Harrison PM, Gerstein M (May 2002). “Studying genomes through the aeons: protein families, pseudogenes and proteome evolution”. Journal of Molecular Biology318 (5): 1155–74. doi:10.1016/S0022-2836(02)00109-2. PMID12083509.
Long M, Betrán E, Thornton K, Wang W (November 2003). “The origin of new genes: glimpses from the young and old”. Nature Reviews. Genetics4 (11): 865–75. doi:10.1038/nrg1204. PMID14634634.
Wang M, Caetano-Anollés G (January 2009). “The evolutionary mechanics of domain organization in proteomes and the rise of modularity in the protein world”. Structure17 (1): 66–78. doi:10.1016/j.str.2008.11.008. PMID19141283.
Hurst GD, Werren JH (August 2001). “The role of selfish genetic elements in eukaryotic evolution”. Nature Reviews Genetics2 (8): 597–606. doi:10.1038/35084545. PMID11483984.
Slocombe L, Al-Khalili JS, Sacchi M (February 2021). “Quantum and classical effects in DNA point mutations: Watson-Crick tautomerism in AT and GC base pairs”. Physical Chemistry Chemical Physics23 (7): 4141–4150. Bibcode: 2021PCCP...23.4141S. doi:10.1039/D0CP05781A. ISSN1463-9076. PMID33533770.
Pfohl-Leszkowicz A, Manderville RA (January 2007). “Ochratoxin A: An overview on toxicity and carcinogenicity in animals and humans”. Molecular Nutrition & Food Research51 (1): 61–99. doi:10.1002/mnfr.200600137. PMID17195275.
Freese E (June 1959). “The specific mutagenic effect of base analogues on Phage T4”. Journal of Molecular Biology1 (2): 87–105. doi:10.1016/S0022-2836(59)80038-3.
Boillée S, Vande Velde C, Cleveland DW (October 2006). “ALS: a disease of motor neurons and their nonneuronal neighbors”. Neuron52 (1): 39–59. doi:10.1016/j.neuron.2006.09.018. PMID17015226.
Ellis NA, Ciocci S, German J (February 2001). “Back mutation can produce phenotype reversion in Bloom syndrome somatic cells”. Human Genetics108 (2): 167–73. doi:10.1007/s004390000447. PMID11281456.
Loewe L (April 2006). “Quantifying the genomic decay paradox due to Muller's ratchet in human mitochondrial DNA”. Genetical Research87 (2): 133–59. doi:10.1017/S0016672306008123. PMID16709275.
Elena SF, Ekunwe L, Hajela N, Oden SA, Lenski RE (March 1998). “Distribution of fitness effects caused by random insertion mutations in Escherichia coli”. Genetica102–103 (1–6): 349–58. doi:10.1023/A:1017031008316. PMID9720287.
Sawyer SA, Kulathinal RJ, Bustamante CD, Hartl DL (August 2003). “Bayesian analysis suggests that most amino acid replacements in Drosophila are driven by positive selection”. Journal of Molecular Evolution57 (1): S154–64. Bibcode: 2003JMolE..57S.154S. doi:10.1007/s00239-003-0022-3. PMID15008412.
Akashi H (September 1999). “Within- and between-species DNA sequence variation and the 'footprint' of natural selection”. Gene238 (1): 39–51. doi:10.1016/S0378-1119(99)00294-2. PMID10570982.
Kassen R, Bataillon T (April 2006). “Distribution of fitness effects among beneficial mutations before selection in experimental populations of bacteria”. Nature Genetics38 (4): 484–8. doi:10.1038/ng1751. PMID16550173.
Rokyta DR, Joyce P, Caudle SB, Wichman HA (April 2005). “An empirical test of the mutational landscape model of adaptation using a single-stranded DNA virus”. Nature Genetics37 (4): 441–4. doi:10.1038/ng1535. PMID15778707.
Chadov BF, Fedorova NB, Chadova EV (1 July 2015). “Conditional mutations in Drosophila melanogaster: On the occasion of the 150th anniversary of G. Mendel's report in Brünn”. Mutation Research/Reviews in Mutation Research765: 40–55. Bibcode: 2015MRRMR.765...40C. doi:10.1016/j.mrrev.2015.06.001. PMID26281767.
