Varian SARS-CoV-2 (Indonesian Wikipedia)

Analysis of information sources in references of the Wikipedia article "Varian SARS-CoV-2" in Indonesian language version.

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  • Shahhosseini, N., Wong, G., Kobinger, G.P., dan Chinikar, S. (Juni 2021). "SARS-CoV-2 Spillover Transmission due to Recombination Event". Gene Reports. 23: 101045. doi:10.1016/j.genrep.2021.101045. 
  • Shahhosseini, Nariman; Babuadze, George; Wong, Gary; Kobinger, Gary (2021). "Mutation Signatures and In Silico Docking of Novel SARS-CoV-2 Variants of Concern". Microorganisms. 9 (5): 926. doi:10.3390/microorganisms9050926alt=Dapat diakses gratis. Diakses tanggal 4 Mei 2021. 
  • Tao, Kaiming; Tzou, Philip L.; Nouhin, Janin; Gupta, Ravindra K.; de Oliveira, Tulio; Kosakovsky Pond, Sergei L.; Fera, Daniela; Shafer, Robert W. (17 September 2021). "The biological and clinical significance of emerging SARS-CoV-2 variants". Nature Reviews Genetics. doi:10.1038/s41576-021-00408-x. 
  • Campbell, F., Archer, B., Laurenson-Schafer, H., Jinnai, Y., Konings, F., Batra, N., Pavlin, B., Vandemaele, K., Van Kerkhove, M.D., Jombart, T., Morgan, O., dan le Polain de Waroux, O. (Juni 2021). "Increased transmissibility and global spread of SARS-CoV-2 variants of concern as at June 2021". Euro Surveillance. 26 (24): 2100509. doi:10.2807/1560-7917.ES.2021.26.24.2100509. 
  • Nyberg, T., Twohig, K.A., Harris, R.J., Seaman, S.R., Flannagan, J., Allen, H., Charlett, A., De Angelis, D., Dabrera, G., dan Presanis, A.M. (Juni 2021). "Risk of hospital admission for patients with SARS-CoV-2 variant B.1.1.7: cohort analysis". BMJ. 373: n1412. doi:10.1136/bmj.n1412. 
  • Collier DA, De Marco A, Ferreira IA, Meng B, Datir RP, Walls AC, et al. (Mei 2021). "Sensitivity of SARS-CoV-2 B.1.1.7 to mRNA vaccine-elicited antibodies". Nature (Published). 593 (7857): 136–141. doi:10.1038/s41586-021-03412-7alt=Dapat diakses gratis. We therefore generated pseudoviruses that carried the B.1.1.7 spike mutations with or without the additional E484K substitution and tested these against sera obtained after the first and second dose of the BNT162b2 mRNA vaccine as well as against convalescent sera. After the second vaccine dose, we observed a considerable loss of neutralising activity for the pseudovirus with the B.1.1.7 spike mutations and E484K (Fig. 3d, e). The mean fold change for the E484K-containing B.1.1.7 spike variant was 6.7 compared with 1.9 for the B.1.1.7 variant, relative to the wild-type spike protein (Fig. 3a–c and Extended Data Fig. 5). Similarly, when we tested a panel of convalescent sera with a range of neutralisation titres (Fig. 1f, g and Extended Data Fig. 5), we observed additional loss of activity against the mutant B.1.1.7 spike with E484K, with fold change of 11.4 relative to the wild-type spike protein (Fig. 3f, g and Extended Data Fig. 5). 
  • Faria NR, Mellan TA, Whittaker C, Claro IM, Candido DD, Mishra S, et al. (Mei 2021). "Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil". Science. 372 (6544): 815–821. Bibcode:2021Sci...372..815F. doi:10.1126/science.abh2644alt=Dapat diakses gratis. Within this plausible region of parameter space, P.1 can be between 1.7 and 2.4 times more transmissible (50% BCI, 2.0 median, with a 99% posterior probability of being >1) than local non-P1 lineages and can evade 21 to 46% (50% BCI, 32% median, with a 95% posterior probability of being able to evade at least 10%) of protective immunity elicited by previous infection with non-P.1 lineages, corresponding to 54 to 79% (50% BCI, 68% median) cross-immunity ... We estimate that infections are 1.2 to 1.9 times more likely (50% BCI, median 1.5, 90% posterior probability of being >1) to result in mortality in the period after the emergence of P.1, compared with before, although posterior estimates of this relative risk are also correlated with inferred cross-immunity. More broadly, the recent epidemic in Manaus has strained the city's health care system, leading to inadequate access to medical care. We therefore cannot determine whether the estimated increase in relative mortality risk is due to P.1 infection, stresses on the Manaus health care system, or both. Detailed clinical investigations of P.1 infections are needed. 
