Galaxy (計算生物学) (Japanese Wikipedia)

Analysis of information sources in references of the Wikipedia article "Galaxy (計算生物学)" in Japanese language version.

refsWebsite

Global rank Japanese rank

18nih.gov

4^th place

24^th place

8doi.org

2^nd place

6^th place

6galaxyproject.org

low place

1cloudimaging.net.au

low place

1osdd.net

low place

1uci.edu

3,063^rd place

low place

1knowledgeblog.org

low place

cloudimaging.net.au

http://cloudimaging.net.au/

doi.org

Afgan, E.; Baker, D.; van den Beek, M.; Blankenberg, D.; Bouvier, D.; Čech, M.; Chilton, J.; Clements, D.; Coraor, N.; Eberhard, C.; Grüning, B.; Guerler, A.; Hillman-Jackson, J.; Von Kuster, G.; Rasche, E.; Soranzo, N.; Turaga, N.; Taylor, J.; Nekrutenko, A.; Goecks, J. (8 July 2016). "The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update". Nucleic Acids Research. 44 (W1): W3–W10. doi:10.1093/nar/gkw343. PMC 4987906. PMID 27137889。
Blankenberg, D.; Taylor, J.; Nekrutenko, A.; The Galaxy, T. (2011). “Making whole genome multiple alignments usable for biologists”. Bioinformatics 27 (17): 2426–8. doi:10.1093/bioinformatics/btr398. PMC 3157923. PMID 21775304.
Blankenberg, D.; Taylor, J.; Schenck, I.; He, J.; Zhang, Y.; Ghent, M.; Veeraraghavan, N.; Albert, I. et al. (2007). “A framework for collaborative analysis of ENCODE data: Making large-scale analyses biologist-friendly”. Genome Research 17 (6): 960–964. doi:10.1101/gr.5578007. PMC 1891355. PMID 17568012.
Schatz, M. C. (2010). “The missing graphical user interface for genomics”. Genome Biology 11 (8): 128–201. doi:10.1186/gb-2010-11-8-128. PMC 2945776. PMID 20804568.
Hildebrandt, A. K.; Stöckel, D; Fischer, N. M.; de la Garza, L; Krüger, J; Nickels, S; Röttig, M; Schärfe, C et al. (2014). “Ballaxy: Web services for structural bioinformatics”. Bioinformatics 31: 121–2. doi:10.1093/bioinformatics/btu574. PMID 25183489.
Ioannidis, J. P. A.; Allison, D. B.; Ball, C. A.; Coulibaly, I.; Cui, X.; Culhane, A. N. C.; Falchi, M.; Furlanello, C. et al. (2008). “Repeatability of published microarray gene expression analyses”. Nature Genetics 41 (2): 149–155. doi:10.1038/ng.295. PMID 19174838.
Blankenberg, Daniel; Von Kuster, Gregory; Bouvier, Emil; Baker, Dannon; Afgan, Enis; Stoler, Nicholas; Taylor, James; Nekrutenko, Anton (2014). “Dissemination of scientific software with Galaxy ToolShed”. Genome Biology 15 (2): 403. doi:10.1186/gb4161. PMID 25001293.
Sheynkman, GM; Johnson, JE; Jagtap, PD; Shortreed, MR; Onsongo, G; Frey, BL; Griffin, TJ; Smith, LM (22 August 2014). “Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variations.”. BMC Genomics 15 (703). doi:10.1186/1471-2164-15-703. PMID 25149441.

galaxyproject.org

knowledgeblog.org

taverna.knowledgeblog.org

“Looping”. The Taverna Knowledge Blog. knowledgeblog.org (2010年12月13日). 28 January 2015閲覧。

