharaan CS1: Tanggal diterjemahkan otomatis (link)
Cavasotto CN, Orry AJ (2007). "Ligand docking and structure-based virtual screening in drug discovery". Current Topics in Medicinal Chemistry. 7 (10): 1006–14. doi:10.2174/156802607780906753. PMID 17508934.
Kooistra AJ, Vischer HF, McNaught-Flores D, Leurs R, de Esch IJ, de Graaf C (Juni 2016). "Function-specific virtual screening for GPCR ligands using a combined scoring method". Scientific Reports. 6 28288. Bibcode:2016NatSR...628288K. doi:10.1038/srep28288. PMC 4919634. PMID 27339552.{{cite journal}}: Pemeliharaan CS1: Tanggal diterjemahkan otomatis (link)
Irwin JJ, Shoichet BK, Mysinger MM, Huang N, Colizzi F, Wassam P, Cao Y (September 2009). "Automated docking screens: a feasibility study". Journal of Medicinal Chemistry. 52 (18): 5712–20. doi:10.1021/jm9006966. PMC 2745826. PMID 19719084.{{cite journal}}: Pemeliharaan CS1: Tanggal diterjemahkan otomatis (link)
Li H, Leung KS, Ballester PJ, Wong MH (2014-01-24). "istar: a web platform for large-scale protein-ligand docking". PLOS ONE. 9 (1) e85678. Bibcode:2014PLoSO...985678L. doi:10.1371/journal.pone.0085678. PMC 3901662. PMID 24475049.
Zhou H, Skolnick J (Januari 2013). "FINDSITE(comb): a threading/structure-based, proteomic-scale virtual ligand screening approach". Journal of Chemical Information and Modeling (dalam bahasa Inggris). 53 (1): 230–40. doi:10.1021/ci300510n. PMC 3557555. PMID 23240691.{{cite journal}}: Pemeliharaan CS1: Tanggal diterjemahkan otomatis (link)
Roy A, Skolnick J (Februari 2015). "LIGSIFT: an open-source tool for ligand structural alignment and virtual screening". Bioinformatics. 31 (4): 539–44. doi:10.1093/bioinformatics/btu692. PMC 4325547. PMID 25336501.{{cite journal}}: Pemeliharaan CS1: Tanggal diterjemahkan otomatis (link)
Gaulton A, Bellis LJ, Bento AP, Chambers J, Davies M, Hersey A, Light Y, McGlinchey S, Michalovich D, Al-Lazikani B, Overington JP (Januari 2012). "ChEMBL: a large-scale bioactivity database for drug discovery". Nucleic Acids Research. 40 (Database issue): D1100–7. doi:10.1093/nar/gkr777. PMC 3245175. PMID 21948594.{{cite journal}}: Pemeliharaan CS1: Tanggal diterjemahkan otomatis (link)
Wishart DS, Knox C, Guo AC, Shrivastava S, Hassanali M, Stothard P, Chang Z, Woolsey J (Januari 2006). "DrugBank: a comprehensive resource for in silico drug discovery and exploration". Nucleic Acids Research. 34 (Database issue): D668–72. doi:10.1093/nar/gkj067. PMC 1347430. PMID 16381955.{{cite journal}}: Pemeliharaan CS1: Tanggal diterjemahkan otomatis (link)
Réau M, Langenfeld F, Zagury JF, Lagarde N, Montes M (2018). "Decoys Selection in Benchmarking Datasets: Overview and Perspectives". Frontiers in Pharmacology. 9 11. doi:10.3389/fphar.2018.00011. PMC 5787549. PMID 29416509.
Ballester PJ (Desember 2019). "Selecting machine-learning scoring functions for structure-based virtual screening". Drug Discovery Today: Technologies. 32–33: 81–87. doi:10.1016/j.ddtec.2020.09.001. PMID 33386098. S2CID 224968364.{{cite journal}}: Pemeliharaan CS1: Tanggal diterjemahkan otomatis (link)
Li H, Sze KH, Lu G, Ballester PJ (2021). "Machine-learning scoring functions for structure-based virtual screening". WIREs Computational Molecular Science (dalam bahasa Inggris). 11 (1) e1478. doi:10.1002/wcms.1478. ISSN 1759-0884. S2CID 219089637.
Wallach I, Heifets A (2018). "Most Ligand-based classification benchmarks reward memorization rather than generalization". Journal of Chemical Information and Modeling. 58 (5): 916–932. arXiv:1706.06619. doi:10.1021/acs.jcim.7b00403. PMID 29698607. S2CID 195345933.
