ノンコーディングDNA (Japanese Wikipedia)

Analysis of information sources in references of the Wikipedia article "ノンコーディングDNA" in Japanese language version.

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Morange, Michel (2014). “Genome as a Multipurpose Structure Built by Evolution”. Perspectives in Biology and Medicine 57 (1): 162–171. doi:10.1353/pbm.2014.0008. PMID 25345709.

arizona.edu

news.arizona.edu

Hsu C, and Stolte D (13 May 2013). "Carnivorous Plant Throws Out 'Junk' DNA" (Press release). Tucson, AZ, USA: University of Arizona. 2022年5月29日閲覧。

doi.org

“The ingenuity of bacterial genomes”. Annual Review of Microbiology 74: 815–834. (2020). doi:10.1146/annurev-micro-020518-115822. PMID 32692614.
“Human protein-coding genes and gene feature statistics in 2019”. BMC Research Notes 12 (1): 315. (2019). doi:10.1186/s13104-019-4343-8. PMC 6549324. PMID 31164174.
“Reflections on the HUPO Human Proteome Project, the Flagship Project of the Human Proteome Organization, at 10 Years”. Molecular & Cellular Proteomics 20: 100062. (2021). doi:10.1016/j.mcpro.2021.100062. PMC 8058560. PMID 33640492.
“The genetic organization of chromosomes”. Annual Review of Genetics 5: 237–256. (1971). doi:10.1146/annurev.ge.05.120171.001321. PMID 16097657.
T Ryan Gregory (2005). “Synergy between sequence and size in large-scale genomics”. Nat Rev Genet. 6 (9): 699-708. doi:10.1038/nrg1674. PMID 16151375.
“What's in a genome? The C-value enigma and the evolution of eukaryotic genome content”. Phil. Trans. R. Soc. B 370 (1678): 20140331. (2015). doi:10.1098/rstb.2014.0331. PMC 4571570. PMID 26323762.
“The g-value paradox”. Evolution and Development 4 (2): 73–75. (2002). doi:10.1046/j.1525-142X.2002.01069.x. PMID 12004964.
“The modulation of DNA content: proximate causes and ultimate consequences”. Genome Research 9 (4): 317–324. (April 1999). doi:10.1101/gr.9.4.317. PMID 10207154.
“Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes”. Science 297 (5585): 1301–1310. (2002). Bibcode: 2002Sci...297.1301A. doi:10.1126/science.1072104. PMID 12142439.
“Architecture and evolution of a minute plant genome”. Nature 498 (7452): 94–98. (2013). Bibcode: 2013Natur.498...94I. doi:10.1038/nature12132. PMC 4972453. PMID 23665961.
“Long-read sequencing uncovers the adaptive topography of a carnivorous plant genome”. Proceedings of the National Academy of Sciences 114 (22): E4435–E4441. (2017). Bibcode: 2017PNAS..114E4435L. doi:10.1073/pnas.1702072114. PMC 5465930. PMID 28507139.
Kresge, Nicole; Simoni, Robert D.; Hill, Robert L. (October 7, 2005). “The Discovery of tRNA by Paul C. Zamecnik”. Journal of Biological Chemistry 280 (40): e37–e39. doi:10.1016/S0021-9258(20)79029-0.
D DANON, Y MARIKOVSKY, U Z LITTAUER (1961-02). “A comparative electron microscopical study of RNA from different sources”. J Biophys Biochem Cytol. 9 (2): 253-61. doi:10.1083/jcb.9.2.253. PMC 2225006. PMID 13719673.
“The Noncoding RNA Revolution - Trashing Old Rules to Forge New Ones”. Cell 157 (1): 77–94. (2014). doi:10.1016/j.cell.2014.03.008. PMID 24679528.
“Congruent evolution of different classes of non-coding DNA in prokaryotic genomes”. Nucleic Acids Research 30 (19): 4264–4271. (October 2002). doi:10.1093/nar/gkf549. PMC 140549. PMID 12364605.
“Congruent evolution of different classes of non-coding DNA in prokaryotic genomes”. Nucleic Acids Research 30 (19): 4264–4271. (October 2002). doi:10.1093/nar/gkf549. PMC 140549. PMID 12364605.
“Genome-Wide Analysis of Human Long Noncoding RNAs: A Provocative Review”. Annual Review of Genomics and Human Genetics 23: 153–172. (2022). doi:10.1146/annurev-genom-112921-123710. hdl:20.500.11820/ede40d70-b99c-42b0-a378-3b9b7b256a1b. PMID 35395170.
