メタゲノミクス (Japanese Wikipedia)

Analysis of information sources in references of the Wikipedia article "メタゲノミクス" in Japanese language version.

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arxiv.org

“Giant viruses of the Kutch Desert”. Archives of Virology 161 (3): 721-4. (March 2016). arXiv:1410.1278. doi:10.1007/s00705-015-2720-8. PMID 26666442.
“The "Giant Virus Finder" discovers an abundance of giant viruses in the Antarctic dry valleys”. Archives of Virology 162 (6): 1671-1676. (June 2017). arXiv:1503.05575. doi:10.1007/s00705-017-3286-4. PMID 28247094.

asm.org

jb.asm.org

Schmidt, T M; DeLong, E F; Pace, N R (1991). “Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing.” (英語). Journal of Bacteriology 173 (14): 4371-4378. doi:10.1128/JB.173.14.4371-4378.1991. ISSN 0021-9193. PMC 208098. PMID 2066334.
Stein, J L; Marsh, T L; Wu, K Y; Shizuya, H; DeLong, E F (1996). “Characterization of uncultivated prokaryotes: isolation and analysis of a 40-kilobase-pair genome fragment from a planktonic marine archaeon.” (英語). Journal of bacteriology 178 (3): 591-599. doi:10.1128/JB.178.3.591-599.1996. ISSN 0021-9193. PMC 177699. PMID 8550487. https://jb.asm.org/content/178/3/591.

mmbr.asm.org

Kunin, V.; Copeland, A.; Lapidus, A.; Mavromatis, K.; Hugenholtz, P. (2008-12-01). “A Bioinformatician's Guide to Metagenomics” (英語). Microbiology and Molecular Biology Reviews 72 (4): 557-578. doi:10.1128/MMBR.00009-08. ISSN 1092-2172. PMC 2593568. PMID 19052320.

aem.asm.org

Simon, Carola; Daniel, Rolf (2011-02-15). “Metagenomic Analyses: Past and Future Trends” (英語). Applied and Environmental Microbiology 77 (4): 1153-1161. doi:10.1128/AEM.02345-10. ISSN 0099-2240. PMC 3067235. PMID 21169428.

asmscience.org

Jansson, Janet (2011-01-01). “Towards “Tera-Terra”: Terabase Sequencing of Terrestrial Metagenomes: Microbial ecologists are taking a metagenomics approach to analyze complex and diverse soil microbial communities” (英語). Microbe Magazine 6 (7): 309-315. doi:10.1128/microbe.6.309.1. ISSN 1558-7452.

biomedcentral.com

bmcbioinformatics.biomedcentral.com

Meyer, F; Paarmann, D; D'Souza, M; Olson, R; Glass, Em; Kubal, M; Paczian, T; Rodriguez, A et al. (2008-12). “The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes” (英語). BMC Bioinformatics 9 (1): 386. doi:10.1186/1471-2105-9-386. ISSN 1471-2105. PMC 2563014. PMID 18803844.
Mitra, Suparna; Rupek, Paul; Richter, Daniel C; Urich, Tim; Gilbert, Jack A; Meyer, Folker; Wilke, Andreas; Huson, Daniel H (2011-12). “Functional analysis of metagenomes and metatranscriptomes using SEED and KEGG” (英語). BMC Bioinformatics 12 (S1): S21. doi:10.1186/1471-2105-12-S1-S21. ISSN 1471-2105. PMC 3044276. PMID 21342551.
Bazinet, Adam L; Cummings, Michael P (2012-12). “A comparative evaluation of sequence classification programs” (英語). BMC Bioinformatics 13 (1): 92. doi:10.1186/1471-2105-13-92. ISSN 1471-2105. PMC 3428669. PMID 22574964.
Maillet, Nicolas; Lemaitre, Claire; Chikhi, Rayan; Lavenier, Dominique; Peterlongo, Pierre (2012-12). “Compareads: comparing huge metagenomic experiments” (英語). BMC Bioinformatics 13 (S19): S10. doi:10.1186/1471-2105-13-S19-S10. ISSN 1471-2105. PMC 3526429. PMID 23282463.

