核酸の二次構造 (Japanese Wikipedia)

Analysis of information sources in references of the Wikipedia article "核酸の二次構造" in Japanese language version.

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arxiv.org

“A dynamic programming algorithm for RNA structure prediction including pseudoknots”. J Mol Biol 285 (5): 2053–2068. (1999). arXiv:physics/9807048. doi:10.1006/jmbi.1998.2436. PMID 9925784.

doi.org

Dirks, Robert M.; Lin, Milo; Winfree, Erik & Pierce, Niles A. (2004). “Paradigms for computational nucleic acid design”. Nucleic Acids Research 32 (4): 1392–1403. doi:10.1093/nar/gkh291. PMC 390280. PMID 14990744.
Yakovchuk, Peter; Protozanova, Ekaterina; Frank-Kamenetskii, Maxim D. (2006). “Base-stacking and base-pairing contributions into thermal stability of the DNA double helix”. Nucleic Acids Research 34 (2): 564–574. doi:10.1093/nar/gkj454. PMC 1360284. PMID 16449200.
“Predicting DNA duplex stability from the base sequence”. PNAS 83 (11): 3746–3750. (1986). Bibcode: 1986PNAS...83.3746B. doi:10.1073/pnas.83.11.3746. PMC 323600. PMID 3459152.
“Protein-DNA recognition”. Annu Rev Biochem 53: 293–321. (1984). doi:10.1146/annurev.bi.53.070184.001453. PMID 6236744.
“Functional analysis of the pseudoknot structure in human telomerase RNA”. Proc Natl Acad Sci USA 102 (23): 8080–5. (2005). Bibcode: 2005PNAS..102.8080C. doi:10.1073/pnas.0502259102. PMC 1149427. PMID 15849264.
“A dynamic programming algorithm for RNA structure prediction including pseudoknots”. J Mol Biol 285 (5): 2053–2068. (1999). arXiv:physics/9807048. doi:10.1006/jmbi.1998.2436. PMID 9925784.
Staple, David W.; Butcher, Samuel E. (2005-06-14). “Pseudoknots: RNA Structures with Diverse Functions”. PLOS Biol 3 (6): e213. doi:10.1371/journal.pbio.0030213. ISSN 1545-7885. PMC 1149493. PMID 15941360.
Doudna, Jennifer A.; Ferré-D'Amaré, Adrian R.; Zhou, Kaihong (October 1998). “Crystal structure of a hepatitis delta virus ribozyme”. Nature 395 (6702): 567–574. Bibcode: 1998Natur.395..567F. doi:10.1038/26912. PMID 9783582.
Lai, Michael M. C. (1995-06-01). “The Molecular Biology of Hepatitis Delta Virus”. Annual Review of Biochemistry 64 (1): 259–286. doi:10.1146/annurev.bi.64.070195.001355. ISSN 0066-4154. PMID 7574482.
“Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs”. Biochemistry 37 (42): 14719–35. (October 1998). doi:10.1021/bi9809425. PMID 9778347.
“Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure”. PNAS 101 (19): 7287–92. (May 2004). Bibcode: 2004PNAS..101.7287M. doi:10.1073/pnas.0401799101. PMC 409911. PMID 15123812.
Zuker, M. (1989-04-07). “On finding all suboptimal foldings of an RNA molecule” (英語). Science 244 (4900): 48–52. Bibcode: 1989Sci...244...48Z. doi:10.1126/science.2468181. ISSN 0036-8075. PMID 2468181.
Lin, Chien-Ling; Taggart, Allison J.; Lim, Kian Huat; Cygan, Kamil J.; Ferraris, Luciana; Creton, Robert; Huang, Yen-Tsung; Fairbrother, William G. (13 November 2015). “RNA structure replaces the need for U2AF2 in splicing”. Genome Research 26 (1): 12–23. doi:10.1101/gr.181008.114. PMC 4691745. PMID 26566657.
Lu, XJ; Bussemaker, HJ; Olson, WK (2 December 2015). “DSSR: an integrated software tool for dissecting the spatial structure of RNA.”. Nucleic Acids Research 43 (21): e142. doi:10.1093/nar/gkv716. PMC 4666379. PMID 26184874.
Lemieux, Sébastien; Major, François (2002-10-01). “RNA canonical and non-canonical base pairing types: a recognition method and complete repertoire”. Nucleic Acids Research 30 (19): 4250–4263. doi:10.1093/nar/gkf540. ISSN 1362-4962. PMC 140540. PMID 12364604.