“GENCODE: the reference human genome annotation for The ENCODE Project”. Genome Research 22 (9): 1760–1774. (2012). doi:10.1101/gr.135350.111. PMC 3431492. PMID 22955987.
“The Long Road to Understanding RNAPII Transcription Initiation and Related Syndromes”. Annual Review of Biochemistry 90: 193–219. (2021). doi:10.1146/annurev-biochem-090220-112253. PMID 34153211.
“Genomic views of distant-acting enhancers”. Nature 461 (7261): 199–205. (September 2009). Bibcode: 2009Natur.461..199V. doi:10.1038/nature08451. PMC 2923221. PMID 19741700.
岩切淳一「大規模配列データにより加速するノンコーディングRNA研究」『JSBi Bioinformatics Review』第3巻第1号、June 2022、1–10頁、doi:10.11234/jsbibr.2022.primer1。
“DNA replication origins”. Cold Spring Harbor Perspectives in Biology 5 (10): a010116. (2013). doi:10.1101/cshperspect.a010116. PMC 3783049. PMID 23838439.
“The hunt for origins of DNA replication in multicellular eukaryotes”. F1000Prime Reports 7: 30. (2015). doi:10.12703/P7-30. PMC 4371235. PMID 25926981.
“DNA replication origins—where do we begin?”. Genes & Development 30 (15): 1683–1697. (2016). doi:10.1101/gad.285114.116. PMC 5002974. PMID 27542827.
“Analytical Biases Associated with GC-Content in Molecular Evolution”. Frontiers in Genetics 8: 16. (2017). doi:10.3389/fgene.2017.00016. PMC 5309256. PMID 28261263.
“Complete genomic and epigenetic maps of human centromeres”. Science 376 (6588): 56. (2021). doi:10.1126/science.abl4178. PMC 9233505. PMID 35357911.
“Centromeric satellite DNAs: hidden sequence variation in the human population”. Genes 10 (5): 353. (2019). doi:10.3390/genes10050352. PMC 6562703. PMID 31072070.
“The unusual telomeres of Drosophila”. Trends Genet. 11 (2): 58-62. (Feb 1995). doi:10.1016/s0168-9525(00)88998-2. PMID 7716808.
“Telomeric noncoding RNA: telomeric repeat-containing RNA in telomere biology”. Wiley Interdisciplinary Reviews. RNA 5 (3): 407–419. (May 2014). doi:10.1002/wrna.1220. PMID 24523222.
“The self-organizing genome: Principles of genome architecture and function”. Cell 183 (1): 28–45. (2020). doi:10.1016/j.cell.2020.09.014. PMC 7541718. PMID 32976797.
“Re-recognition of pseudogenes: From molecular to clinical applications”. Theranostics. 10 (4): 1479–1499. (2020-01-01). doi:10.7150/thno.40659. PMC 6993246. PMID 32042317.
“Vertebrate pseudogenes”. FEBS Lett. 25 (468): 109-14.. (2000-02-25). doi:10.1016/s0014-5793(00)01199-6. PMID 10692568.
“Studying genomes through the aeons: protein families, pseudogenes and proteome evolution”. J Mol Biol. 318 (5): 1155-74. (2002-05-17). doi:10.1016/s0022-2836(02)00109-2. PMID 12083509.
“Comprehensive analysis of pseudogenes in prokaryotes: widespread gene decay and failure of putative horizontally transferred genes”. Genome Biol. 5 (9). (2004-08-26). doi:10.1186/gb-2004-5-9-r64. PMC 522871. PMID 15345048.
“Pseudogene evolution and natural selection for a compact genome”. J Hered. 91 (3): 221-7. (2000). doi:10.1093/jhered/91.3.221.. PMID 10833048.
“A pseudogene structure in 5S DNA of Xenopus laevis”. Cell 12 (1): 109-120. (1977-07). doi:10.1016/0092-8674(77)90189-1. PMID 561661.
“Gene arrangement and organization in a approximately 76 kb fragment encompassing the oriC region of the chromosome of Mycobacterium leprae”. Microbiology (Reading). 142 (11): 3147-61. (1996-11). doi:10.1099/13500872-142-11-3147. PMID 8969512.
“Structural analysis of a hmg-coA-reductase pseudogene: insights into evolutionary processes affecting the hmgr gene family in allotetraploid cotton (Gossypium hirsutum L.)”. Curr Genet. 34 (4): 241-9. (1998-10). doi:10.1007/s002940050393. PMID 9799357.
“Molecular evolution of the Cecropin multigene family in Drosophila. functional genes vs. pseudogenes”. Genetics. 150 (1): 157-71. (1998-09). doi:10.1093/genetics/150.1.157. PMC 1460299. PMID 9725836.