bmcgenomics.biomedcentral.com

Edwards, Robert A; Rodriguez-Brito, Beltran; Wegley, Linda; Haynes, Matthew; Breitbart, Mya; Peterson, Dean M; Saar, Martin O; Alexander, Scott et al. (2006-12). “Using pyrosequencing to shed light on deep mine microbial ecology” (英語). BMC Genomics 7 (1): 57. doi:10.1186/1471-2164-7-57. ISSN 1471-2164. PMC 1483832. PMID 16549033.
Jiang, Bai; Song, Kai; Ren, Jie; Deng, Minghua; Sun, Fengzhu; Zhang, Xuegong (2012). “Comparison of metagenomic samples using sequence signatures” (英語). BMC Genomics 13 (1): 730. doi:10.1186/1471-2164-13-730. ISSN 1471-2164. PMC 3549735. PMID 23268604.
Liu, Bo; Gibbons, Theodore; Ghodsi, Mohammad; Treangen, Todd; Pop, Mihai (2011). “Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences” (英語). BMC Genomics 12 (Suppl 2): S4. doi:10.1186/1471-2164-12-S2-S4. ISSN 1471-2164. PMC 3194235. PMID 21989143.

biotechnologyforbiofuels.biomedcentral.com

Li, Luen-Luen; McCorkle, Sean R; Monchy, Sebastien; Taghavi, Safiyh; van der Lelie, Daniel (2009). “Bioprospecting metagenomes: glycosyl hydrolases for converting biomass” (英語). Biotechnology for Biofuels 2 (1): 10. doi:10.1186/1754-6834-2-10. ISSN 1754-6834. PMC 2694162. PMID 19450243.
Parachin, Nádia; Gorwa-Grauslund, Marie F (2011). “Isolation of xylose isomerases by sequence- and function-based screening from a soil metagenomic library” (英語). Biotechnology for Biofuels 4 (1): 9. doi:10.1186/1754-6834-4-9. ISSN 1754-6834. PMC 3113934. PMID 21545702.

microbiomejournal.biomedcentral.com

Rausch, Philipp; Rühlemann, Malte; Hermes, Britt M.; Doms, Shauni; Dagan, Tal; Dierking, Katja; Domin, Hanna; Fraune, Sebastian et al. (2019-12). “Comparative analysis of amplicon and metagenomic sequencing methods reveals key features in the evolution of animal metaorganisms” (英語). Microbiome 7 (1): 133. doi:10.1186/s40168-019-0743-1. ISSN 2049-2618. PMC 6744666. PMID 31521200.

biomedcentral.com

Ounit, Rachid; Wanamaker, Steve; Close, Timothy J; Lonardi, Stefano (2015-12). “CLARK: fast and accurate classification of metagenomic and genomic sequences using discriminative k-mers” (英語). BMC Genomics 16 (1): 236. doi:10.1186/s12864-015-1419-2. ISSN 1471-2164. PMC 4428112. PMID 25879410.

genomemedicine.biomedcentral.com

Miller, Ruth R; Montoya, Vincent; Gardy, Jennifer L; Patrick, David M; Tang, Patrick (2013). “Metagenomics for pathogen detection in public health” (英語). Genome Medicine 5 (9): 81. doi:10.1186/gm485. ISSN 1756-994X. PMC 3978900. PMID 24050114.

claudiacopeland.com

“The World Within Us”. Healthcare Journal of New Orleans: 21-26. (Sep-Oct 2017).

cshlp.org

genome.cshlp.org

Huson, D. H.; Mitra, S.; Ruscheweyh, H.-J.; Weber, N.; Schuster, S. C. (2011-09-01). “Integrative analysis of environmental sequences using MEGAN4” (英語). Genome Research 21 (9): 1552-1560. doi:10.1101/gr.120618.111. ISSN 1088-9051. PMC 3166839. PMID 21690186.