harvard.edu

ui.adsabs.harvard.edu

“Predicting DNA duplex stability from the base sequence”. PNAS 83 (11): 3746–3750. (1986). Bibcode: 1986PNAS...83.3746B. doi:10.1073/pnas.83.11.3746. PMC 323600. PMID 3459152.
“Functional analysis of the pseudoknot structure in human telomerase RNA”. Proc Natl Acad Sci USA 102 (23): 8080–5. (2005). Bibcode: 2005PNAS..102.8080C. doi:10.1073/pnas.0502259102. PMC 1149427. PMID 15849264.
Doudna, Jennifer A.; Ferré-D'Amaré, Adrian R.; Zhou, Kaihong (October 1998). “Crystal structure of a hepatitis delta virus ribozyme”. Nature 395 (6702): 567–574. Bibcode: 1998Natur.395..567F. doi:10.1038/26912. PMID 9783582.
“Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure”. PNAS 101 (19): 7287–92. (May 2004). Bibcode: 2004PNAS..101.7287M. doi:10.1073/pnas.0401799101. PMC 409911. PMID 15123812.
Zuker, M. (1989-04-07). “On finding all suboptimal foldings of an RNA molecule” (英語). Science 244 (4900): 48–52. Bibcode: 1989Sci...244...48Z. doi:10.1126/science.2468181. ISSN 0036-8075. PMID 2468181.

nih.gov

pubmed.ncbi.nlm.nih.gov

Dirks, Robert M.; Lin, Milo; Winfree, Erik & Pierce, Niles A. (2004). “Paradigms for computational nucleic acid design”. Nucleic Acids Research 32 (4): 1392–1403. doi:10.1093/nar/gkh291. PMC 390280. PMID 14990744.
Yakovchuk, Peter; Protozanova, Ekaterina; Frank-Kamenetskii, Maxim D. (2006). “Base-stacking and base-pairing contributions into thermal stability of the DNA double helix”. Nucleic Acids Research 34 (2): 564–574. doi:10.1093/nar/gkj454. PMC 1360284. PMID 16449200.
“Predicting DNA duplex stability from the base sequence”. PNAS 83 (11): 3746–3750. (1986). Bibcode: 1986PNAS...83.3746B. doi:10.1073/pnas.83.11.3746. PMC 323600. PMID 3459152.
“Protein-DNA recognition”. Annu Rev Biochem 53: 293–321. (1984). doi:10.1146/annurev.bi.53.070184.001453. PMID 6236744.
“Functional analysis of the pseudoknot structure in human telomerase RNA”. Proc Natl Acad Sci USA 102 (23): 8080–5. (2005). Bibcode: 2005PNAS..102.8080C. doi:10.1073/pnas.0502259102. PMC 1149427. PMID 15849264.
“A dynamic programming algorithm for RNA structure prediction including pseudoknots”. J Mol Biol 285 (5): 2053–2068. (1999). arXiv:physics/9807048. doi:10.1006/jmbi.1998.2436. PMID 9925784.
Staple, David W.; Butcher, Samuel E. (2005-06-14). “Pseudoknots: RNA Structures with Diverse Functions”. PLOS Biol 3 (6): e213. doi:10.1371/journal.pbio.0030213. ISSN 1545-7885. PMC 1149493. PMID 15941360.
Doudna, Jennifer A.; Ferré-D'Amaré, Adrian R.; Zhou, Kaihong (October 1998). “Crystal structure of a hepatitis delta virus ribozyme”. Nature 395 (6702): 567–574. Bibcode: 1998Natur.395..567F. doi:10.1038/26912. PMID 9783582.
Lai, Michael M. C. (1995-06-01). “The Molecular Biology of Hepatitis Delta Virus”. Annual Review of Biochemistry 64 (1): 259–286. doi:10.1146/annurev.bi.64.070195.001355. ISSN 0066-4154. PMID 7574482.
“Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs”. Biochemistry 37 (42): 14719–35. (October 1998). doi:10.1021/bi9809425. PMID 9778347.
“Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure”. PNAS 101 (19): 7287–92. (May 2004). Bibcode: 2004PNAS..101.7287M. doi:10.1073/pnas.0401799101. PMC 409911. PMID 15123812.
Zuker, M. (1989-04-07). “On finding all suboptimal foldings of an RNA molecule” (英語). Science 244 (4900): 48–52. Bibcode: 1989Sci...244...48Z. doi:10.1126/science.2468181. ISSN 0036-8075. PMID 2468181.
Lin, Chien-Ling; Taggart, Allison J.; Lim, Kian Huat; Cygan, Kamil J.; Ferraris, Luciana; Creton, Robert; Huang, Yen-Tsung; Fairbrother, William G. (13 November 2015). “RNA structure replaces the need for U2AF2 in splicing”. Genome Research 26 (1): 12–23. doi:10.1101/gr.181008.114. PMC 4691745. PMID 26566657.
Lu, XJ; Bussemaker, HJ; Olson, WK (2 December 2015). “DSSR: an integrated software tool for dissecting the spatial structure of RNA.”. Nucleic Acids Research 43 (21): e142. doi:10.1093/nar/gkv716. PMC 4666379. PMID 26184874.
Lemieux, Sébastien; Major, François (2002-10-01). “RNA canonical and non-canonical base pairing types: a recognition method and complete repertoire”. Nucleic Acids Research 30 (19): 4250–4263. doi:10.1093/nar/gkf540. ISSN 1362-4962. PMC 140540. PMID 12364604.

