Mapa de contato de proteína (Portuguese Wikipedia)
Analysis of information sources in references of the Wikipedia article "Mapa de contato de proteína" in Portuguese language version.
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arxiv.org
- Weigt, M; White, RA; Szurmant, H; Hoch, JA; Hwa, T (2009). «Identification of direct residue contacts in protein–protein interaction by message passing.». Proc Natl Acad Sci USA. 106 (1): 67–72. Bibcode:2009PNAS..106...67W. PMC 2629192
. PMID 19116270. arXiv:0901.1248. doi:10.1073/pnas.0805923106
doi.org
dx.doi.org
- Pietal, MJ.; Bujnicki, JM.; Kozlowski, LP. (Jun 2015). «GDFuzz3D: a method for protein 3D structure reconstruction from contact maps, based on a non-Euclidean distance function.». Bioinformatics. 31 (21): 3499–505. PMID 26130575. doi:10.1093/bioinformatics/btv390
- Vassura M, Margara L, Di Lena P, Medri F, Fariselli P, Casadio R (2008). «Reconstruction of 3D Structures From Protein Contact Maps». IEEE/ACM Transactions on Computational Biology and Bioinformatics. 5 (3): 357–367. PMID 18670040. doi:10.1109/TCBB.2008.27
- Holm L, Sander C (Agosto de 1996). «Mapping the protein universe». Science. 273 (5275): 595–603. Bibcode:1996Sci...273..595H. PMID 8662544. doi:10.1126/science.273.5275.595
- Fitch, W. M.; Markowitz, E. (1970). «An improved method for determining codon variability in a gene and its application to the rate of fixation of mutations in evolution.». Biochem. Genet. 4 (5): 579–593. PMID 5489762. doi:10.1007/bf00486096
- Kass, I.; Horovitz, A. (2002). «Mapping pathways of allosteric communication in GroEL by analysis of correlated mutations.». Proteins. 48 (4): 611–617. PMID 12211028. doi:10.1002/prot.10180
- Gobel, U.; et al. (1994). «Correlated mutations and residue contacts in proteins.». Proteins. 18 (4): 309–317. PMID 8208723. doi:10.1002/prot.340180402
- Wollenberg, K. R.; Atchley, W. R. (2000). «Separation of phylogenetic and functional associations in biological sequences by using the parametric bootstrap.». Proc. Natl. Acad. Sci. USA. 97 (7): 3288–3291. Bibcode:2000PNAS...97.3288W. PMC 16231. PMID 10725404. doi:10.1073/pnas.97.7.3288
- Weigt, M; White, RA; Szurmant, H; Hoch, JA; Hwa, T (2009). «Identification of direct residue contacts in protein–protein interaction by message passing.». Proc Natl Acad Sci USA. 106 (1): 67–72. Bibcode:2009PNAS..106...67W. PMC 2629192. PMID 19116270. arXiv:0901.1248. doi:10.1073/pnas.0805923106
- Morcos, F; et al. (2011). «Direct-coupling analysis of residue coevolution captures native contacts across many protein families.». Proc Natl Acad Sci USA. 108 (49): E1293–E1301. PMC 3241805. PMID 22106262. doi:10.1073/pnas.1111471108
- Hanson, Jack; Paliwal, Kuldip K; Litfin, Thomas; Yang, Yuedong; Zhou, Yaoqi (2018). «Accurate Prediction of Protein Contact Maps by Coupling Residual Two-Dimensional Bidirectional Long Short-Term Memory with Convolutional Neural Networks». Bioinformatics. 34 (23): 4039–4045. PMID 29931279. doi:10.1093/bioinformatics/bty481
- Bikadi Z, Demko L, Hazai E (2007). «Functional and structural characterization of a protein based on analysis of its hydrogen bonding network by hydrogen bonding plot». Arch Biochem Biophys. 461 (2): 225–234. PMID 17391641. doi:10.1016/j.abb.2007.02.020
harvard.edu
ui.adsabs.harvard.edu
- Holm L, Sander C (Agosto de 1996). «Mapping the protein universe». Science. 273 (5275): 595–603. Bibcode:1996Sci...273..595H. PMID 8662544. doi:10.1126/science.273.5275.595