doi.org

Eisen, Jonathan A (2007-03-13). Simon Levin. ed. “Environmental Shotgun Sequencing: Its Potential and Challenges for Studying the Hidden World of Microbes” (英語). PLoS Biology 5 (3): e82. doi:10.1371/journal.pbio.0050082. ISSN 1545-7885. PMC 1821061. PMID 17355177.
Rausch, Philipp; Rühlemann, Malte; Hermes, Britt M.; Doms, Shauni; Dagan, Tal; Dierking, Katja; Domin, Hanna; Fraune, Sebastian et al. (2019-12). “Comparative analysis of amplicon and metagenomic sequencing methods reveals key features in the evolution of animal metaorganisms” (英語). Microbiome 7 (1): 133. doi:10.1186/s40168-019-0743-1. ISSN 2049-2618. PMC 6744666. PMID 31521200.
Handelsman, J.; Rondon, M. R.; Brady, S. F.; Clardy, J.; Goodman, R. M. (1998-10). “Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products”. Chemistry & Biology 5 (10): R245-249. doi:10.1016/s1074-5521(98)90108-9. ISSN 1074-5521. PMID 9818143.
Chen, K.; Pachter, L. (2005). "Bioinformatics for Whole-Genome Shotgun Sequencing of Microbial Communities". PLoS Computational Biology 1 (2): e24. doi:10.1371/journal.pcbi.0010024
Lane, D. J.; Pace, B.; Olsen, G. J.; Stahl, D. A.; Sogin, M. L.; Pace, N. R. (1985-10). “Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses”. Proceedings of the National Academy of Sciences of the United States of America 82 (20): 6955-6959. doi:10.1073/pnas.82.20.6955. ISSN 0027-8424. PMC 391288. PMID 2413450.
Pace, Norman R.; Stahl, David A.; Lane, David J.; Olsen, Gary J. (1986). Marshall, K. C.. ed (英語). Advances in Microbial Ecology. Boston, MA: Springer US. pp. 1-55. doi:10.1007/978-1-4757-0611-6_1. ISBN 978-1-4757-0611-6
Schmidt, T M; DeLong, E F; Pace, N R (1991). “Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing.” (英語). Journal of Bacteriology 173 (14): 4371-4378. doi:10.1128/JB.173.14.4371-4378.1991. ISSN 0021-9193. PMC 208098. PMID 2066334.
Healy, F. G.; Ray, R. M.; Aldrich, H. C.; Wilkie, A. C.; Ingram, L. O.; Shanmugam, K. T. (1995-09). “Direct isolation of functional genes encoding cellulases from the microbial consortia in a thermophilic, anaerobic digester maintained on lignocellulose” (英語). Applied Microbiology and Biotechnology 43 (4): 667-674. doi:10.1007/BF00164771. ISSN 0175-7598.
Stein, J L; Marsh, T L; Wu, K Y; Shizuya, H; DeLong, E F (1996). “Characterization of uncultivated prokaryotes: isolation and analysis of a 40-kilobase-pair genome fragment from a planktonic marine archaeon.” (英語). Journal of bacteriology 178 (3): 591-599. doi:10.1128/JB.178.3.591-599.1996. ISSN 0021-9193. PMC 177699. PMID 8550487. https://jb.asm.org/content/178/3/591.
Breitbart, M.; Salamon, P.; Andresen, B.; Mahaffy, J. M.; Segall, A. M.; Mead, D.; Azam, F.; Rohwer, F. (2002-10-29). “Genomic analysis of uncultured marine viral communities” (英語). Proceedings of the National Academy of Sciences 99 (22): 14250-14255. doi:10.1073/pnas.202488399. ISSN 0027-8424. PMC 137870. PMID 12384570.
Tyson, Gene W.; Chapman, Jarrod; Hugenholtz, Philip; Allen, Eric E.; Ram, Rachna J.; Richardson, Paul M.; Solovyev, Victor V.; Rubin, Edward M. et al. (2004-03). “Community structure and metabolism through reconstruction of microbial genomes from the environment” (英語). Nature 428 (6978): 37-43. doi:10.1038/nature02340. ISSN 0028-0836.
Venter, J. C. (2004-04-02). “Environmental Genome Shotgun Sequencing of the Sargasso Sea” (英語). Science 304 (5667): 66-74. doi:10.1126/science.1093857. ISSN 0036-8075.
