코돈 사용빈도 편향 (Korean Wikipedia)

Analysis of information sources in references of the Wikipedia article "코돈 사용빈도 편향" in Korean language version.

refsWebsite

Global rank Korean rank

18nih.gov

4^th place

17doi.org

2^nd place

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5worldcat.org

5^th place

11^th place

2semanticscholar.org

11^th place

310^th place

1pnas.org

1,293^rd place

613^th place

1harvard.edu

18^th place

27^th place

1oxfordjournals.org

1,389^th place

550^th place

1sourceforge.net

1,669^th place

653^rd place

doi.org

dx.doi.org

Athey, John; Alexaki, Aikaterini; Osipova, Ekaterina; Rostovtsev, Alexandre; Santana-Quintero, Luis V.; Katneni, Upendra; Simonyan, Vahan; Kimchi-Sarfaty, Chava (2017년 9월 2일). “A new and updated resource for codon usage tables”. 《BMC Bioinformatics》 18 (391): 391. doi:10.1186/s12859-017-1793-7. PMC 5581930. PMID 28865429.
Alexaki, Aikaterini; Kames, Jacob; Holcomb, David D.; Athey, John; Santana-Quintero, Luis V.; Lam, Phuc Vihn Nguyen; Hamasaki-Katagiri, Nobuko; Osipova, Ekaterina; Simonyan, Vahan; Bar, Haim; Komar, Anton A.; Kimchi-Sarfaty, Chava (June 2019). “Codon and Codon-Pair Usage Tables (CoCoPUTs): Facilitating Genetic Variation Analyses and Recombinant Gene Design”. 《Journal of Molecular Biology》 431 (13): 2434–2441. doi:10.1016/j.jmb.2019.04.021. PMID 31029701.
Kames, Jacob; Alexaki, Aikaterini; Holcomb, David D.; Santana-Quintero, Luis V.; Athey, John C.; Hamasaki-Katagiri, Nobuko; Katneni, Upendra; Golikov, Anton; Ibla, Juan C.; Bar, Haim; Kimchi-Sarfaty, Chava (January 2020). “TissueCoCoPUTs: Novel Human Tissue-Specific Codon and Codon-Pair Usage Tables Based on Differential Tissue Gene Expression”. 《Journal of Molecular Biology》 432 (11): 3369–3378. doi:10.1016/j.jmb.2020.01.011. PMID 31982380.
Dong, Hengjiang; Nilsson, Lars; Kurland, Charles G. (1996). “Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates”. 《Journal of Molecular Biology》 260 (5): 649–663. doi:10.1006/jmbi.1996.0428. ISSN 0022-2836. PMID 8709146.
Sharp, Paul M.; Stenico, Michele; Peden, John F.; Lloyd, Andrew T. (1993). “Codon usage: mutational bias, translational selection, or both?”. 《Biochem. Soc. Trans.》 21 (4): 835–841. doi:10.1042/bst0210835. PMID 8132077. S2CID 8582630.
Kanaya, Shigehiko; Yamada, Yuko; Kudo, Yoshihiro; Ikemura, Toshimichi (1999). “Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: gene expression level and species-specific diversity of codon usage based on multivariate analysis”. 《Gene》 238 (1): 143–155. doi:10.1016/s0378-1119(99)00225-5. ISSN 0378-1119. PMID 10570992.
Atherton, John C.; Sharp, Paul M.; Lafay, Bénédicte (2000년 4월 1일). “Absence of translationally selected synonymous codon usage bias in Helicobacter pylori”. 《Microbiology》 (영어) 146 (4): 851–860. doi:10.1099/00221287-146-4-851. ISSN 1350-0872. PMID 10784043.
Bornelöv, Susanne; Selmi, Tommaso; Flad, Sophia; Dietmann, Sabine; Frye, Michaela (2019년 6월 7일). “Codon usage optimization in pluripotent embryonic stem cells”. 《Genome Biology》 (영어) 20 (1): 119. doi:10.1186/s13059-019-1726-z. ISSN 1474-760X. PMC 6555954. PMID 31174582.
Lynn DJ, Singer GA, Hickey DA (October 2002). “Synonymous codon usage is subject to selection in thermophilic bacteria”. 《Nucleic Acids Res.》 30 (19): 4272–7. doi:10.1093/nar/gkf546. PMC 140546. PMID 12364606.
Paul S, Bag SK, Das S, Harvill ET, Dutta C (2008). “Molecular signature of hypersaline adaptation: insights from genome and proteome composition of halophilic prokaryotes”. 《Genome Biol.》 9 (4): R70. doi:10.1186/gb-2008-9-4-r70. PMC 2643941. PMID 18397532.
Kober, K. M.; Pogson, G. H. (2013). “Genome-Wide Patterns of Codon Bias Are Shaped by Natural Selection in the Purple Sea Urchin, Strongylocentrotus purpuratus”. 《G3》 3 (7): 1069–1083. doi:10.1534/g3.113.005769. PMC 3704236. PMID 23637123.
McInerney, James O. (1998년 9월 1일). “Replicational and transcriptional selection on codon usage in Borrelia burgdorferi”. 《Proceedings of the National Academy of Sciences》 95 (18): 10698–10703. Bibcode:1998PNAS...9510698M. doi:10.1073/pnas.95.18.10698. ISSN 0027-8424. PMC 27958. PMID 9724767.
Seward, Emily; Kelly, Steve (2016). “Dietary nitrogen alters codon bias and genome composition in parasitic microorganisms”. 《Genome Biology》 17 (226): 3–15. doi:10.1186/s13059-016-1087-9. PMC 5109750. PMID 27842572.
Hershberg, R; Petrov, D. A. (2008). “Selection on codon bias”. 《Annual Review of Genetics》 42: 287–99. doi:10.1146/annurev.genet.42.110807.091442. PMID 18983258. S2CID 7085012.
Ikemura T (September 1981). “Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: a proposal for a synonymous codon choice that is optimal for the E. coli translational system.”. 《J. Mol. Biol.》 151 (3): 389–409. doi:10.1016/0022-2836(81)90003-6. PMID 6175758.
Fox JM, Erill I (June 2010). “Relative codon adaptation: a generic codon bias index for prediction of gene expression”. 《DNA Res.》 17 (3): 185–96. doi:10.1093/dnares/dsq012. PMC 2885275. PMID 20453079.
Sharp, Paul M.; Li, Wen-Hsiung (1987). “The codon adaptation index-a measure of directional synonymous codon usage bias, and its potential applications”. 《Nucleic Acids Research》 15 (3): 1281–1295. doi:10.1093/nar/15.3.1281. PMC 340524. PMID 3547335.

