References analysis of the Wikipedia article "Cas9" in the Russian version

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Heler R., Samai P., Modell J. W., Weiner C., Goldberg G. W., Bikard D., Marraffini L. A. Cas9 specifies functional viral targets during CRISPR-Cas adaptation. (англ.) // Nature. — 2015. — Vol. 519, no. 7542. — P. 199—202. — doi:10.1038/nature14245. — PMID 25707807. [исправить]

Jinek M., Chylinski K., Fonfara I., Hauer M., Doudna J. A., Charpentier E. A Programmable Dual-RNA-Guided DNA Endonuclease in Adaptive Bacterial Immunity // Science. — 2012. — 28 июня (т. 337, № 6096). — С. 816—821. — ISSN 0036-8075. — doi:10.1126/science.1225829. [исправить]

Carlaw, T. M., Zhang, L. H., & Ross, C. J. (2020). CRISPR/Cas9 Editing: Sparking Discussion on Safety in Light of the Need for New Therapeutics. Human Gene Therapy, 31(15-16), 794-807. doi:10.1089/hum.2020.111

Guglielmi, G. (2018). Million-dollar Kavli prize recognizes scientist scooped on CRISPR Архивная копия от 15 июня 2021 на Wayback Machine. Nature, 558(7708), 17-19. doi:10.1038/d41586-018-05308-5

Mali Prashant, Esvelt Kevin M, Church George M. Cas9 as a versatile tool for engineering biology // Nature Methods. — 2013. — Vol. 10. — P. 957-963. — ISSN 1548-7091. — doi:10.1038/nmeth.2649.

Mali Prashant, Aach John, Stranges P Benjamin, Esvelt Kevin M, Moosburner Mark, Kosuri Sriram, Yang Luhan, Church George M. CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering // Nature Biotechnology. — 2013. — 1 августа (т. 31, № 9). — С. 833—838. — ISSN 1087-0156. — doi:10.1038/nbt.2675. [исправить]

Gilbert Luke A., Larson Matthew H., Morsut Leonardo, Liu Zairan, Brar Gloria A., Torres Sandra E., Stern-Ginossar Noam, Brandman Onn, Whitehead Evan H., Doudna Jennifer A., Lim Wendell A., Weissman Jonathan S., Qi Lei S. CRISPR-Mediated Modular RNA-Guided Regulation of Transcription in Eukaryotes // Cell. — 2013. — Июль (т. 154, № 2). — С. 442—451. — ISSN 0092-8674. — doi:10.1016/j.cell.2013.06.044. — PMID 23849981. [исправить]

Esvelt Kevin M, Smidler Andrea L, Catteruccia Flaminia, Church George M. Concerning RNA-guided gene drives for the alteration of wild populations // eLife. — 2014. — 17 июля (т. 3). — ISSN 2050-084X. — doi:10.7554/eLife.03401. [исправить]

Cyranoski David, Reardon Sara. Chinese scientists genetically modify human embryos // Nature. — 2015. — 22 апреля. — ISSN 1476-4687. — doi:10.1038/nature.2015.17378. [исправить]

Pogson M., Parola C., Kelton W. J., Heuberger P., Reddy S. T. Immunogenomic engineering of a plug-and-(dis)play hybridoma platform. (англ.) // Nature communications. — 2016. — Vol. 7. — P. 12535. — doi:10.1038/ncomms12535. — PMID 27531490. [исправить]

Komor A. C., Kim Y. B., Packer M. S., Zuris J. A., Liu D. R. Programmable editing of a target base in genomic DNA without double-stranded DNA cleavage. (англ.) // Nature. — 2016. — doi:10.1038/nature17946. — PMID 27096365. [исправить]

Gaudelli, N. M., Komor, A. C., Rees, H. A., Packer, M. S., Badran, A. H., Bryson, D. I., & Liu, D. R. (2017). Programmable base editing of A• T to G• C in genomic DNA without DNA cleavage. Nature, 551(7681), 464-471. doi:10.1038/nature24644 PMC 5726555 PMID 29160308

Xie, J., Huang, X., Wang, X., Gou, S., Liang, Y., Chen, F., ... & Jin, Q. (2020). ACBE, a new base editor for simultaneous C-to-T and A-to-G substitutions in mammalian systems. BMC biology, 18(1), 1-14. doi:10.1186/s12915-020-00866-5 PMC 7510086 PMID 32967664