Jónsson H, Sulem P, Kehr B, Kristmundsdottir S, Zink F, Hjartarson E, Hardarson MT, Hjorleifsson KE, Eggertsson HP, Gudjonsson SA, Ward LD, Arnadottir GA, Helgason EA, Helgason H, Gylfason A, Jonasdottir A, Jonasdottir A, Rafnar T, Frigge M, Stacey SN, Th Magnusson O, Thorsteinsdottir U, Masson G, Kong A, Halldorsson BV, Helgason A, Gudbjartsson DF, Stefansson K (September 2017). “Parental influence on human germline de novo mutations in 1,548 trios from Iceland”. Nature549 (7673): 519–522. Bibcode: 2017Natur.549..519J. doi:10.1038/nature24018. PMID28959963.
Bartlett, J. (2023). “Random with Respect to Fitness or External Selection? An Important but Often Overlooked Distinction”. Acta Biotheoretica71 (2). doi:10.1007/s10441-023-09464-8. PMID36933070.
DePristo, Mark A.; Weinreich, Daniel M.; Hartl, Daniel L. (September 2005). “Missense meanderings in sequence space: a biophysical view of protein evolution”. Nature Reviews. Genetics6 (9): 678–687. doi:10.1038/nrg1672. ISSN1471-0056. PMID16074985.
Gagneux, Sebastien; Long, Clara Davis; Small, Peter M.; Van, Tran; Schoolnik, Gary K.; Bohannan, Brendan J. M. (30 June 2006). “The competitive cost of antibiotic resistance in Mycobacterium tuberculosis”. Science312 (5782): 1944–1946. Bibcode: 2006Sci...312.1944G. doi:10.1126/science.1124410. ISSN1095-9203. PMID16809538.
Rimmelzwaan, G. F.; Berkhoff, E. G. M.; Nieuwkoop, N. J.; Smith, D. J.; Fouchier, R. A. M.; Osterhaus, A. D. M. E.YR 2005 (2005). “Full restoration of viral fitness by multiple compensatory co-mutations in the nucleoprotein of influenza A virus cytotoxic T-lymphocyte escape mutants”. Journal of General Virology86 (6): 1801–1805. doi:10.1099/vir.0.80867-0. hdl:1765/8466. ISSN1465-2099. PMID15914859.
Rimmelzwaan, G. F.; Berkhoff, E. G. M.; Nieuwkoop, N. J.; Smith, D. J.; Fouchier, R. A. M.; Osterhaus, A. D. M. E.YR 2005 (2005). “Full restoration of viral fitness by multiple compensatory co-mutations in the nucleoprotein of influenza A virus cytotoxic T-lymphocyte escape mutants”. Journal of General Virology86 (6): 1801–1805. doi:10.1099/vir.0.80867-0. hdl:1765/8466. ISSN1465-2099. PMID15914859.
Slocombe L, Al-Khalili JS, Sacchi M (February 2021). “Quantum and classical effects in DNA point mutations: Watson-Crick tautomerism in AT and GC base pairs”. Physical Chemistry Chemical Physics23 (7): 4141–4150. Bibcode: 2021PCCP...23.4141S. doi:10.1039/D0CP05781A. ISSN1463-9076. PMID33533770.
Sawyer SA, Kulathinal RJ, Bustamante CD, Hartl DL (August 2003). “Bayesian analysis suggests that most amino acid replacements in Drosophila are driven by positive selection”. Journal of Molecular Evolution57 (1): S154–64. Bibcode: 2003JMolE..57S.154S. doi:10.1007/s00239-003-0022-3. PMID15008412.
Chadov BF, Fedorova NB, Chadova EV (1 July 2015). “Conditional mutations in Drosophila melanogaster: On the occasion of the 150th anniversary of G. Mendel's report in Brünn”. Mutation Research/Reviews in Mutation Research765: 40–55. Bibcode: 2015MRRMR.765...40C. doi:10.1016/j.mrrev.2015.06.001. PMID26281767.
Jónsson H, Sulem P, Kehr B, Kristmundsdottir S, Zink F, Hjartarson E, Hardarson MT, Hjorleifsson KE, Eggertsson HP, Gudjonsson SA, Ward LD, Arnadottir GA, Helgason EA, Helgason H, Gylfason A, Jonasdottir A, Jonasdottir A, Rafnar T, Frigge M, Stacey SN, Th Magnusson O, Thorsteinsdottir U, Masson G, Kong A, Halldorsson BV, Helgason A, Gudbjartsson DF, Stefansson K (September 2017). “Parental influence on human germline de novo mutations in 1,548 trios from Iceland”. Nature549 (7673): 519–522. Bibcode: 2017Natur.549..519J. doi:10.1038/nature24018. PMID28959963.