- Wollenberg, K. R.; Atchley, W. R. (2000). «Separation of phylogenetic and functional associations in biological sequences by using the parametric bootstrap.». Proc. Natl. Acad. Sci. USA. 97 (7): 3288–3291. Bibcode:2000PNAS...97.3288W. PMC 16231. PMID 10725404. doi:10.1073/pnas.97.7.3288
- Weigt, M; White, RA; Szurmant, H; Hoch, JA; Hwa, T (2009). «Identification of direct residue contacts in protein–protein interaction by message passing.». Proc Natl Acad Sci USA. 106 (1): 67–72. Bibcode:2009PNAS..106...67W. PMC 2629192. PMID 19116270. arXiv:0901.1248. doi:10.1073/pnas.0805923106
nih.gov
ncbi.nlm.nih.gov
- Pietal, MJ.; Bujnicki, JM.; Kozlowski, LP. (Jun 2015). «GDFuzz3D: a method for protein 3D structure reconstruction from contact maps, based on a non-Euclidean distance function.». Bioinformatics. 31 (21): 3499–505. PMID 26130575. doi:10.1093/bioinformatics/btv390
- Vassura M, Margara L, Di Lena P, Medri F, Fariselli P, Casadio R (2008). «Reconstruction of 3D Structures From Protein Contact Maps». IEEE/ACM Transactions on Computational Biology and Bioinformatics. 5 (3): 357–367. PMID 18670040. doi:10.1109/TCBB.2008.27
- Holm L, Sander C (Agosto de 1996). «Mapping the protein universe». Science. 273 (5275): 595–603. Bibcode:1996Sci...273..595H. PMID 8662544. doi:10.1126/science.273.5275.595
- Fitch, W. M.; Markowitz, E. (1970). «An improved method for determining codon variability in a gene and its application to the rate of fixation of mutations in evolution.». Biochem. Genet. 4 (5): 579–593. PMID 5489762. doi:10.1007/bf00486096
- Kass, I.; Horovitz, A. (2002). «Mapping pathways of allosteric communication in GroEL by analysis of correlated mutations.». Proteins. 48 (4): 611–617. PMID 12211028. doi:10.1002/prot.10180
- Gobel, U.; et al. (1994). «Correlated mutations and residue contacts in proteins.». Proteins. 18 (4): 309–317. PMID 8208723. doi:10.1002/prot.340180402
- Wollenberg, K. R.; Atchley, W. R. (2000). «Separation of phylogenetic and functional associations in biological sequences by using the parametric bootstrap.». Proc. Natl. Acad. Sci. USA. 97 (7): 3288–3291. Bibcode:2000PNAS...97.3288W. PMC 16231. PMID 10725404. doi:10.1073/pnas.97.7.3288
- Weigt, M; White, RA; Szurmant, H; Hoch, JA; Hwa, T (2009). «Identification of direct residue contacts in protein–protein interaction by message passing.». Proc Natl Acad Sci USA. 106 (1): 67–72. Bibcode:2009PNAS..106...67W. PMC 2629192. PMID 19116270. arXiv:0901.1248. doi:10.1073/pnas.0805923106
- Morcos, F; et al. (2011). «Direct-coupling analysis of residue coevolution captures native contacts across many protein families.». Proc Natl Acad Sci USA. 108 (49): E1293–E1301. PMC 3241805. PMID 22106262. doi:10.1073/pnas.1111471108
- Hanson, Jack; Paliwal, Kuldip K; Litfin, Thomas; Yang, Yuedong; Zhou, Yaoqi (2018). «Accurate Prediction of Protein Contact Maps by Coupling Residual Two-Dimensional Bidirectional Long Short-Term Memory with Convolutional Neural Networks». Bioinformatics. 34 (23): 4039–4045. PMID 29931279. doi:10.1093/bioinformatics/bty481
- Bikadi Z, Demko L, Hazai E (2007). «Functional and structural characterization of a protein based on analysis of its hydrogen bonding network by hydrogen bonding plot». Arch Biochem Biophys. 461 (2): 225–234. PMID 17391641. doi:10.1016/j.abb.2007.02.020