“Are human translated pseudogenes functional?”. Molecular Biology and Evolution 33 (3): 755–760. (2015). doi:10.1093/molbev/msv268. PMC 5009996. PMID 26589994.
“Pseudogenes are not pseudo any more.”. RNA Biology 9 (1): 27–32. (2012). doi:10.4161/rna.9.1.18277. PMID 22258143.
Roy-Engel, A. M; Carroll, M. L; Vogel, E; Garber, R. K; Nguyen, S. V; Salem, A. H; Batzer, M. A; Deininger, P. L (2001). “Alu insertion polymorphisms for the study of human genomic diversity”. Genetics 159 (1): 279–90. doi:10.1093/genetics/159.1.279. PMC 1461783. PMID 11560904.
“Genomic gems: SINE RNAs regulate mRNA production”. Current Opinion in Genetics & Development 20 (2): 149–155. (April 2010). doi:10.1016/j.gde.2010.01.004. PMC 2859989. PMID 20176473.
“Useful 'junk': Alu RNAs in the human transcriptome”. Cellular and Molecular Life Sciences 64 (14): 1793–1800. (July 2007). doi:10.1007/s00018-007-7084-0. PMID 17514354.
“InvAluable junk: the cellular impact and function of Alu and B2 RNAs”. IUBMB Life 61 (8): 831–837. (August 2009). doi:10.1002/iub.227. PMC 4049031. PMID 19621349.
“Human endogenous retroviruses: transposable elements with potential?”. Clinical and Experimental Immunology 138 (1): 1–9. (October 2004). doi:10.1111/j.1365-2249.2004.02592.x. PMC 1809191. PMID 15373898.
“Initial sequencing and analysis of the human genome”. Nature 409 (6822): 860–921. (February 2001). Bibcode: 2001Natur.409..860L. doi:10.1038/35057062. hdl:2027.42/62798. PMID 11237011.
“Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice”. Genome Research 16 (10): 1262–1269. (October 2006). doi:10.1101/gr.5290206. PMC 1581435. PMID 16963705.
“Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium”. Genome Research 16 (10): 1252–1261. (October 2006). doi:10.1101/gr.5282906. PMC 1581434. PMID 16954538.
“Abundant contribution of short tandem repeats to gene expression variation in humans”. Nature Genetics 48 (1): 22–29. (2016). doi:10.1038/ng.3461. PMC 4909355. PMID 26642241.
“High-resolution comparative analysis of great ape genomes”. Science 360 (6393): 1085. (2018). doi:10.1126/science.aar6343. PMC 6178954. PMID 29880660.
“Factors behind junk DNA in bacteria”. Genes 3 (4): 634–650. (2012). doi:10.3390/genes3040634. PMC 3899985. PMID 24705080.
Brandes, Nadav; Linial, Michal (2016). “Gene overlapping and size constraints in the viral world” (英語). Biology Direct 11 (1): 26. doi:10.1186/s13062-016-0128-3. ISSN 1745-6150. PMC 4875738. PMID 27209091.
“The case for junk DNA”. PLOS Genetics 10 (5): e1004351. (May 2014). doi:10.1371/journal.pgen.1004351. PMC 4014423. PMID 24809441.
Morange, Michel (2014). “Genome as a Multipurpose Structure Built by Evolution”. Perspectives in Biology and Medicine 57 (1): 162–171. doi:10.1353/pbm.2014.0008. PMID 25345709.
“No Gene in the Genome Makes Sense Except in the Light of Evolution.”. Annual Review of Genomics and Human Genetics 25: 71–92. (2014). doi:10.1146/annurev-genom-090413-025621. PMID 24773316.
“The advantages and limitations of trait analysis with GWAS: a review”. Plant Methods 9: 29. (2013). doi:10.1186/1746-4811-9-29. PMC 3750305. PMID 23876160.
“Genomewide association studies and assessment of the risk of disease”. The New England Journal of Medicine 363 (2): 166–76. (July 2010). doi:10.1056/NEJMra0905980. PMID 20647212.
“10 Years of GWAS Discovery: Biology, Function, and Translation”. American Journal of Human Genetics 101 (1): 5–22. (2017). doi:10.1016/j.ajhg.2017.06.005. PMC 5501872. PMID 28686856.
“The Post-GWAS Era: From Association to Function”. American Journal of Human Genetics 102 (5): 717–730. (2018). doi:10.1016/j.ajhg.2018.04.002. PMC 5986732. PMID 29727686.
“Replicability and Prediction: Lessons and Challenges from GWAS”. Trends in Genetics 34 (7): 504–517. (2018). doi:10.1016/j.tig.2018.03.005. PMC 6003860. PMID 29716745.