Gagneux, Sebastien; Long, Clara Davis; Small, Peter M.; Van, Tran; Schoolnik, Gary K.; Bohannan, Brendan J. M. (30 June 2006). “The competitive cost of antibiotic resistance in Mycobacterium tuberculosis”. Science312 (5782): 1944–1946. Bibcode: 2006Sci...312.1944G. doi:10.1126/science.1124410. ISSN1095-9203. PMID16809538.
Harrison PM, Gerstein M (May 2002). “Studying genomes through the aeons: protein families, pseudogenes and proteome evolution”. Journal of Molecular Biology318 (5): 1155–74. doi:10.1016/S0022-2836(02)00109-2. PMID12083509.
Long M, Betrán E, Thornton K, Wang W (November 2003). “The origin of new genes: glimpses from the young and old”. Nature Reviews. Genetics4 (11): 865–75. doi:10.1038/nrg1204. PMID14634634.
Wang M, Caetano-Anollés G (January 2009). “The evolutionary mechanics of domain organization in proteomes and the rise of modularity in the protein world”. Structure17 (1): 66–78. doi:10.1016/j.str.2008.11.008. PMID19141283.
Hurst GD, Werren JH (August 2001). “The role of selfish genetic elements in eukaryotic evolution”. Nature Reviews Genetics2 (8): 597–606. doi:10.1038/35084545. PMID11483984.
Slocombe L, Al-Khalili JS, Sacchi M (February 2021). “Quantum and classical effects in DNA point mutations: Watson-Crick tautomerism in AT and GC base pairs”. Physical Chemistry Chemical Physics23 (7): 4141–4150. Bibcode: 2021PCCP...23.4141S. doi:10.1039/D0CP05781A. ISSN1463-9076. PMID33533770.
Pfohl-Leszkowicz A, Manderville RA (January 2007). “Ochratoxin A: An overview on toxicity and carcinogenicity in animals and humans”. Molecular Nutrition & Food Research51 (1): 61–99. doi:10.1002/mnfr.200600137. PMID17195275.
Boillée S, Vande Velde C, Cleveland DW (October 2006). “ALS: a disease of motor neurons and their nonneuronal neighbors”. Neuron52 (1): 39–59. doi:10.1016/j.neuron.2006.09.018. PMID17015226.
Ellis NA, Ciocci S, German J (February 2001). “Back mutation can produce phenotype reversion in Bloom syndrome somatic cells”. Human Genetics108 (2): 167–73. doi:10.1007/s004390000447. PMID11281456.
Loewe L (April 2006). “Quantifying the genomic decay paradox due to Muller's ratchet in human mitochondrial DNA”. Genetical Research87 (2): 133–59. doi:10.1017/S0016672306008123. PMID16709275.
Elena SF, Ekunwe L, Hajela N, Oden SA, Lenski RE (March 1998). “Distribution of fitness effects caused by random insertion mutations in Escherichia coli”. Genetica102–103 (1–6): 349–58. doi:10.1023/A:1017031008316. PMID9720287.
Sawyer SA, Kulathinal RJ, Bustamante CD, Hartl DL (August 2003). “Bayesian analysis suggests that most amino acid replacements in Drosophila are driven by positive selection”. Journal of Molecular Evolution57 (1): S154–64. Bibcode: 2003JMolE..57S.154S. doi:10.1007/s00239-003-0022-3. PMID15008412.
Akashi H (September 1999). “Within- and between-species DNA sequence variation and the 'footprint' of natural selection”. Gene238 (1): 39–51. doi:10.1016/S0378-1119(99)00294-2. PMID10570982.
Kassen R, Bataillon T (April 2006). “Distribution of fitness effects among beneficial mutations before selection in experimental populations of bacteria”. Nature Genetics38 (4): 484–8. doi:10.1038/ng1751. PMID16550173.
Rokyta DR, Joyce P, Caudle SB, Wichman HA (April 2005). “An empirical test of the mutational landscape model of adaptation using a single-stranded DNA virus”. Nature Genetics37 (4): 441–4. doi:10.1038/ng1535. PMID15778707.