harvard.edu

adsabs.harvard.edu

McInerney, James O. (1998년 9월 1일). “Replicational and transcriptional selection on codon usage in Borrelia burgdorferi”. 《Proceedings of the National Academy of Sciences》 95 (18): 10698–10703. Bibcode:1998PNAS...9510698M. doi:10.1073/pnas.95.18.10698. ISSN 0027-8424. PMC 27958. PMID 9724767.

nih.gov

ncbi.nlm.nih.gov

Athey, John; Alexaki, Aikaterini; Osipova, Ekaterina; Rostovtsev, Alexandre; Santana-Quintero, Luis V.; Katneni, Upendra; Simonyan, Vahan; Kimchi-Sarfaty, Chava (2017년 9월 2일). “A new and updated resource for codon usage tables”. 《BMC Bioinformatics》 18 (391): 391. doi:10.1186/s12859-017-1793-7. PMC 5581930. PMID 28865429.
Alexaki, Aikaterini; Kames, Jacob; Holcomb, David D.; Athey, John; Santana-Quintero, Luis V.; Lam, Phuc Vihn Nguyen; Hamasaki-Katagiri, Nobuko; Osipova, Ekaterina; Simonyan, Vahan; Bar, Haim; Komar, Anton A.; Kimchi-Sarfaty, Chava (June 2019). “Codon and Codon-Pair Usage Tables (CoCoPUTs): Facilitating Genetic Variation Analyses and Recombinant Gene Design”. 《Journal of Molecular Biology》 431 (13): 2434–2441. doi:10.1016/j.jmb.2019.04.021. PMID 31029701.
Kames, Jacob; Alexaki, Aikaterini; Holcomb, David D.; Santana-Quintero, Luis V.; Athey, John C.; Hamasaki-Katagiri, Nobuko; Katneni, Upendra; Golikov, Anton; Ibla, Juan C.; Bar, Haim; Kimchi-Sarfaty, Chava (January 2020). “TissueCoCoPUTs: Novel Human Tissue-Specific Codon and Codon-Pair Usage Tables Based on Differential Tissue Gene Expression”. 《Journal of Molecular Biology》 432 (11): 3369–3378. doi:10.1016/j.jmb.2020.01.011. PMID 31982380.
Dong, Hengjiang; Nilsson, Lars; Kurland, Charles G. (1996). “Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates”. 《Journal of Molecular Biology》 260 (5): 649–663. doi:10.1006/jmbi.1996.0428. ISSN 0022-2836. PMID 8709146.
Sharp, Paul M.; Stenico, Michele; Peden, John F.; Lloyd, Andrew T. (1993). “Codon usage: mutational bias, translational selection, or both?”. 《Biochem. Soc. Trans.》 21 (4): 835–841. doi:10.1042/bst0210835. PMID 8132077. S2CID 8582630.
Kanaya, Shigehiko; Yamada, Yuko; Kudo, Yoshihiro; Ikemura, Toshimichi (1999). “Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: gene expression level and species-specific diversity of codon usage based on multivariate analysis”. 《Gene》 238 (1): 143–155. doi:10.1016/s0378-1119(99)00225-5. ISSN 0378-1119. PMID 10570992.
Atherton, John C.; Sharp, Paul M.; Lafay, Bénédicte (2000년 4월 1일). “Absence of translationally selected synonymous codon usage bias in Helicobacter pylori”. 《Microbiology》 (영어) 146 (4): 851–860. doi:10.1099/00221287-146-4-851. ISSN 1350-0872. PMID 10784043.