ensembl.org

useast.ensembl.org

“Ensemble Human reference genome GRCh38.p13”. 2024年1月16日閲覧。

handle.net

hdl.handle.net

“Genome-Wide Analysis of Human Long Noncoding RNAs: A Provocative Review”. Annual Review of Genomics and Human Genetics 23: 153–172. (2022). doi:10.1146/annurev-genom-112921-123710. hdl:20.500.11820/ede40d70-b99c-42b0-a378-3b9b7b256a1b. PMID 35395170.
“Initial sequencing and analysis of the human genome”. Nature 409 (6822): 860–921. (February 2001). Bibcode: 2001Natur.409..860L. doi:10.1038/35057062. hdl:2027.42/62798. PMID 11237011.

harvard.edu

ui.adsabs.harvard.edu

“Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes”. Science 297 (5585): 1301–1310. (2002). Bibcode: 2002Sci...297.1301A. doi:10.1126/science.1072104. PMID 12142439.
“Architecture and evolution of a minute plant genome”. Nature 498 (7452): 94–98. (2013). Bibcode: 2013Natur.498...94I. doi:10.1038/nature12132. PMC 4972453. PMID 23665961.
“Long-read sequencing uncovers the adaptive topography of a carnivorous plant genome”. Proceedings of the National Academy of Sciences 114 (22): E4435–E4441. (2017). Bibcode: 2017PNAS..114E4435L. doi:10.1073/pnas.1702072114. PMC 5465930. PMID 28507139.
“Genomic views of distant-acting enhancers”. Nature 461 (7261): 199–205. (September 2009). Bibcode: 2009Natur.461..199V. doi:10.1038/nature08451. PMC 2923221. PMID 19741700.
“Initial sequencing and analysis of the human genome”. Nature 409 (6822): 860–921. (February 2001). Bibcode: 2001Natur.409..860L. doi:10.1038/35057062. hdl:2027.42/62798. PMID 11237011.

