References analysis of the Wikipedia article "Ферментный промискуитет" in the Russian version

doi.org

Srinivasan, Bharath (2016-07-12). "Catalytic and substrate promiscuity: distinct multiple chemistries catalysed by the phosphatase domain of receptor protein tyrosine phosphatase". Biochemical Journal. 473 (14): 2165—2177. doi:10.1042/bcj20160289. ISSN 0264-6021. PMID 27208174.

"Enzyme promiscuity: a mechanistic and evolutionary perspective". Annual Review of Biochemistry. 79: 471—505. 2010. doi:10.1146/annurev-biochem-030409-143718. PMID 20235827.

"Catalytic improvement and evolution of atrazine chlorohydrolase". Applied and Environmental Microbiology. 75 (7): 2184—91. April 2009. doi:10.1128/AEM.02634-08. PMID 19201959.

"Reconstruction of ancestral metabolic enzymes reveals molecular mechanisms underlying evolutionary innovation through gene duplication". PLOS Biology. 10 (12): e1001446. 2012. doi:10.1371/journal.pbio.1001446. PMID 23239941.{{cite journal}}: Википедия:Обслуживание CS1 (не помеченный открытым DOI) (ссылка)

"Multicopy suppression underpins metabolic evolvability". Molecular Biology and Evolution. 24 (12): 2716—22. December 2007. doi:10.1093/molbev/msm204. PMID 17884825.

"The 'evolvability' of promiscuous protein functions". Nature Genetics. 37 (1): 73—6. January 2005. doi:10.1038/ng1482. PMID 15568024.

"Diminishing returns and tradeoffs constrain the laboratory optimization of an enzyme". Nature Communications. 3: 1257. 2012. Bibcode:2012NatCo...3.1257T. doi:10.1038/ncomms2246. PMID 23212386.

"Assessing the accuracy of ancestral protein reconstruction methods". PLOS Computational Biology. 2 (6): e69. June 2006. Bibcode:2006PLSCB...2...69W. doi:10.1371/journal.pcbi.0020069. PMID 16789817.{{cite journal}}: Википедия:Обслуживание CS1 (не помеченный открытым DOI) (ссылка)

"Single-step assembly of a gene and entire plasmid from large numbers of oligodeoxyribonucleotides". Gene. 164 (1): 49—53. October 1995. doi:10.1016/0378-1119(95)00511-4. PMID 7590320.

"A despecialization step underlying evolution of a family of serine proteases". Molecular Cell. 12 (2): 343—54. August 2003. doi:10.1016/s1097-2765(03)00308-3. PMID 14536074.

"Resurrecting ancient genes: experimental analysis of extinct molecules" (PDF). Nature Reviews Genetics. 5 (5): 366—75. May 2004. doi:10.1038/nrg1324. PMID 15143319. Архивировано (PDF) 27 марта 2012. Дата обращения: 25 июля 2021.

"Resurrecting the ancestral steroid receptor: ancient origin of estrogen signaling". Science. 301 (5640): 1714—7. September 2003. Bibcode:2003Sci...301.1714T. doi:10.1126/science.1086185. PMID 14500980.

"Enzyme recruitment in evolution of new function". Annual Review of Microbiology. 30: 409—25. 1976. doi:10.1146/annurev.mi.30.100176.002205. PMID 791073.

"The primordial metabolism: an ancestral interconnection between leucine, arginine, and lysine biosynthesis". BMC Evolutionary Biology. 7 Suppl 2: S3. 2007. doi:10.1186/1471-2148-7-S2-S3. PMID 17767731.{{cite journal}}: Википедия:Обслуживание CS1 (не помеченный открытым DOI) (ссылка)

"Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection". Molecular Systems Biology. 2: 2006.0008. 2006. doi:10.1038/msb4100050. PMID 16738554.

"Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research". DNA Research. 12 (5): 291—9. 2006. doi:10.1093/dnares/dsi012. PMID 16769691.

"Artificial gene amplification reveals an abundance of promiscuous resistance determinants in Escherichia coli". Proceedings of the National Academy of Sciences of the United States of America. 108 (4): 1484—9. January 2011. Bibcode:2011PNAS..108.1484S. doi:10.1073/pnas.1012108108. PMID 21173244.