Irwin JJ (2008). "Community benchmarks for virtual screening". Journal of Computer-Aided Molecular Design. 22 (3–4): 193–9. Bibcode:2008JCAMD..22..193I. doi:10.1007/s10822-008-9189-4. PMID 18273555. S2CID 26260725.
Good AC, Oprea TI (2008). "Optimization of CAMD techniques 3. Virtual screening enrichment studies: a help or hindrance in tool selection?". Journal of Computer-Aided Molecular Design. 22 (3–4): 169–78. Bibcode:2008JCAMD..22..169G. doi:10.1007/s10822-007-9167-2. PMID 18188508. S2CID 7738182.
Schneider G (April 2010). "Virtual screening: an endless staircase?". Nature Reviews. Drug Discovery. 9 (4): 273–6. doi:10.1038/nrd3139. PMID 20357802. S2CID 205477076.{{cite journal}}: Pemeliharaan CS1: Tanggal diterjemahkan otomatis (link)
Ballester PJ (Januari 2011). "Ultrafast shape recognition: method and applications". Future Medicinal Chemistry. 3 (1): 65–78. doi:10.4155/fmc.10.280. PMID 21428826.{{cite journal}}: Pemeliharaan CS1: Tanggal diterjemahkan otomatis (link)
Lavecchia A, Di Giovanni C (2013). "Virtual screening strategies in drug discovery: a critical review". Current Medicinal Chemistry. 20 (23): 2839–60. doi:10.2174/09298673113209990001. PMID 23651302.
Spitzer GM, Heiss M, Mangold M, Markt P, Kirchmair J, Wolber G, Liedl KR (2010). "One concept, three implementations of 3D pharmacophore-based virtual screening: distinct coverage of chemical search space". Journal of Chemical Information and Modeling. 50 (7): 1241–1247. doi:10.1021/ci100136b. PMID 20583761.
Grant JA, Gallard MA, Pickup BT (1996). "A fast method of molecular shape comparison: a simple application of a Gaussian description of molecular shape". Journal of Computational Chemistry. 17 (14): 1653–1666. doi:10.1002/(SICI)1096-987X(19961115)17:14<1653::AID-JCC7>3.0.CO;2-K.
Nicholls A, Grant JA (2005). "Molecular shape and electrostatics in the encoding of relevant chemical information". Journal of Computer-Aided Molecular Design. 19 (9–10): 661–686. Bibcode:2005JCAMD..19..661N. doi:10.1007/s10822-005-9019-x. PMID 16328855.
Rush TS, Grant JA, Mosyak L, Nicholls A (2005). "A shape-based 3-D scaffold hopping method and its application to a bacterial protein-protein interaction". Journal of Medicinal Chemistry. 48 (5): 1489–1495. doi:10.1021/jm040163o. PMID 15743191.
Ni B, Wang H, Khalaf HK, Blay V, Houston DR (Mei 2024). "AutoDock-SS: AutoDock for Multiconformational Ligand-Based Virtual Screening". Journal of Chemical Information and Modeling. 64 (9): 3779–3789. doi:10.1021/acs.jcim.4c00136. PMC 11094722. PMID 38624083.{{cite journal}}: Pemeliharaan CS1: Tanggal diterjemahkan otomatis (link)
Cheeseright TJ, Mackey MD, Melville JL, Vinter JG (November 2008). "FieldScreen: virtual screening using molecular fields. Application to the DUD data set". Journal of Chemical Information and Modeling. 48 (11): 2108–2117. doi:10.1021/ci800110p. PMID 18991371.{{cite journal}}: Pemeliharaan CS1: Tanggal diterjemahkan otomatis (link)
Lang S, Slater MJ (Mei 2024). "Virtual Screening Strategies for Identifying Novel Chemotypes". Journal of Medicinal Chemistry. 67 (9): 6897–6898. doi:10.1021/acs.jmedchem.4c00906. PMID 38654500.{{cite journal}}: Pemeliharaan CS1: Tanggal diterjemahkan otomatis (link)
Neves BJ, Braga RC, Melo-Filho CC, Moreira-Filho JT, Muratov EN, Andrade CH (2018-11-13). "QSAR-Based Virtual Screening: Advances and Applications in Drug Discovery". Frontiers in Pharmacology. 9 1275. doi:10.3389/fphar.2018.01275. PMC 6262347. PMID 30524275.