jbc.org

Kresge, Nicole; Simoni, Robert D.; Hill, Robert L. (October 7, 2005). “The Discovery of tRNA by Paul C. Zamecnik”. Journal of Biological Chemistry 280 (40): e37–e39. doi:10.1016/S0021-9258(20)79029-0.

ncjrs.gov

National Commission on the Future of DNA Evidence (July 2002). “Using DNA to Solve Cold Cases”. アメリカ合衆国司法省. 2024年1月17日閲覧。

nih.gov

pubmed.ncbi.nlm.nih.gov

“The ingenuity of bacterial genomes”. Annual Review of Microbiology 74: 815–834. (2020). doi:10.1146/annurev-micro-020518-115822. PMID 32692614.
“Human protein-coding genes and gene feature statistics in 2019”. BMC Research Notes 12 (1): 315. (2019). doi:10.1186/s13104-019-4343-8. PMC 6549324. PMID 31164174.
“Reflections on the HUPO Human Proteome Project, the Flagship Project of the Human Proteome Organization, at 10 Years”. Molecular & Cellular Proteomics 20: 100062. (2021). doi:10.1016/j.mcpro.2021.100062. PMC 8058560. PMID 33640492.
“The genetic organization of chromosomes”. Annual Review of Genetics 5: 237–256. (1971). doi:10.1146/annurev.ge.05.120171.001321. PMID 16097657.
T Ryan Gregory (2005). “Synergy between sequence and size in large-scale genomics”. Nat Rev Genet. 6 (9): 699-708. doi:10.1038/nrg1674. PMID 16151375.
“What's in a genome? The C-value enigma and the evolution of eukaryotic genome content”. Phil. Trans. R. Soc. B 370 (1678): 20140331. (2015). doi:10.1098/rstb.2014.0331. PMC 4571570. PMID 26323762.
“The g-value paradox”. Evolution and Development 4 (2): 73–75. (2002). doi:10.1046/j.1525-142X.2002.01069.x. PMID 12004964.
“The modulation of DNA content: proximate causes and ultimate consequences”. Genome Research 9 (4): 317–324. (April 1999). doi:10.1101/gr.9.4.317. PMID 10207154.
“Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes”. Science 297 (5585): 1301–1310. (2002). Bibcode: 2002Sci...297.1301A. doi:10.1126/science.1072104. PMID 12142439.
“So much "junk" DNA in our genome”. Brookhaven Symposia in Biology 23: 366–370. (1972). OCLC 101819442. PMID 5065367.
“Architecture and evolution of a minute plant genome”. Nature 498 (7452): 94–98. (2013). Bibcode: 2013Natur.498...94I. doi:10.1038/nature12132. PMC 4972453. PMID 23665961.
“Long-read sequencing uncovers the adaptive topography of a carnivorous plant genome”. Proceedings of the National Academy of Sciences 114 (22): E4435–E4441. (2017). Bibcode: 2017PNAS..114E4435L. doi:10.1073/pnas.1702072114. PMC 5465930. PMID 28507139.
D DANON, Y MARIKOVSKY, U Z LITTAUER (1961-02). “A comparative electron microscopical study of RNA from different sources”. J Biophys Biochem Cytol. 9 (2): 253-61. doi:10.1083/jcb.9.2.253. PMC 2225006. PMID 13719673.
“The Noncoding RNA Revolution - Trashing Old Rules to Forge New Ones”. Cell 157 (1): 77–94. (2014). doi:10.1016/j.cell.2014.03.008. PMID 24679528.
“Congruent evolution of different classes of non-coding DNA in prokaryotic genomes”. Nucleic Acids Research 30 (19): 4264–4271. (October 2002). doi:10.1093/nar/gkf549. PMC 140549. PMID 12364605.
“Congruent evolution of different classes of non-coding DNA in prokaryotic genomes”. Nucleic Acids Research 30 (19): 4264–4271. (October 2002). doi:10.1093/nar/gkf549. PMC 140549. PMID 12364605.
