Сайт связывания (Russian Wikipedia)

Analysis of information sources in references of the Wikipedia article "Сайт связывания" in Russian language version.

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archive.org

doi.org

doi.org

  • "Binding site prediction for protein-protein interactions and novel motif discovery using re-occurring polypeptide sequences". BMC Bioinformatics. 12: 225. June 2011. doi:10.1186/1471-2105-12-225. PMID 21635751.{{cite journal}}: Википедия:Обслуживание CS1 (не помеченный открытым DOI) (ссылка)
  • "3D U-Net: A Voxel-based method in binding site prediction of protein structure". Journal of Bioinformatics and Computational Biology. 19 (1): 1—10. April 2021. doi:10.1142/S0219720021500062. ISSN 1757-6334.
  • "Protein function annotation by local binding site surface similarity". Proteins. 82 (4): 679—94. April 2014. doi:10.1002/prot.24450. PMID 24166661.
  • "Targeting biomolecules with reversible covalent chemistry". Current Opinion in Chemical Biology. 34: 110—116. October 2016. doi:10.1016/j.cbpa.2016.08.011. PMID 27599186.
  • "Small-molecule binding sites to explore protein-protein interactions in the cancer proteome". Molecular BioSystems. 12 (10): 3067—87. October 2016. doi:10.1039/c6mb00231e. PMID 27452673.
  • "Allosteric binding sites in Rab11 for potential drug candidates". PLOS One. 13 (6): e0198632. 2018-06-06. doi:10.1371/journal.pone.0198632. PMID 29874286.{{cite journal}}: Википедия:Обслуживание CS1 (не помеченный открытым DOI) (ссылка)
  • "Binding site comparison for function prediction and pharmaceutical discovery". Current Opinion in Structural Biology. 25: 34—9. April 2014. doi:10.1016/j.sbi.2013.11.012. PMID 24878342.
  • "Ligand Binding Site Structure Shapes Folding, Assembly and Degradation of Homomeric Protein Complexes". Journal of Molecular Biology. 431 (19): 3871—3888. 2019. doi:10.1016/j.jmb.2019.07.014. PMID 31306664.
  • "Ligand Binding Site Structure Influences the Evolution of Protein Complex Function and Topology". Cell Reports. 22 (12): 3265—3276. 2018. doi:10.1016/j.celrep.2018.02.085. PMID 29562182.
  • "Ligand-Binding-Site Structure Shapes Allosteric Signal Transduction and the Evolution of Allostery in Protein Complexes". Molecular Biology and Evolution. 36 (8): 1711—1727. 2019. doi:10.1093/molbev/msz093. PMID 31004156.
  • "CryptoSite: Expanding the Druggable Proteome by Characterization and Prediction of Cryptic Binding Sites". Journal of Molecular Biology. 428 (4): 709—719. February 2016. doi:10.1016/j.jmb.2016.01.029. PMID 26854760.
  • "Exploring the structural origins of cryptic sites on proteins". Proceedings of the National Academy of Sciences of the United States of America. 115 (15): E3416–E3425. April 2018. doi:10.1073/pnas.1711490115. PMID 29581267.
  • "Discovery of multiple hidden allosteric sites by combining Markov state models and experiments". Proceedings of the National Academy of Sciences of the United States of America. 112 (9): 2734—9. March 2015. doi:10.1073/pnas.1417811112. PMID 25730859.
  • "Structural Fluctuations of Aromatic Residues in an Apo-Form Reveal Cryptic Binding Sites: Implications for Fragment-Based Drug Design". The Journal of Physical Chemistry B. 124 (45): 9977—9986. November 2020. doi:10.1021/acs.jpcb.0c04963.
  • "Teaching biochemistry online at Oregon State University". Biochemistry and Molecular Biology Education. 45 (1): 25—30. January 2017. doi:10.1002/bmb.20979. PMID 27228905.
  • "Kinetics of enzyme action on surface-attached substrates: a practical guide to progress curve analysis in any kinetic situation". Langmuir. 28 (41): 14665—71. October 2012. doi:10.1021/la3030827. PMID 22978617.
  • "Apolipoprotein A-IV: A potential therapeutic target for atherosclerosis". Prostaglandins & Other Lipid Mediators. 139: 87—92. November 2018. doi:10.1016/j.prostaglandins.2018.10.004. PMID 30352313.
  • "Skeletal myosin binding protein-C: An increasingly important regulator of striated muscle physiology". Archives of Biochemistry and Biophysics. 660: 121—128. December 2018. doi:10.1016/j.abb.2018.10.007. PMID 30339776.
  • "Understanding and managing methotrexate nephrotoxicity". The Oncologist. 11 (6): 694—703. June 2006. doi:10.1634/theoncologist.11-6-694. PMID 16794248.
  • "Interaction of dihydrofolate reductase with methotrexate: ensemble and single-molecule kinetics". Proceedings of the National Academy of Sciences of the United States of America. 99 (21): 13481—6. October 2002. doi:10.1073/pnas.172501499. PMID 12359872.
  • "Botulinal neurotoxins: revival of an old killer". Current Opinion in Pharmacology. 5 (3): 274—9. June 2005. doi:10.1016/j.coph.2004.12.006. PMID 15907915.
  • "Proteins and Their Interacting Partners: An Introduction to Protein-Ligand Binding Site Prediction Methods". International Journal of Molecular Sciences. 16 (12): 29829—42. December 2015. doi:10.3390/ijms161226202. PMID 26694353.{{cite journal}}: Википедия:Обслуживание CS1 (не помеченный открытым DOI) (ссылка)
  • "Can We Rely on Computational Predictions To Correctly Identify Ligand Binding Sites on Novel Protein Drug Targets? Assessment of Binding Site Prediction Methods and a Protocol for Validation of Predicted Binding Sites". Cell Biochemistry and Biophysics. 75 (1): 15—23. March 2017. doi:10.1007/s12013-016-0769-y. PMID 27796788.
  • "Analysis of protein-protein interaction sites using surface patches". Journal of Molecular Biology. 272 (1): 121—32. September 1997. doi:10.1006/jmbi.1997.1234. PMID 9299342.