Bornelöv, Susanne; Selmi, Tommaso; Flad, Sophia; Dietmann, Sabine; Frye, Michaela (2019년 6월 7일). “Codon usage optimization in pluripotent embryonic stem cells”. 《Genome Biology》 (영어) 20 (1): 119. doi:10.1186/s13059-019-1726-z. ISSN 1474-760X. PMC 6555954. PMID 31174582.
Ermolaeva MD (October 2001). “Synonymous codon usage in bacteria”. 《Curr Issues Mol Biol》 3 (4): 91–7. PMID 11719972.
Lynn DJ, Singer GA, Hickey DA (October 2002). “Synonymous codon usage is subject to selection in thermophilic bacteria”. 《Nucleic Acids Res.》 30 (19): 4272–7. doi:10.1093/nar/gkf546. PMC 140546. PMID 12364606.
Paul S, Bag SK, Das S, Harvill ET, Dutta C (2008). “Molecular signature of hypersaline adaptation: insights from genome and proteome composition of halophilic prokaryotes”. 《Genome Biol.》 9 (4): R70. doi:10.1186/gb-2008-9-4-r70. PMC 2643941. PMID 18397532.
Kober, K. M.; Pogson, G. H. (2013). “Genome-Wide Patterns of Codon Bias Are Shaped by Natural Selection in the Purple Sea Urchin, Strongylocentrotus purpuratus”. 《G3》 3 (7): 1069–1083. doi:10.1534/g3.113.005769. PMC 3704236. PMID 23637123.
McInerney, James O. (1998년 9월 1일). “Replicational and transcriptional selection on codon usage in Borrelia burgdorferi”. 《Proceedings of the National Academy of Sciences》 95 (18): 10698–10703. Bibcode:1998PNAS...9510698M. doi:10.1073/pnas.95.18.10698. ISSN 0027-8424. PMC 27958. PMID 9724767.
Seward, Emily; Kelly, Steve (2016). “Dietary nitrogen alters codon bias and genome composition in parasitic microorganisms”. 《Genome Biology》 17 (226): 3–15. doi:10.1186/s13059-016-1087-9. PMC 5109750. PMID 27842572.
Hershberg, R; Petrov, D. A. (2008). “Selection on codon bias”. 《Annual Review of Genetics》 42: 287–99. doi:10.1146/annurev.genet.42.110807.091442. PMID 18983258. S2CID 7085012.
Ikemura T (September 1981). “Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: a proposal for a synonymous codon choice that is optimal for the E. coli translational system.”. 《J. Mol. Biol.》 151 (3): 389–409. doi:10.1016/0022-2836(81)90003-6. PMID 6175758.
Fox JM, Erill I (June 2010). “Relative codon adaptation: a generic codon bias index for prediction of gene expression”. 《DNA Res.》 17 (3): 185–96. doi:10.1093/dnares/dsq012. PMC 2885275. PMID 20453079.
Sharp, Paul M.; Li, Wen-Hsiung (1987). “The codon adaptation index-a measure of directional synonymous codon usage bias, and its potential applications”. 《Nucleic Acids Research》 15 (3): 1281–1295. doi:10.1093/nar/15.3.1281. PMC 340524. PMID 3547335.