Luttens, Andreas; Cabeza de Vaca, Israel; Sparring, Leonard; Brea, José; Martínez, Antón Leandro; Kahlous, Nour Aldin; Radchenko, Dmytro S.; Moroz, Yurii S.; Loza, María Isabel; Norinder, Ulf; Carlsson, Jens (2025-03-13). "Rapid traversal of vast chemical space using machine learning-guided docking screens". Nature Computational Science (dalam bahasa Inggris). 5 (4): 301–312. doi:10.1038/s43588-025-00777-x. ISSN 2662-8457. PMC 12021657. PMID 40082701.
Alsenan S, Al-Turaiki I, Hafez A (Desember 2020). "A Recurrent Neural Network model to predict blood-brain barrier permeability". Computational Biology and Chemistry. 89 107377. doi:10.1016/j.compbiolchem.2020.107377. PMID 33010784.{{cite journal}}: Pemeliharaan CS1: Tanggal diterjemahkan otomatis (link)
Dimitri GM, Lió P (Juni 2017). "DrugClust: A machine learning approach for drugs side effects prediction". Computational Biology and Chemistry. 68: 204–210. doi:10.1016/j.compbiolchem.2017.03.008. PMID 28391063.{{cite journal}}: Pemeliharaan CS1: Tanggal diterjemahkan otomatis (link)
Shoombuatong W, Schaduangrat N, Pratiwi R, Nantasenamat C (Juni 2019). "THPep: A machine learning-based approach for predicting tumor homing peptides". Computational Biology and Chemistry. 80: 441–451. doi:10.1016/j.compbiolchem.2019.05.008. PMID 31151025.{{cite journal}}: Pemeliharaan CS1: Tanggal diterjemahkan otomatis (link)
Tran, Que-Huong; Nguyen, Quoc-Thai; Vo, Nguyen-Quynh-Huong; Mai, Tan Thanh; Tran, Thi-Thuy-Nga; Tran, Thanh-Dao; Le, Minh-Tri; Trinh, Dieu-Thuong Thi; Thai, Khac-Minh (2022-04-06). "Structure-based 3D-Pharmacophore modeling to discover novel interleukin 6 inhibitors: An in silico screening, molecular dynamics simulations and binding free energy calculations". PLOS ONE (dalam bahasa Inggris). 17 (4) e0266632. Bibcode:2022PLoSO..1766632T. doi:10.1371/journal.pone.0266632. ISSN 1932-6203. PMC 8986010. PMID 35385549.
Le, M.-T.; Mai, T.T.; Huynh, P.N.H.; Tran, T.-D.; Thai, K.-M.; Nguyen, Q.-T. (2020-12-01). "Structure-based discovery of interleukin-33 inhibitors: a pharmacophore modelling, molecular docking, and molecular dynamics simulation approach". SAR and QSAR in Environmental Research (dalam bahasa Inggris). 31 (12): 883–904. Bibcode:2020SQER...31..883L. doi:10.1080/1062936X.2020.1837239. ISSN 1062-936X. PMID 33191795.
Koes, D. R.; Camacho, C. J. (2012-07-01). "ZINCPharmer: pharmacophore search of the ZINC database". Nucleic Acids Research (dalam bahasa Inggris). 40 (W1): W409–W414. doi:10.1093/nar/gks378. ISSN 0305-1048. PMC 3394271. PMID 22553363.
Bender, Brian J.; Gahbauer, Stefan; Luttens, Andreas; Lyu, Jiankun; Webb, Chase M.; Stein, Reed M.; Fink, Elissa A.; Balius, Trent E.; Carlsson, Jens; Irwin, John J.; Shoichet, Brian K. (2021). "A practical guide to large-scale docking". Nature Protocols (dalam bahasa Inggris). 16 (10): 4799–4832. doi:10.1038/s41596-021-00597-z. ISSN 1750-2799. PMC 8522653. PMID 34561691.
Pradeepkiran JA, Reddy PH (Maret 2019). "Structure Based Design and Molecular Docking Studies for Phosphorylated Tau Inhibitors in Alzheimer's Disease". Cells. 8 (3): 260. doi:10.3390/cells8030260. PMC 6468864. PMID 30893872.{{cite journal}}: Pemeliharaan CS1: Tanggal diterjemahkan otomatis (link)
Passaro, Saro; Corso, Gabriele; Wohlwend, Jeremy; Reveiz, Mateo; Thaler, Stephan; Somnath, Vignesh Ram; Getz, Noah; Portnoi, Tally; Roy, Julien (2025-06-18). "Boltz-2: Towards Accurate and Efficient Binding Affinity Prediction" (dalam bahasa Inggris). bioRxiv 10.1101/2025.06.14.659707.