dx.doi.org

nih.gov

pubmed.ncbi.nlm.nih.gov

  • "Binding site prediction for protein-protein interactions and novel motif discovery using re-occurring polypeptide sequences". BMC Bioinformatics. 12: 225. June 2011. doi:10.1186/1471-2105-12-225. PMID 21635751.{{cite journal}}: Википедия:Обслуживание CS1 (не помеченный открытым DOI) (ссылка)
  • "Protein function annotation by local binding site surface similarity". Proteins. 82 (4): 679—94. April 2014. doi:10.1002/prot.24450. PMID 24166661.
  • "Targeting biomolecules with reversible covalent chemistry". Current Opinion in Chemical Biology. 34: 110—116. October 2016. doi:10.1016/j.cbpa.2016.08.011. PMID 27599186.
  • "Small-molecule binding sites to explore protein-protein interactions in the cancer proteome". Molecular BioSystems. 12 (10): 3067—87. October 2016. doi:10.1039/c6mb00231e. PMID 27452673.
  • "Allosteric binding sites in Rab11 for potential drug candidates". PLOS One. 13 (6): e0198632. 2018-06-06. doi:10.1371/journal.pone.0198632. PMID 29874286.{{cite journal}}: Википедия:Обслуживание CS1 (не помеченный открытым DOI) (ссылка)
  • "Binding site comparison for function prediction and pharmaceutical discovery". Current Opinion in Structural Biology. 25: 34—9. April 2014. doi:10.1016/j.sbi.2013.11.012. PMID 24878342.
  • "Ligand Binding Site Structure Shapes Folding, Assembly and Degradation of Homomeric Protein Complexes". Journal of Molecular Biology. 431 (19): 3871—3888. 2019. doi:10.1016/j.jmb.2019.07.014. PMID 31306664.
  • "Ligand Binding Site Structure Influences the Evolution of Protein Complex Function and Topology". Cell Reports. 22 (12): 3265—3276. 2018. doi:10.1016/j.celrep.2018.02.085. PMID 29562182.
  • "Ligand-Binding-Site Structure Shapes Allosteric Signal Transduction and the Evolution of Allostery in Protein Complexes". Molecular Biology and Evolution. 36 (8): 1711—1727. 2019. doi:10.1093/molbev/msz093. PMID 31004156.
  • "CryptoSite: Expanding the Druggable Proteome by Characterization and Prediction of Cryptic Binding Sites". Journal of Molecular Biology. 428 (4): 709—719. February 2016. doi:10.1016/j.jmb.2016.01.029. PMID 26854760.
  • "Exploring the structural origins of cryptic sites on proteins". Proceedings of the National Academy of Sciences of the United States of America. 115 (15): E3416–E3425. April 2018. doi:10.1073/pnas.1711490115. PMID 29581267.
  • "Discovery of multiple hidden allosteric sites by combining Markov state models and experiments". Proceedings of the National Academy of Sciences of the United States of America. 112 (9): 2734—9. March 2015. doi:10.1073/pnas.1417811112. PMID 25730859.
  • "Teaching biochemistry online at Oregon State University". Biochemistry and Molecular Biology Education. 45 (1): 25—30. January 2017. doi:10.1002/bmb.20979. PMID 27228905.
  • "Kinetics of enzyme action on surface-attached substrates: a practical guide to progress curve analysis in any kinetic situation". Langmuir. 28 (41): 14665—71. October 2012. doi:10.1021/la3030827. PMID 22978617.