“Genome-Wide Analysis of Human Long Noncoding RNAs: A Provocative Review”. Annual Review of Genomics and Human Genetics 23: 153–172. (2022). doi:10.1146/annurev-genom-112921-123710. hdl:20.500.11820/ede40d70-b99c-42b0-a378-3b9b7b256a1b. PMID 35395170.
“GENCODE: the reference human genome annotation for The ENCODE Project”. Genome Research 22 (9): 1760–1774. (2012). doi:10.1101/gr.135350.111. PMC 3431492. PMID 22955987.
“The Long Road to Understanding RNAPII Transcription Initiation and Related Syndromes”. Annual Review of Biochemistry 90: 193–219. (2021). doi:10.1146/annurev-biochem-090220-112253. PMID 34153211.
“Genomic views of distant-acting enhancers”. Nature 461 (7261): 199–205. (September 2009). Bibcode: 2009Natur.461..199V. doi:10.1038/nature08451. PMC 2923221. PMID 19741700.
“DNA replication origins”. Cold Spring Harbor Perspectives in Biology 5 (10): a010116. (2013). doi:10.1101/cshperspect.a010116. PMC 3783049. PMID 23838439.
“The hunt for origins of DNA replication in multicellular eukaryotes”. F1000Prime Reports 7: 30. (2015). doi:10.12703/P7-30. PMC 4371235. PMID 25926981.
“DNA replication origins—where do we begin?”. Genes & Development 30 (15): 1683–1697. (2016). doi:10.1101/gad.285114.116. PMC 5002974. PMID 27542827.
“Analytical Biases Associated with GC-Content in Molecular Evolution”. Frontiers in Genetics 8: 16. (2017). doi:10.3389/fgene.2017.00016. PMC 5309256. PMID 28261263.
“Complete genomic and epigenetic maps of human centromeres”. Science 376 (6588): 56. (2021). doi:10.1126/science.abl4178. PMC 9233505. PMID 35357911.
“Centromeric satellite DNAs: hidden sequence variation in the human population”. Genes 10 (5): 353. (2019). doi:10.3390/genes10050352. PMC 6562703. PMID 31072070.
“The unusual telomeres of Drosophila”. Trends Genet. 11 (2): 58-62. (Feb 1995). doi:10.1016/s0168-9525(00)88998-2. PMID 7716808.
“Telomeric noncoding RNA: telomeric repeat-containing RNA in telomere biology”. Wiley Interdisciplinary Reviews. RNA 5 (3): 407–419. (May 2014). doi:10.1002/wrna.1220. PMID 24523222.
“The self-organizing genome: Principles of genome architecture and function”. Cell 183 (1): 28–45. (2020). doi:10.1016/j.cell.2020.09.014. PMC 7541718. PMID 32976797.
“Re-recognition of pseudogenes: From molecular to clinical applications”. Theranostics. 10 (4): 1479–1499. (2020-01-01). doi:10.7150/thno.40659. PMC 6993246. PMID 32042317.
“Vertebrate pseudogenes”. FEBS Lett. 25 (468): 109-14.. (2000-02-25). doi:10.1016/s0014-5793(00)01199-6. PMID 10692568.
“Studying genomes through the aeons: protein families, pseudogenes and proteome evolution”. J Mol Biol. 318 (5): 1155-74. (2002-05-17). doi:10.1016/s0022-2836(02)00109-2. PMID 12083509.
“Comprehensive analysis of pseudogenes in prokaryotes: widespread gene decay and failure of putative horizontally transferred genes”. Genome Biol. 5 (9). (2004-08-26). doi:10.1186/gb-2004-5-9-r64. PMC 522871. PMID 15345048.
“Pseudogene evolution and natural selection for a compact genome”. J Hered. 91 (3): 221-7. (2000). doi:10.1093/jhered/91.3.221.. PMID 10833048.
“A pseudogene structure in 5S DNA of Xenopus laevis”. Cell 12 (1): 109-120. (1977-07). doi:10.1016/0092-8674(77)90189-1. PMID 561661.
