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保存配列 (Japanese Wikipedia)

Analysis of information sources in references of the Wikipedia article "保存配列" in Japanese language version.

refsWebsite
Global rank Japanese rank
47doi.org
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11nih.gov
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2ebi.ac.uk
5,849th place
7,098th place
1mishima-kaiun.or.jp
low place
low place
1berkeley.edu
580th place
1,954th place
1stanford.edu
179th place
608th place
1cshl.edu
low place
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berkeley.edu

weblogo.berkeley.edu

  • “Weblogo”. UC Berkeley. 30 December 2017閲覧。

cshl.edu

compgen.cshl.edu

  • “PHAST: Home”. compgen.cshl.edu. 2018年10月29日閲覧。

doi.org

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  • Freyhult, E. K.; Bollback, J. P.; Gardner, P. P. (6 December 2006). “Exploring genomic dark matter: A critical assessment of the performance of homology search methods on noncoding RNA”. Genome Research 17 (1): 117–125. doi:10.1101/gr.5890907. PMC 1716261. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1716261/. 
  • Nawrocki, E. P.; Eddy, S. R. (4 September 2013). “Infernal 1.1: 100-fold faster RNA homology searches”. Bioinformatics 29 (22): 2933–2935. doi:10.1093/bioinformatics/btt509. PMC 3810854. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3810854/. 
  • Eddy, SR; Durbin, R (11 June 1994). “RNA sequence analysis using covariance models.”. Nucleic Acids Research 22 (11): 2079–88. doi:10.1093/nar/22.11.2079. PMC 308124. PMID 8029015. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC308124/. 
  • Earl, Dent; Nguyen, Ngan; Hickey, Glenn; Harris, Robert S.; Fitzgerald, Stephen; Beal, Kathryn; Seledtsov, Igor; Molodtsov, Vladimir et al. (December 2014). “Alignathon: a competitive assessment of whole-genome alignment methods”. Genome Research 24 (12): 2077–2089. doi:10.1101/gr.174920.114. 
  • Rouli, L.; Merhej, V.; Fournier, P.-E.; Raoult, D. (September 2015). “The bacterial pangenome as a new tool for analysing pathogenic bacteria”. New Microbes and New Infections 7: 72–85. doi:10.1016/j.nmni.2015.06.005. 
  • Méric, Guillaume; Yahara, Koji; Mageiros, Leonardos; Pascoe, Ben; Maiden, Martin C. J.; Jolley, Keith A.; Sheppard, Samuel K.; Bereswill, Stefan (27 March 2014). “A Reference Pan-Genome Approach to Comparative Bacterial Genomics: Identification of Novel Epidemiological Markers in Pathogenic Campylobacter”. PLoS ONE 9 (3): e92798. doi:10.1371/journal.pone.0092798. 
  • Cooper, G. M. (17 June 2005). “Distribution and intensity of constraint in mammalian genomic sequence”. Genome Research 15 (7): 901–913. doi:10.1101/gr.3577405. 
  • Pollard, K. S.; Hubisz, M. J.; Rosenbloom, K. R.; Siepel, A. (26 October 2009). “Detection of nonneutral substitution rates on mammalian phylogenies”. Genome Research 20 (1): 110–121. doi:10.1101/gr.097857.109. 
  • Fan, Xiaodan; Zhu, Jun; Schadt, Eric E; Liu, Jun S (2007). “Statistical power of phylo-HMM for evolutionarily conserved element detection”. BMC Bioinformatics 8 (1): 374. doi:10.1186/1471-2105-8-374. 
  • Bejerano, G. (28 May 2004). “Ultraconserved Elements in the Human Genome”. Science 304 (5675): 1321–1325. doi:10.1126/science.1098119. 
  • Siepel, A. (1 August 2005). “Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes”. Genome Research 15 (8): 1034–1050. doi:10.1101/gr.3715005. 
  • Harmston, N.; Baresic, A.; Lenhard, B. (11 November 2013). “The mystery of extreme non-coding conservation”. Philosophical Transactions of the Royal Society B: Biological Sciences 368 (1632): 20130021–20130021. doi:10.1098/rstb.2013.0021. 