Liu, Z., Chen, S., Shan, H., Jia, Y., Chen, M., Song, Y., ... & Li, Z. (2020). Precise base editing with CC context-specificity using engineered human APOBEC3G-nCas9 fusions. BMC biology, 18(1), 111 doi:10.1186/s12915-020-00849-6 PMC 7461344 PMID 32867757

Billon, P., Bryant, E. E., Joseph, S. A., Nambiar, T. S., Hayward, S. B., Rothstein, R., & Ciccia, A. (2017). CRISPR-mediated base editing enables efficient disruption of eukaryotic genes through induction of STOP codons. Molecular cell, 67(6), 1068-1079. doi:10.1016/j.molcel.2017.08.008 PMC 5610906 PMID 28890334

Kluesner, M. G., Lahr, W. S., Lonetree, C. L., Smeester, B. A., Claudio-Vázquez, P. N., Pitzen, S. P., ... & Webber, B. R. (2020). CRISPR-Cas9 cytidine and adenosine base editing of splice-sites mediates highly-efficient disruption of proteins in primary cells. bioRxiv. doi:10.1101/2020.04.16.045336

Levy, J. M., Yeh, W. H., Pendse, N., Davis, J. R., Hennessey, E., Butcher, R., ... & Liu, D. R. (2020). Cytosine and adenine base editing of the brain, liver, retina, heart and skeletal muscle of mice via adeno-associated viruses. Nature Biomedical Engineering, 4(1), 97-110. doi:10.1038/s41551-019-0501-5 PMC 6980783 PMID 31937940

Roy K. R., Smith J. D., Vonesch S. C., Lin G., Tu C. S., Lederer A. R., Chu A., Suresh S., Nguyen M., Horecka J., Tripathi A., Burnett W. T., Morgan M. A., Schulz J., Orsley K. M., Wei W., Aiyar R. S., Davis R. W., Bankaitis V. A., Haber J. E., Salit M. L., St Onge R. P., Steinmetz L. M. Multiplexed precision genome editing with trackable genomic barcodes in yeast. (англ.) // Nature Biotechnology. — 2018. — July (vol. 36, no. 6). — P. 512—520. — doi:10.1038/nbt.4137. — PMID 29734294. [исправить]

Strecker J., Ladha A., Gardner Z., et al., (2019). RNA-guided DNA insertion with CRISPR-associated transposases. Science, eaax9181 doi:10.1126/science.aax9181

Tsai S. Q., Wyvekens N., Khayter C., Foden J. A., Thapar V., Reyon D., Goodwin M. J., Aryee M. J., Joung J. K. Dimeric CRISPR RNA-guided FokI nucleases for highly specific genome editing // Nature Biotechnology. — 2014. — Vol. 32, no. 6. — P. 569—576. — doi:10.1038/nbt.2908. — PMID 24770325. [исправить]

Guilinger J. P., Thompson D. B., Liu D. R. Fusion of catalytically inactive Cas9 to FokI nuclease improves the specificity of genome modification. (англ.) // Nature biotechnology. — 2014. — Vol. 32, no. 6. — P. 577—582. — doi:10.1038/nbt.2909. — PMID 24770324. [исправить]

Wyvekens N., Topkar V. V., Khayter C., Joung J. K., Tsai S. Q. Dimeric CRISPR RNA-Guided FokI-dCas9 Nucleases Directed by Truncated gRNAs for Highly Specific Genome Editing. (англ.) // Human gene therapy. — 2015. — Vol. 26, no. 7. — P. 425—431. — doi:10.1089/hum.2015.084. — PMID 26068112. [исправить]

Xu X., Tao Y., Gao X., Zhang L., Li X., Zou W., Ruan K., Wang F., Xu G. L., Hu R. A CRISPR-based approach for targeted DNA demethylation. (англ.) // Cell discovery. — 2016. — Vol. 2. — P. 16009. — doi:10.1038/celldisc.2016.9. — PMID 27462456. [исправить]

Morita S., Noguchi H., Horii T., Nakabayashi K., Kimura M., Okamura K., Sakai A., Nakashima H., Hata K., Nakashima K., Hatada I. Targeted DNA demethylation in vivo using dCas9-peptide repeat and scFv-TET1 catalytic domain fusions. (англ.) // Nature biotechnology. — 2016. — doi:10.1038/nbt.3658. — PMID 27571369. [исправить]