"Functional interrelationships in the alkaline phosphatase superfamily: phosphodiesterase activity of Escherichia coli alkaline phosphatase". Biochemistry. 40 (19): 5691—9. May 2001. doi:10.1021/bi0028892. PMID 11341834.

"Cloning, overexpression, purification, and characterization of O-acetylserine sulfhydrylase-B from Escherichia coli". Protein Expression and Purification. 47 (2): 607—13. June 2006. doi:10.1016/j.pep.2006.01.002. PMID 16546401.

"Stability effects of mutations and protein evolvability". Current Opinion in Structural Biology. 19 (5): 596—604. October 2009. doi:10.1016/j.sbi.2009.08.003. PMID 19765975.

"Promiscuity comes at a price: catalytic versatility vs efficiency in different metal ion derivatives of the potential bioremediator GpdQ". Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics. 1834 (1): 425—32. January 2013. doi:10.1016/j.bbapap.2012.02.004. PMID 22366468.

"Evolutionary potential of (beta/alpha)8-barrels: functional promiscuity produced by single substitutions in the enolase superfamily". Biochemistry. 42 (28): 8387—93. July 2003. doi:10.1021/bi034769a. PMID 12859183.

"Designed divergent evolution of enzyme function". Nature. 440 (7087): 1078—82. April 2006. Bibcode:2006Natur.440.1078Y. doi:10.1038/nature04607. PMID 16495946.

"Specificity of trypsin and chymotrypsin: loop-motion-controlled dynamic correlation as a determinant". Biophysical Journal. 89 (2): 1183—93. August 2005. arXiv:q-bio/0505037. Bibcode:2005BpJ....89.1183M. doi:10.1529/biophysj.104.057158. PMID 15923233.

"Crystal structure of the Pyrococcus horikoshii isopropylmalate isomerase small subunit provides insight into the dual substrate specificity of the enzyme". Journal of Molecular Biology. 344 (2): 325—33. November 2004. doi:10.1016/j.jmb.2004.09.035. PMID 15522288.

"Structural diversity and protein engineering of the aminoacyl-tRNA synthetases". Biochemistry. 51 (44): 8705—29. November 2012. doi:10.1021/bi301180x. PMID 23075299.

"Mapping the limits of substrate specificity of the adenylation domain of TycA". ChemBioChem. 10 (4): 671—82. March 2009. doi:10.1002/cbic.200800553. PMID 19189362.

"Promiscuous restriction is a cellular defense strategy that confers fitness advantage to bacteria". Proceedings of the National Academy of Sciences of the United States of America. 109 (20): E1287—93. May 2012. Bibcode:2012PNAS..109E1287V. doi:10.1073/pnas.1119226109. PMID 22509013.

"The rise of chemodiversity in plants". Science. 336 (6089): 1667—70. June 2012. Bibcode:2012Sci...336.1667W. doi:10.1126/science.1217411. PMID 22745420.

"Engineering the third wave of biocatalysis". Nature. 485 (7397): 185—94. May 2012. Bibcode:2012Natur.485..185B. doi:10.1038/nature11117. PMID 22575958.

"Comparison of the omega-transaminases from different microorganisms and application to production of chiral amines". Bioscience, Biotechnology, and Biochemistry. 65 (8): 1782—8. August 2001. doi:10.1271/bbb.65.1782. PMID 11577718.

"Semisynthetic production of unnatural L-alpha-amino acids by metabolic engineering of the cysteine-biosynthetic pathway". Nature Biotechnology. 21 (4): 422—7. April 2003. doi:10.1038/nbt807. PMID 12640465.

"EC-BLAST: a tool to automatically search and compare enzyme reactions". Nature Methods. 11 (2): 171—4. February 2014. doi:10.1038/nmeth.2803. PMID 24412978.

"The enzymes of detoxication". The Journal of Biological Chemistry. 265 (34): 20715—8. December 1990. doi:10.1016/S0021-9258(17)45272-0. PMID 2249981.

harvard.edu

ui.adsabs.harvard.edu

"Diminishing returns and tradeoffs constrain the laboratory optimization of an enzyme". Nature Communications. 3: 1257. 2012. Bibcode:2012NatCo...3.1257T. doi:10.1038/ncomms2246. PMID 23212386.