  • "Apolipoprotein A-IV: A potential therapeutic target for atherosclerosis". Prostaglandins & Other Lipid Mediators. 139: 87—92. November 2018. doi:10.1016/j.prostaglandins.2018.10.004. PMID 30352313.
  • "Skeletal myosin binding protein-C: An increasingly important regulator of striated muscle physiology". Archives of Biochemistry and Biophysics. 660: 121—128. December 2018. doi:10.1016/j.abb.2018.10.007. PMID 30339776.
  • "Understanding and managing methotrexate nephrotoxicity". The Oncologist. 11 (6): 694—703. June 2006. doi:10.1634/theoncologist.11-6-694. PMID 16794248.
  • "Interaction of dihydrofolate reductase with methotrexate: ensemble and single-molecule kinetics". Proceedings of the National Academy of Sciences of the United States of America. 99 (21): 13481—6. October 2002. doi:10.1073/pnas.172501499. PMID 12359872.
  • "Botulinal neurotoxins: revival of an old killer". Current Opinion in Pharmacology. 5 (3): 274—9. June 2005. doi:10.1016/j.coph.2004.12.006. PMID 15907915.
  • "Proteins and Their Interacting Partners: An Introduction to Protein-Ligand Binding Site Prediction Methods". International Journal of Molecular Sciences. 16 (12): 29829—42. December 2015. doi:10.3390/ijms161226202. PMID 26694353.{{cite journal}}: Википедия:Обслуживание CS1 (не помеченный открытым DOI) (ссылка)
  • "Can We Rely on Computational Predictions To Correctly Identify Ligand Binding Sites on Novel Protein Drug Targets? Assessment of Binding Site Prediction Methods and a Protocol for Validation of Predicted Binding Sites". Cell Biochemistry and Biophysics. 75 (1): 15—23. March 2017. doi:10.1007/s12013-016-0769-y. PMID 27796788.
  • "Analysis of protein-protein interaction sites using surface patches". Journal of Molecular Biology. 272 (1): 121—32. September 1997. doi:10.1006/jmbi.1997.1234. PMID 9299342.

meshb.nlm.nih.gov

  • Binding site. Medical Subject Headings (MeSH). U.S. National Library of Medicine. — «The parts of a macromolecule that directly participate in its specific combination with another molecule.» Дата обращения: 14 августа 2021. Архивировано 17 июня 2020 года.
  • Ligands. Medical Subject Headings (MeSH). U.S. National Library of Medicine. — «A molecule that binds to another molecule, used especially to refer to a small molecule that binds specifically to a larger molecule.» Дата обращения: 14 августа 2021. Архивировано 17 июня 2020 года.

web.archive.org

  • Binding site. Medical Subject Headings (MeSH). U.S. National Library of Medicine. — «The parts of a macromolecule that directly participate in its specific combination with another molecule.» Дата обращения: 14 августа 2021. Архивировано 17 июня 2020 года.
  • Ligands. Medical Subject Headings (MeSH). U.S. National Library of Medicine. — «A molecule that binds to another molecule, used especially to refer to a small molecule that binds specifically to a larger molecule.» Дата обращения: 14 августа 2021. Архивировано 17 июня 2020 года.

worldcat.org

worldcat.org

search.worldcat.org

  • "3D U-Net: A Voxel-based method in binding site prediction of protein structure". Journal of Bioinformatics and Computational Biology. 19 (1): 1—10. April 2021. doi:10.1142/S0219720021500062. ISSN 1757-6334.