ncbi.nlm.nih.gov

Dirks, Robert M.; Lin, Milo; Winfree, Erik & Pierce, Niles A. (2004). “Paradigms for computational nucleic acid design”. Nucleic Acids Research 32 (4): 1392–1403. doi:10.1093/nar/gkh291. PMC 390280. PMID 14990744.
Yakovchuk, Peter; Protozanova, Ekaterina; Frank-Kamenetskii, Maxim D. (2006). “Base-stacking and base-pairing contributions into thermal stability of the DNA double helix”. Nucleic Acids Research 34 (2): 564–574. doi:10.1093/nar/gkj454. PMC 1360284. PMID 16449200.
“Predicting DNA duplex stability from the base sequence”. PNAS 83 (11): 3746–3750. (1986). Bibcode: 1986PNAS...83.3746B. doi:10.1073/pnas.83.11.3746. PMC 323600. PMID 3459152.
“Functional analysis of the pseudoknot structure in human telomerase RNA”. Proc Natl Acad Sci USA 102 (23): 8080–5. (2005). Bibcode: 2005PNAS..102.8080C. doi:10.1073/pnas.0502259102. PMC 1149427. PMID 15849264.
Staple, David W.; Butcher, Samuel E. (2005-06-14). “Pseudoknots: RNA Structures with Diverse Functions”. PLOS Biol 3 (6): e213. doi:10.1371/journal.pbio.0030213. ISSN 1545-7885. PMC 1149493. PMID 15941360.
“Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure”. PNAS 101 (19): 7287–92. (May 2004). Bibcode: 2004PNAS..101.7287M. doi:10.1073/pnas.0401799101. PMC 409911. PMID 15123812.
Lin, Chien-Ling; Taggart, Allison J.; Lim, Kian Huat; Cygan, Kamil J.; Ferraris, Luciana; Creton, Robert; Huang, Yen-Tsung; Fairbrother, William G. (13 November 2015). “RNA structure replaces the need for U2AF2 in splicing”. Genome Research 26 (1): 12–23. doi:10.1101/gr.181008.114. PMC 4691745. PMID 26566657.
Lu, XJ; Bussemaker, HJ; Olson, WK (2 December 2015). “DSSR: an integrated software tool for dissecting the spatial structure of RNA.”. Nucleic Acids Research 43 (21): e142. doi:10.1093/nar/gkv716. PMC 4666379. PMID 26184874.
Lemieux, Sébastien; Major, François (2002-10-01). “RNA canonical and non-canonical base pairing types: a recognition method and complete repertoire”. Nucleic Acids Research 30 (19): 4250–4263. doi:10.1093/nar/gkf540. ISSN 1362-4962. PMC 140540. PMID 12364604.