  • Freitas AR, Lemos DR, Beckedorff OA, Cavalcanti LP, Siqueira AM, Mello RC, et al. (19 April 2021). "The increase in the risk of severity and fatality rate of covid-19 in southern Brazil after the emergence of the Variant of Concern (VOC) SARS-CoV-2 P.1 was greater among young adults without pre-existing risk conditions". medRxiv (Preprint). doi:10.1101/2021.04.13.21255281. Diakses tanggal 23 Mei 2021. Female 20 to 39 years old, with no pre-existing risk conditions, were at risk of death 5.65 times higher in February (95% CI, 2.9-11.03; p < 0.0001) and in the age group of 40 and 59 years old, this risk was 7.7 times higher (95% CI, 5.01-11.83; p < 0.0001) comparing with November–December. ... The heterogeneity observed between the age groups was greater when we analysed the subgroup of the population without preexisting risk conditions where we found that the CFR in the female sex in the second wave was 1.95 times (95% CI, 1.38-2.76) the CFR of the first wave in the population over 85 years old and was 7.7 times (95% CI, 5.01-11.83; p < 0.0001) in the population between 40 and 59 years old. In the male population without previous diseases, the CFR in the second wave was 2.18 (95% CI, 1.62-2.93) times the CFR of the first wave in the population over 85 years old and 5.9 (95% CI, 3.2-10.85; p < 0, 0001) higher in the range between 20 and 39 years old. 
  • Sheikh, A., McMenamin, J., Taylor, B., dan Robertson, C. (Juni 2021). "SARS-CoV-2 Delta VOC in Scotland: demographics, risk of hospital admission, and vaccine effectiveness". Lancet. 397 (10293): 2461–2462. doi:10.1016/S0140-6736(21)01358-1. 
  • Fisman, D. dan Tuite, A. (12 Juli 2021). "Progressive Increase in Virulence of Novel SARS-CoV-2 Variants in Ontario, Canada" (PDF). medRxiv (Preprint). doi:10.1101/2021.07.05.21260050. Diakses tanggal 16 September 2021. 
  • Gazit, S. (25 Agustus 2021). "Comparing SARS-CoV-2 natural immunity to vaccine-induced immunity: reinfections versus breakthrough infections" (PDF). medRxiv. doi:10.1101/2021.08.24.21262415. 
  • Yadav, P.D., Sapkal, G.N., Abraham, P., Ella, R., Deshpande, G., Patil, D.Y., Nyayanit, D.A., Gupta, N., Sahay, R.R., Shete, A.M., Panda, S., Bhargava, B., dan Mohan, V.K. (Mei 2021). "Neutralization of variant under investigation B.1.617 with sera of BBV152 vaccinees". Clinical Infectious Diseases. Oxford University Press (ciab411). doi:10.1093/cid/ciab411. 
  • Rambaut A, Holmes EC, O'Toole Á, Hill V, McCrone JT, Ruis C, et al. (November 2020). "A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology". Nature Microbiology. 5 (11): 1403–1407. doi:10.1038/s41564-020-0770-5alt=Dapat diakses gratis.  Dikutip dalam Alm et al. (2020).
  • Alm E, Broberg EK, Connor T, Hodcroft EB, Komissarov AB, Maurer-Stroh S, et al. (The WHO European Region sequencing laboratories and GISAID EpiCoV group) (August 2020). "Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020". Euro Surveillance. 25 (32). doi:10.2807/1560-7917.ES.2020.25.32.2001410. 
  • Zhukova, Anna; Blassel, Luc; Lemoine, Frédéric; Morel, Marie; Voznica, Jakub; Gascuel, Olivier (24 November 2020). "Origin, evolution and global spread of SARS-CoV-2". Comptes Rendus Biologies: 1–20. doi:10.5802/crbiol.29alt=Dapat diakses gratis. Diarsipkan dari versi asli tanggal 21 Februari 2021. Diakses tanggal 2 Maret 2021. 
  • Zhang, W., Davis, B., Chen, S.S., Martinez, J.S., Plummer, J.T., dan Vail, E. (2021). "Emergence of a Novel SARS-CoV-2 Variant in Southern California". JAMA. 325 (13): 1324–1326. doi:10.1001/jama.2021.1612. Diakses tanggal 2 Oktober 2021. 