Yooseph, Shibu; Nealson, Kenneth H.; Rusch, Douglas B.; McCrow, John P.; Dupont, Christopher L.; Kim, Maria; Johnson, Justin; Montgomery, Robert et al. (2010-11). “Genomic and functional adaptation in surface ocean planktonic prokaryotes” (英語). Nature 468 (7320): 60-66. doi:10.1038/nature09530. ISSN 0028-0836.
Poinar, Hendrik N.; Schwarz, Carsten; Qi, Ji; Shapiro, Beth; MacPhee, Ross D. E.; Buigues, Bernard; Tikhonov, Alexei; Huson, Daniel H. et al. (2006-01-20). “Metagenomics to Paleogenomics: Large-Scale Sequencing of Mammoth DNA” (英語). Science 311 (5759): 392-394. doi:10.1126/science.1123360. ISSN 0036-8075.
Edwards, Robert A; Rodriguez-Brito, Beltran; Wegley, Linda; Haynes, Matthew; Breitbart, Mya; Peterson, Dean M; Saar, Martin O; Alexander, Scott et al. (2006-12). “Using pyrosequencing to shed light on deep mine microbial ecology” (英語). BMC Genomics 7 (1): 57. doi:10.1186/1471-2164-7-57. ISSN 1471-2164. PMC 1483832. PMID 16549033.
Jiang, Bai; Song, Kai; Ren, Jie; Deng, Minghua; Sun, Fengzhu; Zhang, Xuegong (2012). “Comparison of metagenomic samples using sequence signatures” (英語). BMC Genomics 13 (1): 730. doi:10.1186/1471-2164-13-730. ISSN 1471-2164. PMC 3549735. PMID 23268604.
服部正平; 林哲也; 黒川顕; 伊藤武彦; 桑原知巳『ヒト腸内細菌叢のゲノムシークエンス』公益財団法人腸内細菌学会、2007年。doi:10.11209/jim.21.187。https://doi.org/10.11209/jim.21.187。2020年5月25日閲覧。
Rodrigue, Sébastien; Materna, Arne C.; Timberlake, Sonia C.; Blackburn, Matthew C.; Malmstrom, Rex R.; Alm, Eric J.; Chisholm, Sallie W. (2010-07-28). Gilbert, Jack Anthony. ed. “Unlocking Short Read Sequencing for Metagenomics” (英語). PLoS ONE 5 (7): e11840. doi:10.1371/journal.pone.0011840. ISSN 1932-6203. PMC 2911387. PMID 20676378.
Schuster, Stephan C (2008-01). “Next-generation sequencing transforms today's biology” (英語). Nature Methods 5 (1): 16-18. doi:10.1038/nmeth1156. ISSN 1548-7091.
“Metagenomics versus Moore's law” (英語). Nature Methods 6 (9): 623-623. (2009-09). doi:10.1038/nmeth0909-623. ISSN 1548-7091.
Hiraoka, Satoshi; Yang, Ching-chia; Iwasaki, Wataru (2016). “Metagenomics and Bioinformatics in Microbial Ecology: Current Status and Beyond” (英語). Microbes and environments 31 (3): 204-212. doi:10.1264/jsme2.ME16024. ISSN 1342-6311. PMC 5017796. PMID 27383682. https://doi.org/10.1264/jsme2.ME16024.
Watson, Mick; Roehe, Rainer; Walker, Alan W.; Dewhurst, Richard J.; Snelling, Timothy J.; Ivan Liachko; Langford, Kyle W.; Press, Maximilian O. et al. (28 February 2018). “Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen” (英語). Nature Communications 9 (1): 870. Bibcode: 2018NatCo...9..870S. doi:10.1038/s41467-018-03317-6. ISSN 2041-1723. PMC 5830445. PMID 29491419.
Thomas, T.; Gilbert, J.; Meyer, F. (2012). “Metagenomics - a guide from sampling to data analysis”. Microbial Informatics and Experimentation 2 (1): 3. doi:10.1186/2042-5783-2-3. PMC 3351745. PMID 22587947.
Hess, M.; Sczyrba, A.; Egan, R.; Kim, T.-W.; Chokhawala, H.; Schroth, G.; Luo, S.; Clark, D. S. et al. (2011-01-28). “Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen” (英語). Science 331 (6016): 463-467. doi:10.1126/science.1200387. ISSN 0036-8075.
MetaHIT Consortium; Qin, Junjie; Li, Ruiqiang; Raes, Jeroen; Arumugam, Manimozhiyan; Burgdorf, Kristoffer Solvsten; Manichanh, Chaysavanh; Nielsen, Trine et al. (2010-03). “A human gut microbial gene catalogue established by metagenomic sequencing” (英語). Nature 464 (7285): 59-65. doi:10.1038/nature08821. ISSN 0028-0836. PMC 3779803. PMID 20203603.