pmc.ncbi.nlm.nih.gov

Dirks, Robert M.; Lin, Milo; Winfree, Erik & Pierce, Niles A. (2004). “Paradigms for computational nucleic acid design”. Nucleic Acids Research 32 (4): 1392–1403. doi:10.1093/nar/gkh291. PMC 390280. PMID 14990744.
Yakovchuk, Peter; Protozanova, Ekaterina; Frank-Kamenetskii, Maxim D. (2006). “Base-stacking and base-pairing contributions into thermal stability of the DNA double helix”. Nucleic Acids Research 34 (2): 564–574. doi:10.1093/nar/gkj454. PMC 1360284. PMID 16449200.
“Predicting DNA duplex stability from the base sequence”. PNAS 83 (11): 3746–3750. (1986). Bibcode: 1986PNAS...83.3746B. doi:10.1073/pnas.83.11.3746. PMC 323600. PMID 3459152.
“Functional analysis of the pseudoknot structure in human telomerase RNA”. Proc Natl Acad Sci USA 102 (23): 8080–5. (2005). Bibcode: 2005PNAS..102.8080C. doi:10.1073/pnas.0502259102. PMC 1149427. PMID 15849264.
Staple, David W.; Butcher, Samuel E. (2005-06-14). “Pseudoknots: RNA Structures with Diverse Functions”. PLOS Biol 3 (6): e213. doi:10.1371/journal.pbio.0030213. ISSN 1545-7885. PMC 1149493. PMID 15941360.
“Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure”. PNAS 101 (19): 7287–92. (May 2004). Bibcode: 2004PNAS..101.7287M. doi:10.1073/pnas.0401799101. PMC 409911. PMID 15123812.
Lin, Chien-Ling; Taggart, Allison J.; Lim, Kian Huat; Cygan, Kamil J.; Ferraris, Luciana; Creton, Robert; Huang, Yen-Tsung; Fairbrother, William G. (13 November 2015). “RNA structure replaces the need for U2AF2 in splicing”. Genome Research 26 (1): 12–23. doi:10.1101/gr.181008.114. PMC 4691745. PMID 26566657.
Lu, XJ; Bussemaker, HJ; Olson, WK (2 December 2015). “DSSR: an integrated software tool for dissecting the spatial structure of RNA.”. Nucleic Acids Research 43 (21): e142. doi:10.1093/nar/gkv716. PMC 4666379. PMID 26184874.
Lemieux, Sébastien; Major, François (2002-10-01). “RNA canonical and non-canonical base pairing types: a recognition method and complete repertoire”. Nucleic Acids Research 30 (19): 4250–4263. doi:10.1093/nar/gkf540. ISSN 1362-4962. PMC 140540. PMID 12364604.

owczarzy.net

Richard Owczarzy (2008年8月28日). “DNA melting temperature - How to calculate it?”. High-throughput DNA biophysics. owczarzy.net. 2008年10月2日閲覧。

worldcat.org

search.worldcat.org

Staple, David W.; Butcher, Samuel E. (2005-06-14). “Pseudoknots: RNA Structures with Diverse Functions”. PLOS Biol 3 (6): e213. doi:10.1371/journal.pbio.0030213. ISSN 1545-7885. PMC 1149493. PMID 15941360.
Lai, Michael M. C. (1995-06-01). “The Molecular Biology of Hepatitis Delta Virus”. Annual Review of Biochemistry 64 (1): 259–286. doi:10.1146/annurev.bi.64.070195.001355. ISSN 0066-4154. PMID 7574482.
Zuker, M. (1989-04-07). “On finding all suboptimal foldings of an RNA molecule” (英語). Science 244 (4900): 48–52. Bibcode: 1989Sci...244...48Z. doi:10.1126/science.2468181. ISSN 0036-8075. PMID 2468181.
Lemieux, Sébastien; Major, François (2002-10-01). “RNA canonical and non-canonical base pairing types: a recognition method and complete repertoire”. Nucleic Acids Research 30 (19): 4250–4263. doi:10.1093/nar/gkf540. ISSN 1362-4962. PMC 140540. PMID 12364604.