Chadov BF, Fedorova NB, Chadova EV (1 July 2015). “Conditional mutations in Drosophila melanogaster: On the occasion of the 150th anniversary of G. Mendel's report in Brünn”. Mutation Research/Reviews in Mutation Research765: 40–55. Bibcode: 2015MRRMR.765...40C. doi:10.1016/j.mrrev.2015.06.001. PMID26281767.
Jónsson H, Sulem P, Kehr B, Kristmundsdottir S, Zink F, Hjartarson E, Hardarson MT, Hjorleifsson KE, Eggertsson HP, Gudjonsson SA, Ward LD, Arnadottir GA, Helgason EA, Helgason H, Gylfason A, Jonasdottir A, Jonasdottir A, Rafnar T, Frigge M, Stacey SN, Th Magnusson O, Thorsteinsdottir U, Masson G, Kong A, Halldorsson BV, Helgason A, Gudbjartsson DF, Stefansson K (September 2017). “Parental influence on human germline de novo mutations in 1,548 trios from Iceland”. Nature549 (7673): 519–522. Bibcode: 2017Natur.549..519J. doi:10.1038/nature24018. PMID28959963.
Bartlett, J. (2023). “Random with Respect to Fitness or External Selection? An Important but Often Overlooked Distinction”. Acta Biotheoretica71 (2). doi:10.1007/s10441-023-09464-8. PMID36933070.
DePristo, Mark A.; Weinreich, Daniel M.; Hartl, Daniel L. (September 2005). “Missense meanderings in sequence space: a biophysical view of protein evolution”. Nature Reviews. Genetics6 (9): 678–687. doi:10.1038/nrg1672. ISSN1471-0056. PMID16074985.
Gagneux, Sebastien; Long, Clara Davis; Small, Peter M.; Van, Tran; Schoolnik, Gary K.; Bohannan, Brendan J. M. (30 June 2006). “The competitive cost of antibiotic resistance in Mycobacterium tuberculosis”. Science312 (5782): 1944–1946. Bibcode: 2006Sci...312.1944G. doi:10.1126/science.1124410. ISSN1095-9203. PMID16809538.
Rimmelzwaan, G. F.; Berkhoff, E. G. M.; Nieuwkoop, N. J.; Smith, D. J.; Fouchier, R. A. M.; Osterhaus, A. D. M. E.YR 2005 (2005). “Full restoration of viral fitness by multiple compensatory co-mutations in the nucleoprotein of influenza A virus cytotoxic T-lymphocyte escape mutants”. Journal of General Virology86 (6): 1801–1805. doi:10.1099/vir.0.80867-0. hdl:1765/8466. ISSN1465-2099. PMID15914859.
Slocombe L, Al-Khalili JS, Sacchi M (February 2021). “Quantum and classical effects in DNA point mutations: Watson-Crick tautomerism in AT and GC base pairs”. Physical Chemistry Chemical Physics23 (7): 4141–4150. Bibcode: 2021PCCP...23.4141S. doi:10.1039/D0CP05781A. ISSN1463-9076. PMID33533770.
DePristo, Mark A.; Weinreich, Daniel M.; Hartl, Daniel L. (September 2005). “Missense meanderings in sequence space: a biophysical view of protein evolution”. Nature Reviews. Genetics6 (9): 678–687. doi:10.1038/nrg1672. ISSN1471-0056. PMID16074985.
Gagneux, Sebastien; Long, Clara Davis; Small, Peter M.; Van, Tran; Schoolnik, Gary K.; Bohannan, Brendan J. M. (30 June 2006). “The competitive cost of antibiotic resistance in Mycobacterium tuberculosis”. Science312 (5782): 1944–1946. Bibcode: 2006Sci...312.1944G. doi:10.1126/science.1124410. ISSN1095-9203. PMID16809538.
Rimmelzwaan, G. F.; Berkhoff, E. G. M.; Nieuwkoop, N. J.; Smith, D. J.; Fouchier, R. A. M.; Osterhaus, A. D. M. E.YR 2005 (2005). “Full restoration of viral fitness by multiple compensatory co-mutations in the nucleoprotein of influenza A virus cytotoxic T-lymphocyte escape mutants”. Journal of General Virology86 (6): 1801–1805. doi:10.1099/vir.0.80867-0. hdl:1765/8466. ISSN1465-2099. PMID15914859.