Dahlman J. E., Abudayyeh O. O., Joung J., Gootenberg J. S., Zhang F., Konermann S. Orthogonal gene knockout and activation with a catalytically active Cas9 nuclease. (англ.) // Nature Biotechnology. — 2015. — November (vol. 33, no. 11). — P. 1159—1161. — doi:10.1038/nbt.3390. — PMID 26436575. [исправить]

Kiani S., Chavez A., Tuttle M., Hall R. N., Chari R., Ter-Ovanesyan D., Qian J., Pruitt B. W., Beal J., Vora S., Buchthal J., Kowal E. J., Ebrahimkhani M. R., Collins J. J., Weiss R., Church G. Cas9 gRNA engineering for genome editing, activation and repression. (англ.) // Nature Methods. — 2015. — November (vol. 12, no. 11). — P. 1051—1054. — doi:10.1038/nmeth.3580. — PMID 26344044. [исправить]

Liao H. K., Hatanaka F., Araoka T., Reddy P., Wu M. Z., Sui Y., Yamauchi T., Sakurai M., O'Keefe D. D., Núñez-Delicado E., Guillen P., Campistol J. M., Wu C. J., Lu L. F., Esteban C. R., Izpisua Belmonte J. C. In Vivo Target Gene Activation via CRISPR/Cas9-Mediated Trans-epigenetic Modulation. (англ.) // Cell. — 2017. — 14 December (vol. 171, no. 7). — P. 1495—1507. — doi:10.1016/j.cell.2017.10.025. — PMID 29224783. [исправить]

Morita, S., Horii, T., Kimura, M., & Hatada, I. (2020). Synergistic Upregulation of Target Genes by TET1 and VP64 in the dCas9–SunTag Platform. International journal of molecular sciences, 21(5), 1574. doi:10.3390/ijms21051574 PMC 7084704 PMID 32106616

Tanenbaum, M. E., Gilbert, L. A., Qi, L. S., Weissman, J. S., & Vale, R. D. (2014). A protein-tagging system for signal amplification in gene expression and fluorescence imaging. Cell, 159(3), 635-646. doi:10.1016/j.cell.2014.09.039 PMC 4252608 PMID 25307933

Qiu, M., Glass, Z., Chen, J., Haas, M., Jin, X., Zhao, X., ... & Xu, Q. (2021). Lipid nanoparticle-mediated codelivery of Cas9 mRNA and single-guide RNA achieves liver-specific in vivo genome editing of Angptl3. Proceedings of the National Academy of Sciences, 118(10). PMID 33649229 doi:10.1073/pnas.2020401118

Finn J. D., Smith A. R., Patel M. C., Shaw L., Youniss M. R., van Heteren J., Dirstine T., Ciullo C., Lescarbeau R., Seitzer J., Shah R. R., Shah A., Ling D., Growe J., Pink M., Rohde E., Wood K. M., Salomon W. E., Harrington W. F., Dombrowski C., Strapps W. R., Chang Y., Morrissey D. V. A Single Administration of CRISPR/Cas9 Lipid Nanoparticles Achieves Robust and Persistent In Vivo Genome Editing. (англ.) // Cell Reports. — 2018. — 27 February (vol. 22, no. 9). — P. 2227—2235. — doi:10.1016/j.celrep.2018.02.014. — PMID 29490262. [исправить]

Horodecka, K., & Düchler, M. (2021). CRISPR/Cas9: Principle, Applications, and Delivery through Extracellular Vesicles. International Journal of Molecular Sciences, 22(11), 6072. PMID 34199901 PMC 8200053 doi:10.3390/ijms22116072

Gee, P., Lung, M. S., Okuzaki, Y., Sasakawa, N., Iguchi, T., Makita, Y., ... & Wang, X. H. (2020). Extracellular nanovesicles for packaging of CRISPR-Cas9 protein and sgRNA to induce therapeutic exon skipping. Nature Communications, 11(1), 1-18. PMC 7070030 PMID 32170079 doi:10.1038/s41467-020-14957-y

Zhang, Z., Baxter, A. E., Ren, D., Qin, K., Chen, Z., Collins, S. M., ... & Shi, J. (2023). Efficient engineering of human and mouse primary cells using peptide-assisted genome editing. Nature Biotechnology, 1-11. PMID 37095348 doi:10.1038/s41587-023-01756-1

Pausch P., Al-Shayeb1 B., Bisom-Rapp E, et al. (2020). CRISPR-CasΦ from huge phages is a hypercompact genome editor. Science. 369(6501), 333-337 doi:10.1126/science.abb1400