Oulas, A; Pavloudi, C; Polymenakou, P; Pavlopoulos, GA; Papanikolaou, N; Kotoulas, G; Arvanitidis, C; Iliopoulos, I (2015). “Metagenomics: tools and insights for analyzing next-generation sequencing data derived from biodiversity studies”. Bioinformatics and Biology Insights 9: 75-88. doi:10.4137/BBI.S12462. PMC 4426941. PMID 25983555.
Mende, Daniel R.; Alison S. Waller; Shinichi Sunagawa; Aino I. Järvelin; Michelle M. Chan; Manimozhiyan Arumugam; Jeroen Raes; Peer Bork (23 February 2012). “Assessment of Metagenomic Assembly Using Simulated Next Generation Sequencing Data”. PLoS ONE 7 (2): e31386. Bibcode: 2012PLoSO...731386M. doi:10.1371/journal.pone.0031386. ISSN 1932-6203. PMC 3285633. PMID 22384016.
Balzer, S.; Malde, K.; Grohme, M. A.; Jonassen, I. (2013). “Filtering duplicate reads from 454 pyrosequencing data”. Bioinformatics 29 (7): 830-836. doi:10.1093/bioinformatics/btt047. PMC 3605598. PMID 23376350.
Mohammed, MH; Sudha Chadaram; Dinakar Komanduri; Tarini Shankar Ghosh; Sharmila S Mande (2011). “Eu-Detect: an algorithm for detecting eukaryotic sequences in metagenomic data sets”. Journal of Biosciences 36 (4): 709-717. doi:10.1007/s12038-011-9105-2. PMID 21857117.
R, Schmeider; R Edwards (2011). “Fast identification and removal of sequence contamination from genomic and metagenomic datasets”. PLoS ONE 6 (3): e17288. Bibcode: 2011PLoSO...617288S. doi:10.1371/journal.pone.0017288. PMC 3052304. PMID 21408061.
Kunin, V.; Copeland, A.; Lapidus, A.; Mavromatis, K.; Hugenholtz, P. (2008-12-01). “A Bioinformatician's Guide to Metagenomics” (英語). Microbiology and Molecular Biology Reviews 72 (4): 557-578. doi:10.1128/MMBR.00009-08. ISSN 1092-2172. PMC 2593568. PMID 19052320.
Burton, Joshua N.; Liachko, Ivan; Dunham, Maitreya J.; Shendure, Jay (2014-07). “Species-Level Deconvolution of Metagenome Assemblies with Hi-C-Based Contact Probability Maps” (英語). G3: Genes|Genomes|Genetics 4 (7): 1339-1346. doi:10.1534/g3.114.011825. ISSN 2160-1836. PMC 4455782. PMID 24855317.
Wooley, John C.; Godzik, Adam; Friedberg, Iddo (2010-02-26). Bourne, Philip E.. ed. “A Primer on Metagenomics” (英語). PLoS Computational Biology 6 (2): e1000667. doi:10.1371/journal.pcbi.1000667. ISSN 1553-7358. PMC 2829047. PMID 20195499.
Zerbino, D. R.; Birney, E. (2008-02-21). “Velvet: Algorithms for de novo short read assembly using de Bruijn graphs” (英語). Genome Research 18 (5): 821-829. doi:10.1101/gr.074492.107. ISSN 1088-9051. PMC 2336801. PMID 18349386.
Namiki, Toshiaki; Hachiya, Tsuyoshi; Tanaka, Hideaki; Sakakibara, Yasubumi (2012-11-01). “MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads” (英語). Nucleic Acids Research 40 (20): e155-e155. doi:10.1093/nar/gks678. ISSN 1362-4962. PMC 3488206. PMID 22821567.
Huson, D. H.; Mitra, S.; Ruscheweyh, H.-J.; Weber, N.; Schuster, S. C. (2011-09-01). “Integrative analysis of environmental sequences using MEGAN4” (英語). Genome Research 21 (9): 1552-1560. doi:10.1101/gr.120618.111. ISSN 1088-9051. PMC 3166839. PMID 21690186.
Zhu, Wenhan; Lomsadze, Alexandre; Borodovsky, Mark (2010-07). “Ab initio gene identification in metagenomic sequences” (英語). Nucleic Acids Research 38 (12): e132-e132. doi:10.1093/nar/gkq275. ISSN 1362-4962. PMC 2896542. PMID 20403810.
Hug, Laura A.; Baker, Brett J.; Anantharaman, Karthik; Brown, Christopher T.; Probst, Alexander J.; Castelle, Cindy J.; Butterfield, Cristina N.; Hernsdorf, Alex W. et al. (11 April 2016). “A new view of the tree of life”. Nature Microbiology 1 (5): 16048. doi:10.1038/nmicrobiol.2016.48. PMID 27572647.