ebi.ac.uk (Global: 4,422^nd place; Indonesian: 4,044^th place)

Gillet V (2013). "Ligand-Based and Structure-Based Virtual Screening" (PDF). The University of Sheffield.

nih.gov (Global: 5^th place; Indonesian: 6^th place)

pubmed.ncbi.nlm.nih.gov

Rester U (Juli 2008). "From virtuality to reality - Virtual screening in lead discovery and lead optimization: a medicinal chemistry perspective". Current Opinion in Drug Discovery & Development. 11 (4): 559–68. PMID 18600572.{{cite journal}}: Pemeliharaan CS1: Tanggal diterjemahkan otomatis (link)
Rollinger JM, Stuppner H, Langer T (2008). "Virtual screening for the discovery of bioactive natural products". Natural Compounds as Drugs Volume I. Progress in Drug Research. Fortschritte der Arzneimittelforschung. Progrès des Recherches Pharmaceutiques. Vol. 65. hlm. 211, 213–49. doi:10.1007/978-3-7643-8117-2_6. ISBN 978-3-7643-8098-4. PMC 7124045. PMID 18084917.
Bohacek RS, McMartin C, Guida WC (1996). "The art and practice of structure-based drug design: a molecular modeling perspective". Med. Res. Rev. 16 (1): 3–50. doi:10.1002/(SICI)1098-1128(199601)16:1<3::AID-MED1>3.0.CO;2-6. PMID 8788213.
McInnes C (Oktober 2007). "Virtual screening strategies in drug discovery". Current Opinion in Chemical Biology. 11 (5): 494–502. doi:10.1016/j.cbpa.2007.08.033. PMID 17936059.{{cite journal}}: Pemeliharaan CS1: Tanggal diterjemahkan otomatis (link)
Santana K, do Nascimento LD, Lima e Lima A, Damasceno V, Nahum C, Braga RC, Lameira J (2021-04-29). "Applications of Virtual Screening in Bioprospecting: Facts, Shifts, and Perspectives to Explore the Chemo-Structural Diversity of Natural Products". Frontiers in Chemistry. 9 662688. Bibcode:2021FrCh....9..155S. doi:10.3389/fchem.2021.662688. ISSN 2296-2646. PMC 8117418. PMID 33996755.
Sun H (2008). "Pharmacophore-based virtual screening". Current Medicinal Chemistry. 15 (10): 1018–24. doi:10.2174/092986708784049630. PMID 18393859.
Rush TS, Grant JA, Mosyak L, Nicholls A (Maret 2005). "A shape-based 3-D scaffold hopping method and its application to a bacterial protein-protein interaction". Journal of Medicinal Chemistry. 48 (5): 1489–95. CiteSeerX 10.1.1.455.4728. doi:10.1021/jm040163o. PMID 15743191. {{cite journal}}: Pemeliharaan CS1: Tanggal diterjemahkan otomatis (link)
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Kumar A, Zhang KY (2018). "Advances in the Development of Shape Similarity Methods and Their Application in Drug Discovery". Frontiers in Chemistry (dalam bahasa English). 6 315. Bibcode:2018FrCh....6..315K. doi:10.3389/fchem.2018.00315. PMC 6068280. PMID 30090808.{{cite journal}}: Pemeliharaan CS1: Bahasa yang tidak diketahui (link)
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Maia EH, Assis LC, de Oliveira TA, da Silva AM, Taranto AG (2020-04-28). "Structure-Based Virtual Screening: From Classical to Artificial Intelligence". Frontiers in Chemistry. 8 343. Bibcode:2020FrCh....8..343M. doi:10.3389/fchem.2020.00343. PMC 7200080. PMID 32411671.
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ncbi.nlm.nih.gov