  • Tao, Kaiming; Tzou, Philip L.; Nouhin, Janin; Gupta, Ravindra K.; de Oliveira, Tulio; Kosakovsky Pond, Sergei L.; Fera, Daniela; Shafer, Robert W. (17 September 2021). "The biological and clinical significance of emerging SARS-CoV-2 variants". Nature Reviews Genetics: 1–17. doi:10.1038/s41576-021-00408-x. 
  • Koyama, Takahiko; Platt, Daniela; Parida, Laxmi (Juni 2020). "Variant analysis of SARS-CoV-2 genomes". Bulletin of the World Health Organization. 98: 495–504. doi:10.2471/BLT.20.253591. We detected in total 65776 variants with 5775 distinct variants. 
  • Rambaut, A., Holmes, E.C., O'Toole, Á., Hill, V., McCrone, J.T., Ruis, C., du Plessis, L., dan Pybus, O.G. (Maret 2021). "Addendum: A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology". Nature Microbiology. 6 (3): 415. doi:10.1038/s41564-021-00872-5. 
  • Kumar, S., Tao, Q., Weaver, S., Sanderford, M., Caraballo-Ortiz, M.A., Sharma, S., Pond, S.L., dan Miura, S. (Mei 2021). "An evolutionary portrait of the progenitor SARS-CoV-2 and its dominant offshoots in COVID-19 pandemic". Molecular Biology and Evolution. 38 (8): 3046–3059. doi:10.1093/molbev/msab118. 
  • Wu, F., Zhao, S., Yu, B., Chen, Y.M., Wang, W., Song, Z.G., Hu, Y., Tao, Z.W., Tian, J.H., Pei, Y.Y., Yuan, M.L., Zhang, Y.L., Dai, F.H., Liu, Y., Wang, Q.M., Zheng, J.J., Xu, L., Holmes, E.C., dan Zhang Y.Z. (Maret 2020). "A new coronavirus associated with human respiratory disease in China". Nature. 579 (7798): 265–269. Bibcode:2020Natur.579..265W. doi:10.1038/s41586-020-2008-3. 
  • Chiara, M., Horner, D.S., Gissi, C., dan Pesole, G. (Mei 2021). "Comparative Genomics Reveals Early Emergence and Biased Spatiotemporal Distribution of SARS-CoV-2". Molecular Biology and Evolution. 38 (6): 2547–2565. doi:10.1093/molbev/msab049. 
  • Zhou, P., Yang, X.L., Wang, X.G., Hu, B., Zhang, L., Zhang, W., Si, H.R., Zhu, Y., Li, B., Huang, C.L., Chen, H.D., Chen, J., Luo, Y., Guo, H., Jiang, R.D., Liu, M.Q., Chen, Y., Shen, X.R., Wang, X., Zheng, X.S., Zhao, K., Chen, Q.J., Deng, F., Liu, L.L., Yan, B., Zhan, F.X., Wang, Y.Y., Xiao, G.F., dan Shi, Z.L. (Maret 2020). "A pneumonia outbreak associated with a new coronavirus of probable bat origin". Nature. 579 (7798): 270–273. Bibcode:2020Natur.579..270Z. doi:10.1038/s41586-020-2012-7. 
  • Okada, P., Buathong, R., Phuygun, S., Thanadachakul, T., Parnmen, S., Wongboot, W., Waicharoen, S., Wacharapluesadee, S., Uttayamakul, S., Vachiraphan, A., Chittaganpitch, M., Mekha, N., Janejai, N., Iamsirithaworn, S., Lee, R.T., dan Maurer-Stroh, S. (Februari 2020). "Early transmission patterns of coronavirus disease 2019 (COVID-19) in travellers from Wuhan to Thailand, January 2020". Euro Surveillance. 25 (8). doi:10.2807/1560-7917.ES.2020.25.8.2000097. 
  • Mercatelli, Daniele; Triboli, Luca; Fornasari, Eleonora; Ray, Forest; Giorgi, Federico M. (18 November 2020). "Coronapp: A web application to annotate and monitor SARS‐CoV‐2 mutations". Journal of Medical Virology (dalam bahasa Inggris). doi:10.1002/jmv.26678alt=Dapat diakses gratis. 
  • Zhou, Wenyang; Xu, Chang; Wang, Pingping; Luo, Meng; Xu, Zhaochun; Cheng, Rui; Jin, Xiyun; Guo, Yu; Xue, Guangfu; Juan, Liran; Nie, Huan; Jiang, Qinghua (23 November 2020). "N439K variant in spike protein may alter the infection efficiency and antigenicity of SARS-CoV-2 based on molecular dynamics simulation" (dalam bahasa Inggris). bioRxiv. doi:10.1101/2020.11.21.392407. 
  • Wise, Jacqui (5 Februari 2021). "Covid-19: The E484K mutation and the risks it poses". The BMJ. 372: n359. doi:10.1136/bmj.n359alt=Dapat diakses gratis. ISSN 1756-1833. 
  • Voloch, Carolina M.; F, Ronaldo da Silva; Almeida, Luiz G. P. de; Cardoso, Cynthia C.; Brustolini, Otavio J.; Gerber, Alexandra L.; Guimarães, Ana Paula de C.; Mariani, Diana; Costa, Raissa Mirella da; Ferreira, Orlando C.; Workgroup, Covid19-UFRJ (26 Desember 2020). "Genomic characterization of a novel SARS-CoV-2 lineage from Rio de Janeiro, Brazil". Le Phare de l'Esperanto (dalam bahasa Inggris). doi:10.1101/2020.12.23.20248598. ISSN 2024-8598 – via MedRxiv. 