Konopka, Allan (2009-11). “What is microbial community ecology?” (英語). The ISME Journal 3 (11): 1223-1230. doi:10.1038/ismej.2009.88. ISSN 1751-7362.
Huson, D. H.; Auch, A. F.; Qi, J.; Schuster, S. C. (2007-02-06). “MEGAN analysis of metagenomic data” (英語). Genome Research 17 (3): 377-386. doi:10.1101/gr.5969107. ISSN 1088-9051. PMC 1800929. PMID 17255551.
Segata, Nicola; Waldron, Levi; Ballarini, Annalisa; Narasimhan, Vagheesh; Jousson, Olivier; Huttenhower, Curtis (2012-08). “Metagenomic microbial community profiling using unique clade-specific marker genes” (英語). Nature Methods 9 (8): 811-814. doi:10.1038/nmeth.2066. ISSN 1548-7091. PMC 3443552. PMID 22688413.
Sunagawa, Shinichi; Mende, Daniel R; Zeller, Georg; Izquierdo-Carrasco, Fernando; Berger, Simon A; Kultima, Jens Roat; Coelho, Luis Pedro; Arumugam, Manimozhiyan et al. (2013-12). “Metagenomic species profiling using universal phylogenetic marker genes” (英語). Nature Methods 10 (12): 1196-1199. doi:10.1038/nmeth.2693. ISSN 1548-7091.
Milanese, Alessio; Mende, Daniel R; Paoli, Lucas; Salazar, Guillem; Ruscheweyh, Hans-Joachim; Cuenca, Miguelangel; Hingamp, Pascal; Alves, Renato et al. (2019-12). “Microbial abundance, activity and population genomic profiling with mOTUs2” (英語). Nature Communications 10 (1): 1014. doi:10.1038/s41467-019-08844-4. ISSN 2041-1723. PMC 6399450. PMID 30833550.
Liu, Bo; Gibbons, Theodore; Ghodsi, Mohammad; Treangen, Todd; Pop, Mihai (2011). “Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences” (英語). BMC Genomics 12 (Suppl 2): S4. doi:10.1186/1471-2164-12-S2-S4. ISSN 1471-2164. PMC 3194235. PMID 21989143.
Dadi, Temesgen Hailemariam; Renard, Bernhard Y.; Wieler, Lothar H.; Semmler, Torsten; Reinert, Knut (2017-03-28). “SLIMM: species level identification of microorganisms from metagenomes” (英語). PeerJ 5: e3138. doi:10.7717/peerj.3138. ISSN 2167-8359. PMC 5372838. PMID 28367376. https://peerj.com/articles/3138.
The New Science of Metagenomics: Revealing the Secrets of Our Microbial Planet. Washington, D.C.: National Academies Press. (2007-05-24). doi:10.17226/11902. ISBN 978-0-309-10676-4. http://www.nap.edu/catalog/11902
Pagani, I.; Liolios, K.; Jansson, J.; Chen, I.-M. A.; Smirnova, T.; Nosrat, B.; Markowitz, V. M.; Kyrpides, N. C. (2012-01-01). “The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata” (英語). Nucleic Acids Research 40 (D1): D571-D579. doi:10.1093/nar/gkr1100. ISSN 0305-1048. PMC 3245063. PMID 22135293.
Meyer, F; Paarmann, D; D'Souza, M; Olson, R; Glass, Em; Kubal, M; Paczian, T; Rodriguez, A et al. (2008-12). “The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes” (英語). BMC Bioinformatics 9 (1): 386. doi:10.1186/1471-2105-9-386. ISSN 1471-2105. PMC 2563014. PMID 18803844.
Markowitz, V. M.; Chen, I.-M. A.; Chu, K.; Szeto, E.; Palaniappan, K.; Grechkin, Y.; Ratner, A.; Jacob, B. et al. (2012-01-01). “IMG/M: the integrated metagenome data management and comparative analysis system” (英語). Nucleic Acids Research 40 (D1): D123-D129. doi:10.1093/nar/gkr975. ISSN 0305-1048. PMC 3245048. PMID 22086953.
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worldcat.org

今すぐ始める！メタゲノム解析実験プロトコール. Hattori, masahira., 服部, 正平. 羊土社. (2016). ISBN 978-4-7581-0197-4. OCLC 1089711913
Metagenomics : theory, methods, and applications. Marco, Diana.. Wymondham: Caister Academic Press. (2010). ISBN 978-1-904455-54-7. OCLC 351318426