Rollinger JM, Stuppner H, Langer T (2008). "Virtual screening for the discovery of bioactive natural products". Natural Compounds as Drugs Volume I. Progress in Drug Research. Fortschritte der Arzneimittelforschung. Progrès des Recherches Pharmaceutiques. Vol. 65. hlm. 211, 213–49. doi:10.1007/978-3-7643-8117-2_6. ISBN 978-3-7643-8098-4. PMC 7124045. PMID 18084917.
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Zhou H, Skolnick J (Januari 2013). "FINDSITE(comb): a threading/structure-based, proteomic-scale virtual ligand screening approach". Journal of Chemical Information and Modeling (dalam bahasa Inggris). 53 (1): 230–40. doi:10.1021/ci300510n. PMC 3557555. PMID 23240691.{{cite journal}}: Pemeliharaan CS1: Tanggal diterjemahkan otomatis (link)
Roy A, Skolnick J (Februari 2015). "LIGSIFT: an open-source tool for ligand structural alignment and virtual screening". Bioinformatics. 31 (4): 539–44. doi:10.1093/bioinformatics/btu692. PMC 4325547. PMID 25336501.{{cite journal}}: Pemeliharaan CS1: Tanggal diterjemahkan otomatis (link)
Gaulton A, Bellis LJ, Bento AP, Chambers J, Davies M, Hersey A, Light Y, McGlinchey S, Michalovich D, Al-Lazikani B, Overington JP (Januari 2012). "ChEMBL: a large-scale bioactivity database for drug discovery". Nucleic Acids Research. 40 (Database issue): D1100–7. doi:10.1093/nar/gkr777. PMC 3245175. PMID 21948594.{{cite journal}}: Pemeliharaan CS1: Tanggal diterjemahkan otomatis (link)
Wishart DS, Knox C, Guo AC, Shrivastava S, Hassanali M, Stothard P, Chang Z, Woolsey J (Januari 2006). "DrugBank: a comprehensive resource for in silico drug discovery and exploration". Nucleic Acids Research. 34 (Database issue): D668–72. doi:10.1093/nar/gkj067. PMC 1347430. PMID 16381955.{{cite journal}}: Pemeliharaan CS1: Tanggal diterjemahkan otomatis (link)
Réau M, Langenfeld F, Zagury JF, Lagarde N, Montes M (2018). "Decoys Selection in Benchmarking Datasets: Overview and Perspectives". Frontiers in Pharmacology. 9 11. doi:10.3389/fphar.2018.00011. PMC 5787549. PMID 29416509.
Ni B, Wang H, Khalaf HK, Blay V, Houston DR (Mei 2024). "AutoDock-SS: AutoDock for Multiconformational Ligand-Based Virtual Screening". Journal of Chemical Information and Modeling. 64 (9): 3779–3789. doi:10.1021/acs.jcim.4c00136. PMC 11094722. PMID 38624083.{{cite journal}}: Pemeliharaan CS1: Tanggal diterjemahkan otomatis (link)
Neves BJ, Braga RC, Melo-Filho CC, Moreira-Filho JT, Muratov EN, Andrade CH (2018-11-13). "QSAR-Based Virtual Screening: Advances and Applications in Drug Discovery". Frontiers in Pharmacology. 9 1275. doi:10.3389/fphar.2018.01275. PMC 6262347. PMID 30524275.
Luttens, Andreas; Cabeza de Vaca, Israel; Sparring, Leonard; Brea, José; Martínez, Antón Leandro; Kahlous, Nour Aldin; Radchenko, Dmytro S.; Moroz, Yurii S.; Loza, María Isabel; Norinder, Ulf; Carlsson, Jens (2025-03-13). "Rapid traversal of vast chemical space using machine learning-guided docking screens". Nature Computational Science (dalam bahasa Inggris). 5 (4): 301–312. doi:10.1038/s43588-025-00777-x. ISSN 2662-8457. PMC 12021657. PMID 40082701.
Tran, Que-Huong; Nguyen, Quoc-Thai; Vo, Nguyen-Quynh-Huong; Mai, Tan Thanh; Tran, Thi-Thuy-Nga; Tran, Thanh-Dao; Le, Minh-Tri; Trinh, Dieu-Thuong Thi; Thai, Khac-Minh (2022-04-06). "Structure-based 3D-Pharmacophore modeling to discover novel interleukin 6 inhibitors: An in silico screening, molecular dynamics simulations and binding free energy calculations". PLOS ONE (dalam bahasa Inggris). 17 (4) e0266632. Bibcode:2022PLoSO..1766632T. doi:10.1371/journal.pone.0266632. ISSN 1932-6203. PMC 8986010. PMID 35385549.
Koes, D. R.; Camacho, C. J. (2012-07-01). "ZINCPharmer: pharmacophore search of the ZINC database". Nucleic Acids Research (dalam bahasa Inggris). 40 (W1): W409–W414. doi:10.1093/nar/gks378. ISSN 0305-1048. PMC 3394271. PMID 22553363.
Bender, Brian J.; Gahbauer, Stefan; Luttens, Andreas; Lyu, Jiankun; Webb, Chase M.; Stein, Reed M.; Fink, Elissa A.; Balius, Trent E.; Carlsson, Jens; Irwin, John J.; Shoichet, Brian K. (2021). "A practical guide to large-scale docking". Nature Protocols (dalam bahasa Inggris). 16 (10): 4799–4832. doi:10.1038/s41596-021-00597-z. ISSN 1750-2799. PMC 8522653. PMID 34561691.
Pradeepkiran JA, Reddy PH (Maret 2019). "Structure Based Design and Molecular Docking Studies for Phosphorylated Tau Inhibitors in Alzheimer's Disease". Cells. 8 (3): 260. doi:10.3390/cells8030260. PMC 6468864. PMID 30893872.{{cite journal}}: Pemeliharaan CS1: Tanggal diterjemahkan otomatis (link)