europa.eu

ecdc.europa.eu

  • "SARS-CoV-2 variants of concern". ECDC.eu (dalam bahasa Inggris). European Centre for Disease Prevention and Control. Diarsipkan dari versi asli tanggal 2021-06-16. Diakses tanggal 12 Mei 2021.  Diperbarui berkala

gisaid.org

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  • Faria NR, Mellan TA, Whittaker C, Claro IM, Candido DD, Mishra S, et al. (Mei 2021). "Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil". Science. 372 (6544): 815–821. Bibcode:2021Sci...372..815F. doi:10.1126/science.abh2644alt=Dapat diakses gratis. Within this plausible region of parameter space, P.1 can be between 1.7 and 2.4 times more transmissible (50% BCI, 2.0 median, with a 99% posterior probability of being >1) than local non-P1 lineages and can evade 21 to 46% (50% BCI, 32% median, with a 95% posterior probability of being able to evade at least 10%) of protective immunity elicited by previous infection with non-P.1 lineages, corresponding to 54 to 79% (50% BCI, 68% median) cross-immunity ... We estimate that infections are 1.2 to 1.9 times more likely (50% BCI, median 1.5, 90% posterior probability of being >1) to result in mortality in the period after the emergence of P.1, compared with before, although posterior estimates of this relative risk are also correlated with inferred cross-immunity. More broadly, the recent epidemic in Manaus has strained the city's health care system, leading to inadequate access to medical care. We therefore cannot determine whether the estimated increase in relative mortality risk is due to P.1 infection, stresses on the Manaus health care system, or both. Detailed clinical investigations of P.1 infections are needed. 
  • Wu, F., Zhao, S., Yu, B., Chen, Y.M., Wang, W., Song, Z.G., Hu, Y., Tao, Z.W., Tian, J.H., Pei, Y.Y., Yuan, M.L., Zhang, Y.L., Dai, F.H., Liu, Y., Wang, Q.M., Zheng, J.J., Xu, L., Holmes, E.C., dan Zhang Y.Z. (Maret 2020). "A new coronavirus associated with human respiratory disease in China". Nature. 579 (7798): 265–269. Bibcode:2020Natur.579..265W. doi:10.1038/s41586-020-2008-3. 
  • Zhou, P., Yang, X.L., Wang, X.G., Hu, B., Zhang, L., Zhang, W., Si, H.R., Zhu, Y., Li, B., Huang, C.L., Chen, H.D., Chen, J., Luo, Y., Guo, H., Jiang, R.D., Liu, M.Q., Chen, Y., Shen, X.R., Wang, X., Zheng, X.S., Zhao, K., Chen, Q.J., Deng, F., Liu, L.L., Yan, B., Zhan, F.X., Wang, Y.Y., Xiao, G.F., dan Shi, Z.L. (Maret 2020). "A pneumonia outbreak associated with a new coronavirus of probable bat origin". Nature. 579 (7798): 270–273. Bibcode:2020Natur.579..270Z. doi:10.1038/s41586-020-2012-7. 

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  • "Nextclade" (What are the clades?). nextstrain.org (dalam bahasa Inggris). Diakses tanggal 19 Januari 2021. 

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  • "Living Evidence – SARS-CoV-2 variants". Agency for Clinical Innovation. nsw.gov.au (dalam bahasa Inggris). Kementerian Kesehatan (New South Wales). 23 Juli 2021. Diakses tanggal 22 Maret 2021.  Diperbarui berkala.

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  • Mkhize, Dr Zwelini (18 December 2020). "Update on Covid-19 (18th December 2020)" (Siaran pers). South Africa. COVID-19 South African Online Portal. Diakses tanggal 23 Desember 2020. Our clinicians have also warned us that things have changed and that younger, previously healthy people are now becoming very sick. 

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