  • Faircloth, B. C.; McCormack, J. E.; Crawford, N. G.; Harvey, M. G.; Brumfield, R. T.; Glenn, T. C. (9 January 2012). “Ultraconserved Elements Anchor Thousands of Genetic Markers Spanning Multiple Evolutionary Timescales”. Systematic Biology 61 (5): 717–726. doi:10.1093/sysbio/sys004. 
  • Faircloth, Brant C.; Branstetter, Michael G.; White, Noor D.; Brady, Seán G. (May 2015). “Target enrichment of ultraconserved elements from arthropods provides a genomic perspective on relationships among Hymenoptera”. Molecular Ecology Resources 15 (3): 489–501. doi:10.1111/1755-0998.12328. 
  • Reneker, J.; Lyons, E.; Conant, G. C.; Pires, J. C.; Freeling, M.; Shyu, C.-R.; Korkin, D. (10 April 2012). “Long identical multispecies elements in plant and animal genomes”. Proceedings of the National Academy of Sciences 109 (19): E1183–E1191. doi:10.1073/pnas.1121356109. 
  • Isenbarger, Thomas A.; Carr, Christopher E.; Johnson, Sarah Stewart; Finney, Michael; Church, George M.; Gilbert, Walter; Zuber, Maria T.; Ruvkun, Gary (14 October 2008). “The Most Conserved Genome Segments for Life Detection on Earth and Other Planets”. Origins of Life and Evolution of Biospheres 38 (6): 517–533. doi:10.1007/s11084-008-9148-z. 
  • Harris, J. K. (12 February 2003). “The Genetic Core of the Universal Ancestor”. Genome Research 13 (3): 407–412. doi:10.1101/gr.652803. 
  • Ban, Nenad; Beckmann, Roland; Cate, Jamie HD; Dinman, Jonathan D; Dragon, François; Ellis, Steven R; Lafontaine, Denis LJ; Lindahl, Lasse et al. (February 2014). “A new system for naming ribosomal proteins”. Current Opinion in Structural Biology 24: 165–169. doi:10.1016/j.sbi.2014.01.002. 
  • Gadagkar, Sudhindra R.; Rosenberg, Michael S.; Kumar, Sudhir (15 January 2005). “Inferring species phylogenies from multiple genes: Concatenated sequence tree versus consensus gene tree”. Journal of Experimental Zoology Part B: Molecular and Developmental Evolution 304B (1): 64–74. doi:10.1002/jez.b.21026. 
  • Ludwig, W; Schleifer, KH (October 1994). “Bacterial phylogeny based on 16S and 23S rRNA sequence analysis.”. FEMS Microbiology Reviews 15 (2–3): 155–73. doi:10.1111/j.1574-6976.1994.tb00132.x. PMID 7524576. 
  • Hug, Laura A.; Baker, Brett J.; Anantharaman, Karthik; Brown, Christopher T.; Probst, Alexander J.; Castelle, Cindy J.; Butterfield, Cristina N.; Hernsdorf, Alex W. et al. (11 April 2016). “A new view of the tree of life”. Nature Microbiology 1 (5): 16048. doi:10.1038/nmicrobiol.2016.48. 
  • Zhang, Liqing; Li, Wen-Hsiung (February 2004). “Mammalian Housekeeping Genes Evolve More Slowly than Tissue-Specific Genes”. Molecular Biology and Evolution 21 (2): 236–239. doi:10.1093/molbev/msh010. 
  • Clermont, O.; Bonacorsi, S.; Bingen, E. (1 October 2000). “Rapid and Simple Determination of the Escherichia coli Phylogenetic Group”. Applied and Environmental Microbiology 66 (10): 4555–4558. doi:10.1128/AEM.66.10.4555-4558.2000. 
  • Kullberg, Morgan; Nilsson, Maria A.; Arnason, Ulfur; Harley, Eric H.; Janke, Axel (August 2006). “Housekeeping Genes for Phylogenetic Analysis of Eutherian Relationships”. Molecular Biology and Evolution 23 (8): 1493–1503. doi:10.1093/molbev/msl027. 
  • Schoch, C. L.; Seifert, K. A.; Huhndorf, S.; Robert, V.; Spouge, J. L.; Levesque, C. A.; Chen, W.; Bolchacova, E. et al. (27 March 2012). “Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi”. Proceedings of the National Academy of Sciences 109 (16): 6241–6246. doi:10.1073/pnas.1117018109. 