“Gene arrangement and organization in a approximately 76 kb fragment encompassing the oriC region of the chromosome of Mycobacterium leprae”. Microbiology (Reading). 142 (11): 3147-61. (1996-11). doi:10.1099/13500872-142-11-3147. PMID 8969512.
“Structural analysis of a hmg-coA-reductase pseudogene: insights into evolutionary processes affecting the hmgr gene family in allotetraploid cotton (Gossypium hirsutum L.)”. Curr Genet. 34 (4): 241-9. (1998-10). doi:10.1007/s002940050393. PMID 9799357.
“Molecular evolution of the Cecropin multigene family in Drosophila. functional genes vs. pseudogenes”. Genetics. 150 (1): 157-71. (1998-09). doi:10.1093/genetics/150.1.157. PMC 1460299. PMID 9725836.
“Are human translated pseudogenes functional?”. Molecular Biology and Evolution 33 (3): 755–760. (2015). doi:10.1093/molbev/msv268. PMC 5009996. PMID 26589994.
“Pseudogenes are not pseudo any more.”. RNA Biology 9 (1): 27–32. (2012). doi:10.4161/rna.9.1.18277. PMID 22258143.
Roy-Engel, A. M; Carroll, M. L; Vogel, E; Garber, R. K; Nguyen, S. V; Salem, A. H; Batzer, M. A; Deininger, P. L (2001). “Alu insertion polymorphisms for the study of human genomic diversity”. Genetics 159 (1): 279–90. doi:10.1093/genetics/159.1.279. PMC 1461783. PMID 11560904.
“Genomic gems: SINE RNAs regulate mRNA production”. Current Opinion in Genetics & Development 20 (2): 149–155. (April 2010). doi:10.1016/j.gde.2010.01.004. PMC 2859989. PMID 20176473.
“Useful 'junk': Alu RNAs in the human transcriptome”. Cellular and Molecular Life Sciences 64 (14): 1793–1800. (July 2007). doi:10.1007/s00018-007-7084-0. PMID 17514354.
“InvAluable junk: the cellular impact and function of Alu and B2 RNAs”. IUBMB Life 61 (8): 831–837. (August 2009). doi:10.1002/iub.227. PMC 4049031. PMID 19621349.
“Human endogenous retroviruses: transposable elements with potential?”. Clinical and Experimental Immunology 138 (1): 1–9. (October 2004). doi:10.1111/j.1365-2249.2004.02592.x. PMC 1809191. PMID 15373898.
“Initial sequencing and analysis of the human genome”. Nature 409 (6822): 860–921. (February 2001). Bibcode: 2001Natur.409..860L. doi:10.1038/35057062. hdl:2027.42/62798. PMID 11237011.
“Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice”. Genome Research 16 (10): 1262–1269. (October 2006). doi:10.1101/gr.5290206. PMC 1581435. PMID 16963705.
“Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium”. Genome Research 16 (10): 1252–1261. (October 2006). doi:10.1101/gr.5282906. PMC 1581434. PMID 16954538.
“Abundant contribution of short tandem repeats to gene expression variation in humans”. Nature Genetics 48 (1): 22–29. (2016). doi:10.1038/ng.3461. PMC 4909355. PMID 26642241.
“High-resolution comparative analysis of great ape genomes”. Science 360 (6393): 1085. (2018). doi:10.1126/science.aar6343. PMC 6178954. PMID 29880660.
“Factors behind junk DNA in bacteria”. Genes 3 (4): 634–650. (2012). doi:10.3390/genes3040634. PMC 3899985. PMID 24705080.
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Brandes, Nadav; Linial, Michal (2016). “Gene overlapping and size constraints in the viral world” (英語). Biology Direct 11 (1): 26. doi:10.1186/s13062-016-0128-3. ISSN 1745-6150. PMC 4875738. PMID 27209091.