nih.gov

pubmed.ncbi.nlm.nih.gov

Afgan, E.; Baker, D.; van den Beek, M.; Blankenberg, D.; Bouvier, D.; Čech, M.; Chilton, J.; Clements, D.; Coraor, N.; Eberhard, C.; Grüning, B.; Guerler, A.; Hillman-Jackson, J.; Von Kuster, G.; Rasche, E.; Soranzo, N.; Turaga, N.; Taylor, J.; Nekrutenko, A.; Goecks, J. (8 July 2016). "The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update". Nucleic Acids Research. 44 (W1): W3–W10. doi:10.1093/nar/gkw343. PMC 4987906. PMID 27137889。
Blankenberg, D.; Taylor, J.; Nekrutenko, A.; The Galaxy, T. (2011). “Making whole genome multiple alignments usable for biologists”. Bioinformatics 27 (17): 2426–8. doi:10.1093/bioinformatics/btr398. PMC 3157923. PMID 21775304.
Blankenberg, D.; Taylor, J.; Schenck, I.; He, J.; Zhang, Y.; Ghent, M.; Veeraraghavan, N.; Albert, I. et al. (2007). “A framework for collaborative analysis of ENCODE data: Making large-scale analyses biologist-friendly”. Genome Research 17 (6): 960–964. doi:10.1101/gr.5578007. PMC 1891355. PMID 17568012.
Schatz, M. C. (2010). “The missing graphical user interface for genomics”. Genome Biology 11 (8): 128–201. doi:10.1186/gb-2010-11-8-128. PMC 2945776. PMID 20804568.
Hildebrandt, A. K.; Stöckel, D; Fischer, N. M.; de la Garza, L; Krüger, J; Nickels, S; Röttig, M; Schärfe, C et al. (2014). “Ballaxy: Web services for structural bioinformatics”. Bioinformatics 31: 121–2. doi:10.1093/bioinformatics/btu574. PMID 25183489.
Ioannidis, J. P. A.; Allison, D. B.; Ball, C. A.; Coulibaly, I.; Cui, X.; Culhane, A. N. C.; Falchi, M.; Furlanello, C. et al. (2008). “Repeatability of published microarray gene expression analyses”. Nature Genetics 41 (2): 149–155. doi:10.1038/ng.295. PMID 19174838.
Lazarus, R.; Taylor, J.; Qiu, W.; Nekrutenko, A. (2008). “Toward the commoditization of translational genomic research: Design and implementation features of the Galaxy genomic workbench”. Summit on translational bioinformatics 2008: 56–60. PMC 3041519. PMID 21347127.
Blankenberg, Daniel; Von Kuster, Gregory; Bouvier, Emil; Baker, Dannon; Afgan, Enis; Stoler, Nicholas; Taylor, James; Nekrutenko, Anton (2014). “Dissemination of scientific software with Galaxy ToolShed”. Genome Biology 15 (2): 403. doi:10.1186/gb4161. PMID 25001293.
Sheynkman, GM; Johnson, JE; Jagtap, PD; Shortreed, MR; Onsongo, G; Frey, BL; Griffin, TJ; Smith, LM (22 August 2014). “Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variations.”. BMC Genomics 15 (703). doi:10.1186/1471-2164-15-703. PMID 25149441.

ncbi.nlm.nih.gov

Afgan, E.; Baker, D.; van den Beek, M.; Blankenberg, D.; Bouvier, D.; Čech, M.; Chilton, J.; Clements, D.; Coraor, N.; Eberhard, C.; Grüning, B.; Guerler, A.; Hillman-Jackson, J.; Von Kuster, G.; Rasche, E.; Soranzo, N.; Turaga, N.; Taylor, J.; Nekrutenko, A.; Goecks, J. (8 July 2016). "The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update". Nucleic Acids Research. 44 (W1): W3–W10. doi:10.1093/nar/gkw343. PMC 4987906. PMID 27137889。
Blankenberg, D.; Taylor, J.; Nekrutenko, A.; The Galaxy, T. (2011). “Making whole genome multiple alignments usable for biologists”. Bioinformatics 27 (17): 2426–8. doi:10.1093/bioinformatics/btr398. PMC 3157923. PMID 21775304.
Blankenberg, D.; Taylor, J.; Schenck, I.; He, J.; Zhang, Y.; Ghent, M.; Veeraraghavan, N.; Albert, I. et al. (2007). “A framework for collaborative analysis of ENCODE data: Making large-scale analyses biologist-friendly”. Genome Research 17 (6): 960–964. doi:10.1101/gr.5578007. PMC 1891355. PMID 17568012.
Schatz, M. C. (2010). “The missing graphical user interface for genomics”. Genome Biology 11 (8): 128–201. doi:10.1186/gb-2010-11-8-128. PMC 2945776. PMID 20804568.
Lazarus, R.; Taylor, J.; Qiu, W.; Nekrutenko, A. (2008). “Toward the commoditization of translational genomic research: Design and implementation features of the Galaxy genomic workbench”. Summit on translational bioinformatics 2008: 56–60. PMC 3041519. PMID 21347127.

pmc.ncbi.nlm.nih.gov

Blankenberg, D.; Taylor, J.; Nekrutenko, A.; The Galaxy, T. (2011). “Making whole genome multiple alignments usable for biologists”. Bioinformatics 27 (17): 2426–8. doi:10.1093/bioinformatics/btr398. PMC 3157923. PMID 21775304.
Blankenberg, D.; Taylor, J.; Schenck, I.; He, J.; Zhang, Y.; Ghent, M.; Veeraraghavan, N.; Albert, I. et al. (2007). “A framework for collaborative analysis of ENCODE data: Making large-scale analyses biologist-friendly”. Genome Research 17 (6): 960–964. doi:10.1101/gr.5578007. PMC 1891355. PMID 17568012.
Schatz, M. C. (2010). “The missing graphical user interface for genomics”. Genome Biology 11 (8): 128–201. doi:10.1186/gb-2010-11-8-128. PMC 2945776. PMID 20804568.
Lazarus, R.; Taylor, J.; Qiu, W.; Nekrutenko, A. (2008). “Toward the commoditization of translational genomic research: Design and implementation features of the Galaxy genomic workbench”. Summit on translational bioinformatics 2008: 56–60. PMC 3041519. PMID 21347127.

Galaxy (計算生物学) (Japanese Wikipedia)

cloudimaging.net.au

doi.org

galaxyproject.org

knowledgeblog.org

taverna.knowledgeblog.org

nih.gov

pubmed.ncbi.nlm.nih.gov

ncbi.nlm.nih.gov

pmc.ncbi.nlm.nih.gov

osdd.net

osddlinux.osdd.net

uci.edu

socscicompute.ss.uci.edu