psu.edu (Global: 299^th place; Indonesian: 372^nd place)

citeseerx.ist.psu.edu

Willet P, Barnard JM, Downs GM (1998). "Chemical similarity searching". Journal of Chemical Information and Computer Sciences. 38 (6): 983–996. CiteSeerX 10.1.1.453.1788. doi:10.1021/ci9800211. {{cite journal}}:
Rush TS, Grant JA, Mosyak L, Nicholls A (Maret 2005). "A shape-based 3-D scaffold hopping method and its application to a bacterial protein-protein interaction". Journal of Medicinal Chemistry. 48 (5): 1489–95. CiteSeerX 10.1.1.455.4728. doi:10.1021/jm040163o. PMID 15743191. {{cite journal}}: Pemeliharaan CS1: Tanggal diterjemahkan otomatis (link)
Kroemer RT (Agustus 2007). "Structure-based drug design: docking and scoring". Current Protein & Peptide Science. 8 (4): 312–28. CiteSeerX 10.1.1.225.959. doi:10.2174/138920307781369382. PMID 17696866. {{cite journal}}: Pemeliharaan CS1: Tanggal diterjemahkan otomatis (link)

semanticscholar.org (Global: 15^th place; Indonesian: 26^th place)

api.semanticscholar.org

Ballester PJ (Desember 2019). "Selecting machine-learning scoring functions for structure-based virtual screening". Drug Discovery Today: Technologies. 32–33: 81–87. doi:10.1016/j.ddtec.2020.09.001. PMID 33386098. S2CID 224968364.{{cite journal}}: Pemeliharaan CS1: Tanggal diterjemahkan otomatis (link)
Li H, Sze KH, Lu G, Ballester PJ (2021). "Machine-learning scoring functions for structure-based virtual screening". WIREs Computational Molecular Science (dalam bahasa Inggris). 11 (1) e1478. doi:10.1002/wcms.1478. ISSN 1759-0884. S2CID 219089637.
Wallach I, Heifets A (2018). "Most Ligand-based classification benchmarks reward memorization rather than generalization". Journal of Chemical Information and Modeling. 58 (5): 916–932. arXiv:1706.06619. doi:10.1021/acs.jcim.7b00403. PMID 29698607. S2CID 195345933.
Irwin JJ (2008). "Community benchmarks for virtual screening". Journal of Computer-Aided Molecular Design. 22 (3–4): 193–9. Bibcode:2008JCAMD..22..193I. doi:10.1007/s10822-008-9189-4. PMID 18273555. S2CID 26260725.
Good AC, Oprea TI (2008). "Optimization of CAMD techniques 3. Virtual screening enrichment studies: a help or hindrance in tool selection?". Journal of Computer-Aided Molecular Design. 22 (3–4): 169–78. Bibcode:2008JCAMD..22..169G. doi:10.1007/s10822-007-9167-2. PMID 18188508. S2CID 7738182.
Schneider G (April 2010). "Virtual screening: an endless staircase?". Nature Reviews. Drug Discovery. 9 (4): 273–6. doi:10.1038/nrd3139. PMID 20357802. S2CID 205477076.{{cite journal}}: Pemeliharaan CS1: Tanggal diterjemahkan otomatis (link)

tandfonline.com (Global: 286^th place; Indonesian: 353^rd place)