"Designed divergent evolution of enzyme function". Nature. 440 (7087): 1078—82. April 2006. Bibcode:2006Natur.440.1078Y. doi:10.1038/nature04607. PMID 16495946.

"The rise of chemodiversity in plants". Science. 336 (6089): 1667—70. June 2012. Bibcode:2012Sci...336.1667W. doi:10.1126/science.1217411. PMID 22745420.

"Engineering the third wave of biocatalysis". Nature. 485 (7397): 185—94. May 2012. Bibcode:2012Natur.485..185B. doi:10.1038/nature11117. PMID 22575958.

nih.gov

pubmed.ncbi.nlm.nih.gov

"Enzyme promiscuity: a mechanistic and evolutionary perspective". Annual Review of Biochemistry. 79: 471—505. 2010. doi:10.1146/annurev-biochem-030409-143718. PMID 20235827.

"Catalytic improvement and evolution of atrazine chlorohydrolase". Applied and Environmental Microbiology. 75 (7): 2184—91. April 2009. doi:10.1128/AEM.02634-08. PMID 19201959.

"Multicopy suppression underpins metabolic evolvability". Molecular Biology and Evolution. 24 (12): 2716—22. December 2007. doi:10.1093/molbev/msm204. PMID 17884825.

"The 'evolvability' of promiscuous protein functions". Nature Genetics. 37 (1): 73—6. January 2005. doi:10.1038/ng1482. PMID 15568024.

"Diminishing returns and tradeoffs constrain the laboratory optimization of an enzyme". Nature Communications. 3: 1257. 2012. Bibcode:2012NatCo...3.1257T. doi:10.1038/ncomms2246. PMID 23212386.

"Single-step assembly of a gene and entire plasmid from large numbers of oligodeoxyribonucleotides". Gene. 164 (1): 49—53. October 1995. doi:10.1016/0378-1119(95)00511-4. PMID 7590320.

"A despecialization step underlying evolution of a family of serine proteases". Molecular Cell. 12 (2): 343—54. August 2003. doi:10.1016/s1097-2765(03)00308-3. PMID 14536074.

"Enzyme recruitment in evolution of new function". Annual Review of Microbiology. 30: 409—25. 1976. doi:10.1146/annurev.mi.30.100176.002205. PMID 791073.

"Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection". Molecular Systems Biology. 2: 2006.0008. 2006. doi:10.1038/msb4100050. PMID 16738554.

"Stability effects of mutations and protein evolvability". Current Opinion in Structural Biology. 19 (5): 596—604. October 2009. doi:10.1016/j.sbi.2009.08.003. PMID 19765975.

"Designed divergent evolution of enzyme function". Nature. 440 (7087): 1078—82. April 2006. Bibcode:2006Natur.440.1078Y. doi:10.1038/nature04607. PMID 16495946.

"Structural diversity and protein engineering of the aminoacyl-tRNA synthetases". Biochemistry. 51 (44): 8705—29. November 2012. doi:10.1021/bi301180x. PMID 23075299.

"Mapping the limits of substrate specificity of the adenylation domain of TycA". ChemBioChem. 10 (4): 671—82. March 2009. doi:10.1002/cbic.200800553. PMID 19189362.

"The rise of chemodiversity in plants". Science. 336 (6089): 1667—70. June 2012. Bibcode:2012Sci...336.1667W. doi:10.1126/science.1217411. PMID 22745420.

"Engineering the third wave of biocatalysis". Nature. 485 (7397): 185—94. May 2012. Bibcode:2012Natur.485..185B. doi:10.1038/nature11117. PMID 22575958.

"EC-BLAST: a tool to automatically search and compare enzyme reactions". Nature Methods. 11 (2): 171—4. February 2014. doi:10.1038/nmeth.2803. PMID 24412978.

"The enzymes of detoxication". The Journal of Biological Chemistry. 265 (34): 20715—8. December 1990. doi:10.1016/S0021-9258(17)45272-0. PMID 2249981.

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Ферментный промискуитет (Russian Wikipedia)

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