  • Man, S. M.; Kaakoush, N. O.; Octavia, S.; Mitchell, H. (26 March 2010). “The Internal Transcribed Spacer Region, a New Tool for Use in Species Differentiation and Delineation of Systematic Relationships within the Campylobacter Genus”. Applied and Environmental Microbiology 76 (10): 3071–3081. doi:10.1128/AEM.02551-09. 
  • Ranjard, L.; Poly, F.; Lata, J.-C.; Mougel, C.; Thioulouse, J.; Nazaret, S. (1 October 2001). “Characterization of Bacterial and Fungal Soil Communities by Automated Ribosomal Intergenic Spacer Analysis Fingerprints: Biological and Methodological Variability”. Applied and Environmental Microbiology 67 (10): 4479–4487. doi:10.1128/AEM.67.10.4479-4487.2001. 
  • Bidet, Philippe; Barbut, Frédéric; Lalande, Valérie; Burghoffer, Béatrice; Petit, Jean-Claude (June 1999). “Development of a new PCR-ribotyping method for based on ribosomal RNA gene sequencing”. FEMS Microbiology Letters 175 (2): 261–266. doi:10.1111/j.1574-6968.1999.tb13629.x. 
  • Ala, Ugo; Piro, Rosario Michael; Grassi, Elena; Damasco, Christian; Silengo, Lorenzo; Oti, Martin; Provero, Paolo; Di Cunto, Ferdinando et al. (28 March 2008). “Prediction of Human Disease Genes by Human-Mouse Conserved Coexpression Analysis”. PLoS Computational Biology 4 (3): e1000043. doi:10.1371/journal.pcbi.1000043. 
  • Pandey, U. B.; Nichols, C. D. (17 March 2011). “Human Disease Models in Drosophila melanogaster and the Role of the Fly in Therapeutic Drug Discovery”. Pharmacological Reviews 63 (2): 411–436. doi:10.1124/pr.110.003293. 
  • Huang, Hui; Winter, Eitan E; Wang, Huajun; Weinstock, Keith G; Xing, Heming; Goodstadt, Leo; Stenson, Peter D; Cooper, David N et al. (2004). Genome Biology 5 (7): R47. doi:10.1186/gb-2004-5-7-r47. 
  • Ge, Dongliang; Fellay, Jacques; Thompson, Alexander J.; Simon, Jason S.; Shianna, Kevin V.; Urban, Thomas J.; Heinzen, Erin L.; Qiu, Ping et al. (16 August 2009). “Genetic variation in IL28B predicts hepatitis C treatment-induced viral clearance”. Nature 461 (7262): 399–401. doi:10.1038/nature08309. 
  • Bertram, L. (2009). “Genome-wide association studies in Alzheimer's disease”. Human Molecular Genetics 18: R137–R145. doi:10.1093/hmg/ddp406. 
  • Kellis, Manolis; Patterson, Nick; Endrizzi, Matthew; Birren, Bruce; Lander, Eric S. (15 May 2003). “Sequencing and comparison of yeast species to identify genes and regulatory elements”. Nature 423 (6937): 241–254. doi:10.1038/nature01644. 
  • Marchler-Bauer, A.; Lu, S.; Anderson, J. B.; Chitsaz, F.; Derbyshire, M. K.; DeWeese-Scott, C.; Fong, J. H.; Geer, L. Y. et al. (24 November 2010). “CDD: a Conserved Domain Database for the functional annotation of proteins”. Nucleic Acids Research 39 (Database): D225–D229. doi:10.1093/nar/gkq1189. 

ebi.ac.uk

mishima-kaiun.or.jp

nih.gov

ncbi.nlm.nih.gov

pubmed.ncbi.nlm.nih.gov

  • Kimura, M; Ohta, T (1974). “On Some Principles Governing Molecular Evolution”. Proc Natl Acad Sci USA 71 (7): 2848–2852. doi:10.1073/pnas.71.7.2848. PMC 388569. PMID 4527913. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC388569/pdf/pnas00060-0262.pdf. 
  • Eddy, SR; Durbin, R (11 June 1994). “RNA sequence analysis using covariance models.”. Nucleic Acids Research 22 (11): 2079–88. doi:10.1093/nar/22.11.2079. PMC 308124. PMID 8029015. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC308124/. 
  • Ludwig, W; Schleifer, KH (October 1994). “Bacterial phylogeny based on 16S and 23S rRNA sequence analysis.”. FEMS Microbiology Reviews 15 (2–3): 155–73. doi:10.1111/j.1574-6976.1994.tb00132.x. PMID 7524576. 

stanford.edu

mendel.stanford.edu