Le, M.-T.; Mai, T.T.; Huynh, P.N.H.; Tran, T.-D.; Thai, K.-M.; Nguyen, Q.-T. (2020-12-01). "Structure-based discovery of interleukin-33 inhibitors: a pharmacophore modelling, molecular docking, and molecular dynamics simulation approach". SAR and QSAR in Environmental Research (dalam bahasa Inggris). 31 (12): 883–904. Bibcode:2020SQER...31..883L. doi:10.1080/1062936X.2020.1837239. ISSN 1062-936X. PMID 33191795.

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Santana K, do Nascimento LD, Lima e Lima A, Damasceno V, Nahum C, Braga RC, Lameira J (2021-04-29). "Applications of Virtual Screening in Bioprospecting: Facts, Shifts, and Perspectives to Explore the Chemo-Structural Diversity of Natural Products". Frontiers in Chemistry. 9 662688. Bibcode:2021FrCh....9..155S. doi:10.3389/fchem.2021.662688. ISSN 2296-2646. PMC 8117418. PMID 33996755.
Li H, Sze KH, Lu G, Ballester PJ (2021). "Machine-learning scoring functions for structure-based virtual screening". WIREs Computational Molecular Science (dalam bahasa Inggris). 11 (1) e1478. doi:10.1002/wcms.1478. ISSN 1759-0884. S2CID 219089637.
Luttens, Andreas; Cabeza de Vaca, Israel; Sparring, Leonard; Brea, José; Martínez, Antón Leandro; Kahlous, Nour Aldin; Radchenko, Dmytro S.; Moroz, Yurii S.; Loza, María Isabel; Norinder, Ulf; Carlsson, Jens (2025-03-13). "Rapid traversal of vast chemical space using machine learning-guided docking screens". Nature Computational Science (dalam bahasa Inggris). 5 (4): 301–312. doi:10.1038/s43588-025-00777-x. ISSN 2662-8457. PMC 12021657. PMID 40082701.
Tran, Que-Huong; Nguyen, Quoc-Thai; Vo, Nguyen-Quynh-Huong; Mai, Tan Thanh; Tran, Thi-Thuy-Nga; Tran, Thanh-Dao; Le, Minh-Tri; Trinh, Dieu-Thuong Thi; Thai, Khac-Minh (2022-04-06). "Structure-based 3D-Pharmacophore modeling to discover novel interleukin 6 inhibitors: An in silico screening, molecular dynamics simulations and binding free energy calculations". PLOS ONE (dalam bahasa Inggris). 17 (4) e0266632. Bibcode:2022PLoSO..1766632T. doi:10.1371/journal.pone.0266632. ISSN 1932-6203. PMC 8986010. PMID 35385549.
Le, M.-T.; Mai, T.T.; Huynh, P.N.H.; Tran, T.-D.; Thai, K.-M.; Nguyen, Q.-T. (2020-12-01). "Structure-based discovery of interleukin-33 inhibitors: a pharmacophore modelling, molecular docking, and molecular dynamics simulation approach". SAR and QSAR in Environmental Research (dalam bahasa Inggris). 31 (12): 883–904. Bibcode:2020SQER...31..883L. doi:10.1080/1062936X.2020.1837239. ISSN 1062-936X. PMID 33191795.
Koes, D. R.; Camacho, C. J. (2012-07-01). "ZINCPharmer: pharmacophore search of the ZINC database". Nucleic Acids Research (dalam bahasa Inggris). 40 (W1): W409–W414. doi:10.1093/nar/gks378. ISSN 0305-1048. PMC 3394271. PMID 22553363.
Bender, Brian J.; Gahbauer, Stefan; Luttens, Andreas; Lyu, Jiankun; Webb, Chase M.; Stein, Reed M.; Fink, Elissa A.; Balius, Trent E.; Carlsson, Jens; Irwin, John J.; Shoichet, Brian K. (2021). "A practical guide to large-scale docking". Nature Protocols (dalam bahasa Inggris). 16 (10): 4799–4832. doi:10.1038/s41596-021-00597-z. ISSN 1750-2799. PMC 8522653. PMID 34561691.

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