oxfordjournals.org

dnaresearch.oxfordjournals.org

Fox JM, Erill I (June 2010). “Relative codon adaptation: a generic codon bias index for prediction of gene expression”. 《DNA Res.》 17 (3): 185–96. doi:10.1093/dnares/dsq012. PMC 2885275. PMID 20453079.

pnas.org

McInerney, James O. (1998년 9월 1일). “Replicational and transcriptional selection on codon usage in Borrelia burgdorferi”. 《Proceedings of the National Academy of Sciences》 95 (18): 10698–10703. Bibcode:1998PNAS...9510698M. doi:10.1073/pnas.95.18.10698. ISSN 0027-8424. PMC 27958. PMID 9724767.

semanticscholar.org

api.semanticscholar.org

Sharp, Paul M.; Stenico, Michele; Peden, John F.; Lloyd, Andrew T. (1993). “Codon usage: mutational bias, translational selection, or both?”. 《Biochem. Soc. Trans.》 21 (4): 835–841. doi:10.1042/bst0210835. PMID 8132077. S2CID 8582630.
Hershberg, R; Petrov, D. A. (2008). “Selection on codon bias”. 《Annual Review of Genetics》 42: 287–99. doi:10.1146/annurev.genet.42.110807.091442. PMID 18983258. S2CID 7085012.

sourceforge.net

codonw.sourceforge.net

Peden J (2005년 4월 15일). “Codon usage indices”. 《Correspondence Analysis of Codon Usage》. SourceForge. 2010년 10월 20일에 확인함.

worldcat.org

Dong, Hengjiang; Nilsson, Lars; Kurland, Charles G. (1996). “Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates”. 《Journal of Molecular Biology》 260 (5): 649–663. doi:10.1006/jmbi.1996.0428. ISSN 0022-2836. PMID 8709146.
Kanaya, Shigehiko; Yamada, Yuko; Kudo, Yoshihiro; Ikemura, Toshimichi (1999). “Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: gene expression level and species-specific diversity of codon usage based on multivariate analysis”. 《Gene》 238 (1): 143–155. doi:10.1016/s0378-1119(99)00225-5. ISSN 0378-1119. PMID 10570992.
Atherton, John C.; Sharp, Paul M.; Lafay, Bénédicte (2000년 4월 1일). “Absence of translationally selected synonymous codon usage bias in Helicobacter pylori”. 《Microbiology》 (영어) 146 (4): 851–860. doi:10.1099/00221287-146-4-851. ISSN 1350-0872. PMID 10784043.
Bornelöv, Susanne; Selmi, Tommaso; Flad, Sophia; Dietmann, Sabine; Frye, Michaela (2019년 6월 7일). “Codon usage optimization in pluripotent embryonic stem cells”. 《Genome Biology》 (영어) 20 (1): 119. doi:10.1186/s13059-019-1726-z. ISSN 1474-760X. PMC 6555954. PMID 31174582.
McInerney, James O. (1998년 9월 1일). “Replicational and transcriptional selection on codon usage in Borrelia burgdorferi”. 《Proceedings of the National Academy of Sciences》 95 (18): 10698–10703. Bibcode:1998PNAS...9510698M. doi:10.1073/pnas.95.18.10698. ISSN 0027-8424. PMC 27958. PMID 9724767.