Ding X., Seebeck T., Feng Y., Jiang Y., Davis G. D., Chen F. Improving CRISPR-Cas9 Genome Editing Efficiency by Fusion with Chromatin-Modulating Peptides. (англ.) // The CRISPR Journal. — 2019. — February (vol. 2). — P. 51—63. — doi:10.1089/crispr.2018.0036. — PMID 31021236. [исправить]

Anzalone, A. V., Randolph, P. B., Davis, J. R., Sousa, A. A., Koblan, L. W., Levy, J. M., ... & Liu, D. R. (2019). Search-and-replace genome editing without double-strand breaks or donor DNA. Nature, 1-1. doi:10.1038/s41586-019-1711-4

Geurts, M. H., de Poel, E., Pleguezuelos-Manzano, C., Oka, R., Carrillo, L., Andersson-Rolf, A., ... & Clevers, H. (2021). Evaluating CRISPR-based prime editing for cancer modeling and CFTR repair in organoids. Life Science Alliance, 4(10). PMID 34373320 doi:10.26508/lsa.202000940

Ledford, H. (2019). Super-precise new CRISPR tool could tackle a plethora of genetic diseases. Nature, 574(7779), 464-465 doi:10.1038/d41586-019-03164-5

Swain, T., Pflueger, C., Freytag, S., Poppe, D., Pflueger, J., Nguyen, T., ... & Lister, R. (2024). A modular dCas9-based recruitment platform for combinatorial epigenome editing. Nucleic Acids Research, 52(1), 474–491 doi:10.1093/nar/gkad1108

Ishii T., Schubert V., Khosravi S., Dreissig S., Metje-Sprink J., Sprink T., Fuchs J., Meister A., Houben A. RNA-guided endonuclease - in situ labelling (RGEN-ISL): a fast CRISPR/Cas9-based method to label genomic sequences in various species. (англ.) // The New Phytologist. — 2019. — May (vol. 222, no. 3). — P. 1652—1661. — doi:10.1111/nph.15720. — PMID 30847946. [исправить]

Makoto Saito, Peiyu Xu, Guilhem Faure, Samantha Maguire, Soumya Kannan, Han Altae-Tran, Sam Vo, AnAn Desimone, Rhiannon K. Macrae, Feng Zhang. Fanzor is a eukaryotic programmable RNA-guided endonuclease (англ.) // Nature. — 2023-06-28. — P. 1–3. — ISSN 1476-4687. — doi:10.1038/s41586-023-06356-2. Архивировано 29 июня 2023 года.

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Xu, X.; Hulshoff, M.S.; Tan, X.; Zeisberg, M.; Zeisberg, E.M. CRISPR/Cas Derivatives as Novel Gene Modulating Tools: Possibilities and In Vivo Applications. Int. J. Mol. Sci. 2020, 21(9), 3038; https://doi.org/10.3390/ijms21093038

Gemberling, M., Siklenka, K., Rodriguez, E., Eisinger, K., Barrera, A., Liu, F., ... & Gersbach, C. (2021). Transgenic mice for in vivo epigenome editing with CRISPR-based systems. bioRxiv. https://doi.org/10.1101/2021.03.08.434430

Li, J., Mahata, B., Escobar, M. et al. (2021). Programmable human histone phosphorylation and gene activation using a CRISPR/Cas9-based chromatin kinase. Nat Commun 12, 896, https://doi.org/10.1038/s41467-021-21188-2

Xiaoshu Xu, Augustine Chemparathy, Leiping Zeng, Hannah R. Kempton, Stephen Shang, Muneaki Nakamura, Lei S. Qi, (2021). Engineered miniature CRISPR-Cas system for mammalian genome regulation and editing, Molecular Cell, https://doi.org/10.1016/j.molcel.2021.08.008.

Artegiani, B., Hendriks, D., Beumer, J. et al. (2020). Fast and efficient generation of knock-in human organoids using homology-independent CRISPR–Cas9 precision genome editing. Nat Cell Biol

Yang, Q., Oost, K.C. & Liberali, P. (2020). Engineering human knock-in organoids. Nat Cell Biol

Kawasaki, S., Ono, H., Hirosawa, M. et al. (2023). Programmable mammalian translational modulators by CRISPR-associated proteins. Nat Commun 14, 2243 https://doi.org/10.1038/s41467-023-37540-7

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